BAC Information

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BAC

Clone NameB6Ng01-296K12
Chromosome4 (Build37)
Map Location 131,870,809 - 131,955,948
singlet/doubletdoublet
Overlap geneTrspap1, Rcc1, Snhg3, Phactr4
Upstream geneGm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864
Downstream geneMed18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296K12.bB6Ng01-296K12.g
ACCGA092209GA092210
length1,1891,154
definitionB6Ng01-296K12.b B6Ng01-296K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,954,766 - 131,955,948)(131,870,809 - 131,871,966)
sequence
gaattctgtttgcatggttaaggaaagcctttagccaaggcagcagagtt
taggcagttcttaaagggtgggtaggtcctctccacctgggttagagaaa
gaaatgccaggccaaaggaacaacttacgcaaatgaaaaacatgctgaag
agttggcacacatggctaccaccgtgggagatggttgctgacagatgcta
ctactagtaaggatcaaaagtctagcagcgggctggtgagatggctcagc
aggtaagaacactgactgctcttctgaaggtcctgagttcaagtctcagc
aaccacatggtggctcacaaccacccgtaatgagatctgacgccctcttc
tggtgtgtctgaagtcagctacagtgtacttatgtataataataaacctt
taaaaaaaaaaaaaagaagtctggcagccacattgtatcatcatagcata
tccctgagtgtttctaaggcttttcttgttttatgccttagtattttagt
cattttcttgttaccattgaggcttttgttgcttgtttctctatcaaaac
tgatcataaggcctggagaggtggctcagtgcttgttgtgtagcccagca
tagagcacagaaaccactagagctgttgaggaagacagagcaacatcagc
cgacctcttcttccacccgagtctctgcctgcatgcacacgcacgtactg
caccatacacacaaacaagaaggtgacagctggggttaggagaccactga
ggtggctcatcaggtaaaggcgctggccaccaagcctcaaaacccgagtt
ccatctccaggatccacatggtgaaaagaatgatgcttttctgacctcca
caggtgtgtgttctctcacacacatgcacaaataaagaaatggaatggaa
gtcttttaaaattgaggctgggaatgtagcacagttgctggaccagtgcc
tagtataaaacagccccaggccatccccagcatcgcataactaagtataa
gtagaacgagttttgtaatgccagtctaaattccagcacttggaaggtaa
gagacaagacgatcatcagttcaagcctccaatagttcagcttggacgcc
agctaagaacttacatgaaactgtccaaaaagaggagggggtaaacagcc
atacattttttttttacttcgagattccaaagaaattta
gaattcagttcccagcaaccacatggtggctcacaaccatctgtaatggg
atctgatgccttcttctggtgtgtctgaggggagtgacagggtactcata
taaaataaataaatcttttttaaagggttttttatgtaatttacatatat
ggatgttttgcattggatctcagagagctgtaaactgtcattccggtgct
cagaactgaactcaggacccctggaagaacagtcagtgctcttaaccgct
aagccatctcttcaacccctttctcaagatcttgggagacagttgcaaaa
actcaggaaaacacagcataaaaaatctgggctagctgggcagtgatgac
acaccatctttaatcccagcactcgggaggcacagttggaggacaggctg
gcctacagagtgagttccaagacagacaaggctacatagagaaactcttg
ccctcaaaatgataaaaacatacaattaaaaaaataaattgagggctggt
gagatggctcagtaagtaagagcacccgactgctcttccgaaggtccgga
gttcaaatcccagcaaccacatggtggctcacaaccatcctaacgagatc
tgactccctcttctggagtgtctgaagacagctacagtgtacttacatat
aaataaataaatctttaaaaaataaataaataaataaataaataaataaa
tagaaaatctgggtgccgggcatggtggtgcccgcctttaatcccagcac
tcgggaggcagaggcaggcagatttctaagttcgaggccagcctggtcta
caaagtgagttccaggacagccagggctatacgagaaatcctatttcgaa
aaacaaaaacaaacaaaaaatagaaaatctgggtttaagatgattcaaga
tggacttcaaactttagcctgtgacatcgccttgcctgcactgcagcacc
cctagtctctgcaagaatgttaattgctgtggaatgaatagcttgctcat
gctaagcaatgctcgaccttggagcgctcccctcccacagctgcttattt
tgttgagtgtgggcttggacgtgacttaacagtgcctggggataatataa
tacggtgatgaatctatcggtccctcatcatgggagaaaaacctgaaccc
tctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_131954766_131955948
seq2: B6Ng01-296K12.b_46_1234 (reverse)

seq1  TAAA-TTCTTTGAAATCTCTGAAGTAAAAAAAAAAAAATGTAT-GCTGTT  48
      |||| ||||||| |||||| |||||   ||||||||||||||| ||||||
seq2  TAAATTTCTTTGGAATCTC-GAAGT---AAAAAAAAAATGTATGGCTGTT  46

seq1  TACCCCCTCCTCTTTTGGGACAGTTTCATGTA--GTCTAGGCTGGCGT-C  95
      |||||||||||||||| |||||||||||||||   |||  |||||||| |
seq2  TACCCCCTCCTCTTTTTGGACAGTTTCATGTAAGTTCTTAGCTGGCGTCC  96

