BAC Information

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BAC

Clone NameB6Ng01-297K18
Chromosome4 (Build37)
Map Location 138,509,268 - 138,707,257
singlet/doubletdoublet
Overlap geneRnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4
Upstream geneEce1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3
Downstream gene9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297K18.bB6Ng01-297K18.g
ACCGA092974GA092975
length8441,107
definitionB6Ng01-297K18.b B6Ng01-297K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,509,268 - 138,510,097)(138,706,157 - 138,707,257)
sequence
gaattcacctgctgctcagctcccctttgctatttatattatttataaac
gtatatccagggtccttggcttaggaggtggtgctggtattacagactga
ctatccactcatctggtgacttcaactccacgcctcaggtctgcacagca
agtgttttgagcgcttaaacatctcccctctgcccggtactactcttaac
tttgctgtgagtttaaaattgctctgagaatgcaaaagtctttttgtttt
aaggcaggaggaagatgcaaatagcttggactttctggggtgaaaggaag
ggggacagacagaagttcagttagggactatgtggaagctgagacaccag
tctcgaaaaaaaggagatgtggggtgttgagtgtgcaaatcctgaattca
gggacaagcttcagccacaagcctaggggttgttggtgtgtaggtgagct
ggccagttttatgtcagcttgacacaaagttagtctcccttaggagctcc
atccataaattccatctgtaggtaatccctgtagggcgttttcttaattt
agtgattgttgagggagggtccggcccattgtgggtggagccatcccttg
gctggtggtcctgagtttcttatactaaagcattactgagcatgaggtgc
aagcccagtacacagcacttcctccaaggcctctgcatcagctcctacct
tccaggttcctgccctgcttgagttcctggtcctgacttcctttctatga
tgaaacagtgaatcagaagtggagccaaataaaacccttttccctcccgt
ttgatttggggtgtggtgtttcaccacagtaaccgtaaccctaa
gaattctaggtttcaaactcaggtccttatacttgaacagttgacattct
tgccaattaaactatctccctgattacatttcttttttttttggacagta
ataatcacttttttttttcttcctgggtaatcatatacttttcgtatcta
aaatcatttttctgagaaaagcttttactggtgtgatggctattcttggt
tgtcaatttgactacatctgatttgtttgtttgtttacttgtttgagaca
ggatttctctgtgtcctggaactcactctgcagaccaggctggccttgaa
ctcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggtgtg
cgccaccactgcccagtgggacttttttcttaattaaatcattgaagtgg
aaagagcctttctctgttactttgtttgggcaccatcagtttattataaa
agggagccatggaacttatttccataatgaaatagttcagaacatcagga
gaatggcagcttcatgtgacgccatttccacagcgattcagtccacatac
tttccaagaatgtcaccatctctaaattagaaataatttttgtcttctag
acaactttggtgcctccatgttctgggagaagaactttgtgtgatggttt
gcatatgcttggaccagggagtggcactgttagaaagcgtggccctgtgg
gagtaggtgtgtcactatgggtgtgggcttaagaccttcatcctagctgc
ctagaagccagtcttctgctagtagccttcagatgaagacatagaactct
cagctcctcctgcaccatgcctgactggataccatgctcccaccttgatg
ataatgaactgaacctctgaacttgcaagcccagccccaattaaacgttg
tccttataagagttgccttggtcatgatgtcttgttcacagcattaaagc
cctagaacactttggtctcagcttttcaacactgaacagttgactcttcc
cccaccttccctttggctcctggtctcacacatttactggtagcttcaat
tattttcttgagagatttttctgggaagcatattgcacacttagttacag
cttcgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_138509268_138510097
seq2: B6Ng01-297K18.b_50_893

seq1  GAATTCACCTGCTGCTCAGCTCCCCTTTGCTATTTATATTATTTATAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGCTGCTCAGCTCCCCTTTGCTATTTATATTATTTATAAAC  50

seq1  GTATATCCAGGGTCCTTGGCTTAGGAGGTGGTGCTGGTATTACAGACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCCAGGGTCCTTGGCTTAGGAGGTGGTGCTGGTATTACAGACTGA  100

seq1  CTATCCACTCATCTGGTGACTTCAACTCCACGCCTCAGGTCTGCACAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCACTCATCTGGTGACTTCAACTCCACGCCTCAGGTCTGCACAGCA  150

seq1  AGTGTTTTGAGCGCTTAAACATCTCCCCTCTGCCCGGTACTACTCTTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTGAGCGCTTAAACATCTCCCCTCTGCCCGGTACTACTCTTAAC  200

