BAC Information

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BAC

Clone NameB6Ng01-296K01
Chromosome4 (Build37)
Map Location 80,164,603 - 80,165,708
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneTyrp1, D4Bwg0951e, Mpdz, LOC100040131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296K01.bB6Ng01-296K01.g
ACCGA092187GA092188
length1,2081,098
definitionB6Ng01-296K01.b B6Ng01-296K01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctctgaagaaacagactgggaggaagaagcagctcattacca
gccagataaagtgctagctagtcggtcaagaaaaaagccaaaagcggctg
gcgaaagccagcatgctgttcagcctccgggcagtcggcttcaaggtccg
ccctatgcggagcccccgccctgtgtagtgcgtcagccctgcgcagagag
acaatgcgcagagagacaatgcgcagagagacaatgcgcagagaggcaat
gcgcagactcattcattcccagagaggaacaaaggaaaatacaacaggca
tttccggtctttgaaggagccgagggtgggcgtgtccacgctccggtaga
atatgtgcagattaaagaatttgccgagtcggtccgtaaatacggaacca
atgctaattttaccttggtgcagttagacaggcttgccggcatggcacta
actcctgccgactggcaaacgattgtaaaagccgctctccctagtatggg
caaatatatgaaatggagagcgctttggcatgaggctgcacaagcacagg
ccggaacaaacgcagctgctttgactccagagcagagagattggactttt
gacttgttaacgggtcagggagcttattctgctgatcagacaaactacca
ttggggagcttatgcccaaatttcctccacggctattagggcctaaaagg
cgctctcccaagcaggtgaagccactgggcaattaacaaggatcgtccag
ggacctcaggagtccttctcagattttgtggccagtatgacagaggcagg
ctcttgcagcctacaaggtcttattgtccaccctggagttgtagatcaga
ttgtaaaggggaacttcagttctctgttcttgtcctcaagttgtcttttc
tatatcacaagggacaaaatagctcaactaataattttgccaagcctaca
tggctgttttccttcctctggtattcctagagctgccagagggattggtt
ctactgaaaatgatctgattacttaataatgcctttagattgttgtcaaa
ttttattctactcacgtaaggtaaaccctcgtggcgtcaagccaatacag
tctgacatgatgtcacgcatattcctcttgaagaaatcaatttcagttag
aatagaagatattcacctccataccgttatagcatctgtcacaaagcccg
tttgcgga

gaattcaaagtcctgtgactagttatttggctagttagttgttgattgtt
attcttggtattggatgttgaaactaaatagcaaaccgatatatttaccc
ttctgtgttattgttctgcaaatctttgcaacagatcttccttgacaagt
tccataattattattcttgtcatctaaagatgtagtatattataattttt
catccagttgttcctttgttaatatagctcggtaacccttcaaaggatca
tctttaatgtgcatctaagatttagatgtctagacttaatatcagatgtc
aaagaaaaaatgggaatgtccagttgctgctaaggcaaaagctctctgaa
gagacacaactcacagaagttaggagaaatgctaaccaaaacatctttaa
aggtgcatatctgtaactttgcagaatcaatacgtatttgagaagagata
gaaaagtttgcaattttgtgacatgattgaaaatggatgctgccacaaca
catttctgtggtctagaaactttccaagacattaaatgttttctgttcag
tatagagatcacgatggttgaggaaaaagaaataaaaaacaattaaaaca
aacaaaatggttttaattaaggaataaatgagtgtttcaaaggttaaaac
ttacattgcactttgtaaattcatggattctgagaagatactactggtgc
ttttgtgtatcactgccttaacttacataggtttttattttaggctatat
ctgttccatcccttaaatgttcttattacatggtagacattcagtacact
gtgtctaacaatcgtttgtatgtttcagaacaaatttggtttctcatttt
cttgtaaggcaagaggaacatcagccaagagcaactctggaaaatcatga
gttggtgtgaatagtgccattctcctgaatgtttctgaataaaggatttt
attacagcacatttcacctgatcctgctccttctgtaccaagcagccatt
gctacagaaaactgtgtgttaagtgttagacatctggtttcagtcagtcc
ttctctgccacaacttgtctctcctgggaatccattaaggctaagtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_80164603_80165708
seq2: B6Ng01-296K01.g_69_1166 (reverse)

seq1  GCACTTAG-CTTTATTGAATCCCAGGAGAGAACCAAG-TGTGGCAGAGGA  48
      |||||||| ||| || || ||||||||||||  |||| ||||||||||  
seq2  GCACTTAGCCTTAATGGATTCCCAGGAGAGA--CAAGTTGTGGCAGAG--  46

seq1  AGGGACTGACTGGAACCAGATGTCTTAACACCTTAACAACACAGTTTTCT  98
      | |||||||||| ||||||||||| ||||| |||||| ||||||||||||
seq2  AAGGACTGACTGAAACCAGATGTC-TAACA-CTTAAC-ACACAGTTTTCT  93