seq1  AAGCTGAACTA-TGGAGCCTTGAACTGATGATCGTCCTGTCTC-TACCTC  143
      ||||||||||| ||||| |||||||||||||||||| |||||| ||||| 
seq2  AAGCTGAACTATTGGAGGCTTGAACTGATGATCGTCTTGTCTCTTACCTT  146

seq1  CCAAGTGCTGGAATTTAGACTGGCATTAC-AGACTCGTTCTAC-TATACT  191
      ||||||||||||||||||||||||||||| | ||||||||||| ||||||
seq2  CCAAGTGCTGGAATTTAGACTGGCATTACAAAACTCGTTCTACTTATACT  196

seq1  TAGTTATGCGATGCTGGGGATGGCCTGGGGCTG-TTTATACTAGGCACTG  240
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAGTTATGCGATGCTGGGGATGGCCTGGGGCTGTTTTATACTAGGCACTG  246

seq1  GTCCAGCAACTGTGCTACATTCCCAGCCTCAATTTTAAAAGACTTCCATT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCAACTGTGCTACATTCCCAGCCTCAATTTTAAAAGACTTCCATT  296

seq1  CCATTTCTTTATTTGTGCATGTGTGTGAGAGAACACACACCTGTGGAGGT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTTTATTTGTGCATGTGTGTGAGAGAACACACACCTGTGGAGGT  346

seq1  CAGAAAAGCATCATTCTTTTCACCATGTGGATCCTGGAGATGGAACTCGG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGCATCATTCTTTTCACCATGTGGATCCTGGAGATGGAACTCGG  396

seq1  GTTTTGAGGCTTGGTGGCCAGCGCCTTTACCTGATGAGCCACCTCAGTGG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGGCTTGGTGGCCAGCGCCTTTACCTGATGAGCCACCTCAGTGG  446

seq1  TCTCCTAACCCCAGCTGTCACCTTCTTGTTTGTGTGTATGGTGCAGTACG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAACCCCAGCTGTCACCTTCTTGTTTGTGTGTATGGTGCAGTACG  496

seq1  TGCGTGTGCATGCAGGCAGAGACTCGGGTGGAAGAAGAGGTCGGCTGATG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGTGCATGCAGGCAGAGACTCGGGTGGAAGAAGAGGTCGGCTGATG  546

seq1  TTGCTCTGTCTTCCTCAACAGCTCTAGTGGTTTCTGTGCTCTATGCTGGG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGTCTTCCTCAACAGCTCTAGTGGTTTCTGTGCTCTATGCTGGG  596

seq1  CTACACAACAAGCACTGAGCCACCTCTCCAGGCCTTATGATCAGTTTTGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAACAAGCACTGAGCCACCTCTCCAGGCCTTATGATCAGTTTTGA  646

seq1  TAGAGAAACAAGCAACAAAAGCCTCAATGGTAACAAGAAAATGACTAAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAACAAGCAACAAAAGCCTCAATGGTAACAAGAAAATGACTAAAA  696

seq1  TACTAAGGCATAAAACAAGAAAAGCCTTAGAAACACTCAGGGATATGCTA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGGCATAAAACAAGAAAAGCCTTAGAAACACTCAGGGATATGCTA  746

seq1  TGATGATACAATGTGGCTGCCAGACTTCTTTTTTTTTTTTTTAAAGGTTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATACAATGTGGCTGCCAGACTTCTTTTTTTTTTTTTTAAAGGTTT  796

seq1  ATTATTATACATAAGTACACTGTAGCTGACTTCAGACACACCAGAAGAGG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATACATAAGTACACTGTAGCTGACTTCAGACACACCAGAAGAGG  846

seq1  GCGTCAGATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGCTGAGA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCAGATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGCTGAGA  896

seq1  CTTGAACTCAGGACCTTCAGAAGAGCAGTCAGTGTTCTTACCTGCTGAGC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCAGGACCTTCAGAAGAGCAGTCAGTGTTCTTACCTGCTGAGC  946

seq1  CATCTCACCAGCCCGCTGCTAGACTTTTGATCCTTACTAGTAGTAGCATC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCACCAGCCCGCTGCTAGACTTTTGATCCTTACTAGTAGTAGCATC  996

seq1  TGTCAGCAACCATCTCCCACGGTGGTAGCCATGTGTGCCAACTCTTCAGC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCAACCATCTCCCACGGTGGTAGCCATGTGTGCCAACTCTTCAGC  1046

seq1  ATGTTTTTCATTTGCGTAAGTTGTTCCTTTGGCCTGGCATTTCTTTCTCT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTCATTTGCGTAAGTTGTTCCTTTGGCCTGGCATTTCTTTCTCT  1096

seq1  AACCCAGGTGGAGAGGACCTACCCACCCTTTAAGAACTGCCTAAACTCTG  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGTGGAGAGGACCTACCCACCCTTTAAGAACTGCCTAAACTCTG  1146

seq1  CTGCCTTGGCTAAAGGCTTTCCTTAACCATGCAAACAGAATTC  1183
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGGCTAAAGGCTTTCCTTAACCATGCAAACAGAATTC  1189