seq1  TTTGCTGTGAGTTTAAAATTGCTCTGAGAATGCAAAAGTCTTTTTGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTGAGTTTAAAATTGCTCTGAGAATGCAAAAGTCTTTTTGTTTT  250

seq1  AAGGCAGGAGGAAGATGCAAATAGCTTGGACTTTCTGGGGTGAAAGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGAGGAAGATGCAAATAGCTTGGACTTTCTGGGGTGAAAGGAAG  300

seq1  GGGGACAGACAGAAGTTCAGTTAGGGACTATGTGGAAGCTGAGACACCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAGACAGAAGTTCAGTTAGGGACTATGTGGAAGCTGAGACACCAG  350

seq1  TCTCGAAAAAAAGGAGATGTGGGGTGTTGAGTGTGCAAATCCTGAATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGAAAAAAAGGAGATGTGGGGTGTTGAGTGTGCAAATCCTGAATTCA  400

seq1  GGGACAAGCTTCAGCCACAAGCCTAGGGGTTGTTGGTGTGTAGGTGAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAGCTTCAGCCACAAGCCTAGGGGTTGTTGGTGTGTAGGTGAGCT  450

seq1  GGCCAGTTTTATGTCAGCTTGACAC-AAGTTAGTCTCCCTTAGGAGCTCC  499
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGCCAGTTTTATGTCAGCTTGACACAAAGTTAGTCTCCCTTAGGAGCTCC  500

seq1  ATCCATAAATTCCATCTGTAGGTAAT-CCTGTAGGGCGTTTTCTTAA-TT  547
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  ATCCATAAATTCCATCTGTAGGTAATCCCTGTAGGGCGTTTTCTTAATTT  550

seq1  AGTGATTGTTGAGGGAGGGTCCGGCCCATTGTGGGTGGAGCCATCCCTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTGTTGAGGGAGGGTCCGGCCCATTGTGGGTGGAGCCATCCCTTG  600

seq1  GCTGGTGGTCCTGAG-TTCTTATACTAAAGCA-TACTGAGCATGAGGTGC  645
      ||||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  GCTGGTGGTCCTGAGTTTCTTATACTAAAGCATTACTGAGCATGAGGTGC  650

seq1  AAG-CCAGTACACAGCAC-TCCTCCAAGGCCTCTGCATCAGCTCCTACC-  692
      ||| |||||||||||||| |||||||||||||||||||||||||||||| 
seq2  AAGCCCAGTACACAGCACTTCCTCCAAGGCCTCTGCATCAGCTCCTACCT  700

seq1  TCCAGGTTCCTGCCCTGCTTGAGTTCCT-GTCCTGACTTCC-TTCTATGA  740
      |||||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  TCCAGGTTCCTGCCCTGCTTGAGTTCCTGGTCCTGACTTCCTTTCTATGA  750

seq1  TG-AACAGTGATACAGAAGT-GAGCCAAAT-AAACCCTTTCCCTCCCCGT  787
      || ||||||||  ||||||| ||||||||| ||||||||| ||  |||||
seq2  TGAAACAGTGAATCAGAAGTGGAGCCAAATAAAACCCTTTTCCCTCCCGT  800

seq1  TTGATTT-GGGTGTGGTGTTTCACCACAGCAACAGTAACCCTAA  830
      ||||||| ||||||||||||||||||||| ||| ||||||||||
seq2  TTGATTTGGGGTGTGGTGTTTCACCACAGTAACCGTAACCCTAA  844

seq1: chr4_138706157_138707257
seq2: B6Ng01-297K18.g_70_1176 (reverse)

seq1  GTCGAAACTGTAACTAAAGGTGGCATTATGCTT-CCAGAAAAATCTC-AA  48
      |||||| ||||||||||  || ||| ||||||| |||||||||||||  |
seq2  GTCGAAGCTGTAACTAAGTGT-GCAATATGCTTCCCAGAAAAATCTCTCA  49

seq1  GGAAAATATTGGAAGCTA-CAGTAATGGTTGTGAGACCAGGAGCCAAAGG  97
       ||||||| | ||||||| ||||||  | |||||||||||||||||||||
seq2  AGAAAATAATTGAAGCTACCAGTAAATG-TGTGAGACCAGGAGCCAAAGG  98

seq1  GAAGG-GTGGGGAGAGTCAACTGGTCAGTGT--GAAAGCTGGAGA-CAAA  143
      ||||| | ||| ||||||||||| |||||||   |||||| |||| ||||
seq2  GAAGGTGGGGGAAGAGTCAACTGTTCAGTGTTGAAAAGCT-GAGACCAAA  147