seq1  GTAGCAATGGCTGGCTTGGTACAGAAGGAGCAGGGATTCAGGTGGAATGT  148
      |||||||||||| |||||||||||||||||||||   ||||||| |||||
seq2  GTAGCAATGGCT-GCTTGGTACAGAAGGAGCAGG--ATCAGGTGAAATGT  140

seq1  GCTGTAATAAAATCCTTTATTCAGAAACATTCAGGAGAATGGCACTATTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAATAAAATCCTTTATTCAGAAACATTCAGGAGAATGGCACTATTC  190

seq1  ACACCAACTCATGAATTTTCCAGAGTTGCTCTTGGCTGATGTTCCTCTTG  248
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACACCAACTCATG-ATTTTCCAGAGTTGCTCTTGGCTGATGTTCCTCTTG  239

seq1  CCTTACAAGAAAATGAG-AACCAAATTTGTTCTGAAACATACAAACGATT  297
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCTTACAAGAAAATGAGAAACCAAATTTGTTCTGAAACATACAAACGATT  289

seq1  GTTAGACACAGTGTACTGAATGTCTACCATGTAATAAGAACATTTAAGGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGACACAGTGTACTGAATGTCTACCATGTAATAAGAACATTTAAGGG  339

seq1  ATGGAACAGATATAGCCTAAAATAAAAACCTATGTAAGTTAAGGCAGTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACAGATATAGCCTAAAATAAAAACCTATGTAAGTTAAGGCAGTGA  389

seq1  TACACAAAAGCACCAGTAGTATCTTCTCAGAATCCATGAATTTACAAAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAAAGCACCAGTAGTATCTTCTCAGAATCCATGAATTTACAAAGT  439

seq1  GCAATGTAAGTTTTAACCTTTGAAACACTCATTTATTCCTTAATTAAAAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTAAGTTTTAACCTTTGAAACACTCATTTATTCCTTAATTAAAAC  489

seq1  CATTTTGTTTGTTTTAATTGTTTTTTATTTCTTTTTCCTCAACCATCGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTTTGTTTTAATTGTTTTTTATTTCTTTTTCCTCAACCATCGTG  539

seq1  ATCTCTATACTGAACAGAAAACATTTAATGTCTTGGAAAGTTTCTAGACC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTATACTGAACAGAAAACATTTAATGTCTTGGAAAGTTTCTAGACC  589

seq1  ACAGAAATGTGTTGTGGCAGCATCCATTTTCAATCATGTCACAAAATTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATGTGTTGTGGCAGCATCCATTTTCAATCATGTCACAAAATTGC  639

seq1  AAACTTTTCTATCTCTTCTCAAATACGTATTGATTCTGCAAAGTTACAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTCTATCTCTTCTCAAATACGTATTGATTCTGCAAAGTTACAGA  689

seq1  TATGCACCTTTAAAGATGTTTTGGTTAGCATTTCTCCTAACTTCTGTGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACCTTTAAAGATGTTTTGGTTAGCATTTCTCCTAACTTCTGTGAG  739

seq1  TTGTGTCTCTTCAGAGAGCTTTTGCCTTAGCAGCAACTGGACATTCCCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTCTTCAGAGAGCTTTTGCCTTAGCAGCAACTGGACATTCCCAT  789

seq1  TTTTTCTTTGACATCTGATATTAAGTCTAGACATCTAAATCTTAGATGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTGACATCTGATATTAAGTCTAGACATCTAAATCTTAGATGCA  839

seq1  CATTAAAGATGATCCTTTGAAGGGTTACCGAGCTATATTAACAAAGGAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAGATGATCCTTTGAAGGGTTACCGAGCTATATTAACAAAGGAAC  889

seq1  AACTGGATGAAAAATTATAATATACTACATCTTTAGATGACAAGAATAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGATGAAAAATTATAATATACTACATCTTTAGATGACAAGAATAAT  939

seq1  AATTATGGAACTTGTCAAGGAAGATCTGTTGCAAAGATTTGCAGAACAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGGAACTTGTCAAGGAAGATCTGTTGCAAAGATTTGCAGAACAAT  989

seq1  AACACAGAAGGGTAAATATATCGGTTTGCTATTTAGTTTCAACATCCAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGAAGGGTAAATATATCGGTTTGCTATTTAGTTTCAACATCCAAT  1039

seq1  ACCAAGAATAACAATCAACAACTAACTAGCCAAATAACTAGTCACAGGAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAATAACAATCAACAACTAACTAGCCAAATAACTAGTCACAGGAC  1089

seq1  TTTGAATTC  1106
      |||||||||
seq2  TTTGAATTC  1098


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