seq1: chr4_131870809_131871966
seq2: B6Ng01-296K12.g_66_1219

seq1  GAATTCAGTTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGG  50

seq1  ATCTGATGCCTTCTTCTGGTGTGTCTGAGGGGAGTGACAGGGTACTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGCCTTCTTCTGGTGTGTCTGAGGGGAGTGACAGGGTACTCATA  100

seq1  TAAAATAAATAAATCTTTTTTAAAGGGTTTTTTATGTAATTTACATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAATAAATCTTTTTTAAAGGGTTTTTTATGTAATTTACATATAT  150

seq1  GGATGTTTTGCATTGGATCTCAGAGAGCTGTAAACTGTCATTCCGGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTTTGCATTGGATCTCAGAGAGCTGTAAACTGTCATTCCGGTGCT  200

seq1  CAGAACTGAACTCAGGACCCCTGGAAGAACAGTCAGTGCTCTTAACCGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGAACTCAGGACCCCTGGAAGAACAGTCAGTGCTCTTAACCGCT  250

seq1  AAGCCATCTCTTCAACCCCTTTCTCAAGATCTTGGGAGACAGTTGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATCTCTTCAACCCCTTTCTCAAGATCTTGGGAGACAGTTGCAAAA  300

seq1  ACTCAGGAAAACACAGCATAAAAAATCTGGGCTAGCTGGGCAGTGATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGAAAACACAGCATAAAAAATCTGGGCTAGCTGGGCAGTGATGAC  350

seq1  ACACCATCTTTAATCCCAGCACTCGGGAGGCACAGTTGGAGGACAGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATCTTTAATCCCAGCACTCGGGAGGCACAGTTGGAGGACAGGCTG  400

seq1  GCCTACAGAGTGAGTTCCAAGACAGACAAGGCTACATAGAGAAACTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACAGAGTGAGTTCCAAGACAGACAAGGCTACATAGAGAAACTCTTG  450

seq1  CCCTCAAAATGATAAAAACATACAATTAAAAAAATAAATTGAGGGCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAAATGATAAAAACATACAATTAAAAAAATAAATTGAGGGCTGGT  500

seq1  GAGATGGCTCAGTAAGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAGTAAGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGGA  550

seq1  GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCTAACGAGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCTAACGAGATC  600

seq1  TGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATAT  650

seq1  AAATAAATAAATCTTTAAAAAATAAATAAATAAATAAATAAATAAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATCTTTAAAAAATAAATAAATAAATAAATAAATAAATAAA  700

seq1  TAGAAAATCTGGGTGCCGGGCATGGTGGTGCCCGCCTTTAATCCCAGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATCTGGGTGCCGGGCATGGTGGTGCCCGCCTTTAATCCCAGCAC  750

seq1  TCGGGAGGCAGAGGCAGGCAGATTTCTAAGTTCGAGGCCAGCCTGGTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAGGCAGAGGCAGGCAGATTTCTAAGTTCGAGGCCAGCCTGGTCTA  800

seq1  CAAAGTGAGTTCCAGGACAGCCAGGGCTATACGAGAAATCCTATTTCGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGAGTTCCAGGACAGCCAGGGCTATACGAGAAATCCTATTTCGAA  850

seq1  AAACAAAAACAAACAAAAAATAGAAAATCTGGGTTTAAGATGATTCAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAACAAACAAAAAATAGAAAATCTGGGTTTAAGATGATTCAAGA  900

seq1  TGGACTTCAAACTTTAGCCTGTGACATCGCCTTGCCTGCACTGCAGCACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTCAAACTTTAGCCTGTGACATCGCCTTGCCTGCACTGCAGCACC  950

seq1  CCTAGTCTCTGCAGGAATGTTAATTGCTGTGGAATGAATAGCCTTGCTCA  1000
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  CCTAGTCTCTGCAAGAATGTTAATTGCTGTGGAATGAATAG-CTTGCTCA  999

seq1  TGCTAAGCAATGCTCGACCTT-GAGCGCTCCCCTCCCACAGCTGCCTTAT  1049
      ||||||||||||||||||||| ||||||||||||||||||||||| |  |
seq2  TGCTAAGCAATGCTCGACCTTGGAGCGCTCCCCTCCCACAGCTGCTTATT  1049

seq1  TTGTTGAGTTCCTTGGGCTTTGGACGTGACTTTTACAGTG-CTGGGGATA  1098
      |||||||||    ||||| ||||||||||| || |||||| |||||||| 
seq2  TTGTTGAGT---GTGGGC-TTGGACGTGAC-TTAACAGTGCCTGGGGAT-  1093

seq1  AATATAATAGGGTGATGATACTTATCGTCCCCTCATCCCAT-GGAGAAAA  1147
      ||||||||| |||||||| |  |||||  |||||||  ||| ||||||||
seq2  AATATAATACGGTGATGA-ATCTATCGGTCCCTCAT--CATGGGAGAAAA  1140

seq1  --CTGAA-CCTCTG  1158
        ||||| ||||||
seq2  ACCTGAACCCTCTG  1154