seq1  GTGTCTTAGGGCTTTACTGCTGTGAAC-AGACATCATGACCAAGGCAACT  192
      ||||  |||||||||| |||||||||| ||||||||||||||||||||||
seq2  GTGTTCTAGGGCTTTAATGCTGTGAACAAGACATCATGACCAAGGCAACT  197

seq1  CTTATAAGGACAACGTTTAATTGGGGCT-GGCTTGCAGGTTCAGAGGTTC  241
      |||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  CTTATAAGGACAACGTTTAATTGGGGCTGGGCTTGCAAGTTCAGAGGTTC  247

seq1  AGTTCATTATCATCAAGGTGGGAGCATGGTATCCAGTCAGGCATGGTGCA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTATCATCAAGGTGGGAGCATGGTATCCAGTCAGGCATGGTGCA  297

seq1  GGAGGAGCTGAGAGTTCTATGTCTTCATCTGAAGGCTACTAGCAGAAGAC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCTGAGAGTTCTATGTCTTCATCTGAAGGCTACTAGCAGAAGAC  347

seq1  TGGCTTCTAGGCAGCTAGGATGAAGGTCTTAAGCCCACACCCATAGTGAC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTAGGCAGCTAGGATGAAGGTCTTAAGCCCACACCCATAGTGAC  397

seq1  ACACCTACTCCCACAGGGCCACGCCTTCTAACAGTGCCACTCCCTGGTCC  441
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACACCTACTCCCACAGGGCCACGCTTTCTAACAGTGCCACTCCCTGGTCC  447

seq1  AAGCATATGCAAACCATCACACAAAGTTCTTCTCCCAGAACATGGAGGCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATATGCAAACCATCACACAAAGTTCTTCTCCCAGAACATGGAGGCA  497

seq1  CCAAAGTTGTCTAGAAGACAAAAATTATTTCTAATTTAGAGATGGTGACA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTGTCTAGAAGACAAAAATTATTTCTAATTTAGAGATGGTGACA  547

seq1  TTCTTGGAAAGTATGTGGACTGAATCGCTGTGGAAATGGCGTCACATGAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGAAAGTATGTGGACTGAATCGCTGTGGAAATGGCGTCACATGAA  597

seq1  GCTGCCATTCTCCTGATGTTCTGAACTATTTCATTATGGAAATAAGTTCC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATTCTCCTGATGTTCTGAACTATTTCATTATGGAAATAAGTTCC  647

seq1  ATGGCTCCCTTTTATAATAAACTGATGGTGCCCAAACAAAGTAACAGAGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCCCTTTTATAATAAACTGATGGTGCCCAAACAAAGTAACAGAGA  697

seq1  AAGGCTCTTTCCACTTCAATGATTTAATTAAGAAAAAAGTCCCACTGGGC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCTTTCCACTTCAATGATTTAATTAAGAAAAAAGTCCCACTGGGC  747

seq1  AGTGGTGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCG  797

seq1  GATTTCTGAGTTCAAGGCCAGCCTGGTCTGCAGAGTGAGTTCCAGGACAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGAGTTCAAGGCCAGCCTGGTCTGCAGAGTGAGTTCCAGGACAC  847

seq1  AGAGAAATCCTGTCTCAAACAAGTAAACAAACAAACAAATCAGATGTAGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATCCTGTCTCAAACAAGTAAACAAACAAACAAATCAGATGTAGT  897

seq1  CAAATTGACAACCAAGAATAGCCATCACACCAGTAAAAGCTTTTCTCAGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGACAACCAAGAATAGCCATCACACCAGTAAAAGCTTTTCTCAGA  947

seq1  AAAATGATTTTAGATACGAAAAGTATATGATTACCCAGGAAGAAAAAAAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATTTTAGATACGAAAAGTATATGATTACCCAGGAAGAAAAAAAA  997

seq1  AAGTGATTATTACTGTCCAAAAAAAAAAGAAATGTAATCAGGGAGATAGT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATTATTACTGTCCAAAAAAAAAAGAAATGTAATCAGGGAGATAGT  1047

seq1  TTAATTGGCAAGAATGTCAACTGTTCAAGTATAAGGACCTGAGTTTGAAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGGCAAGAATGTCAACTGTTCAAGTATAAGGACCTGAGTTTGAAA  1097

seq1  CCTAGAATTC  1101
      ||||||||||
seq2  CCTAGAATTC  1107