BAC Information

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BAC

Clone NameB6Ng01-297M13
Chromosome4 (Build37)
Map Location 51,031,797 - 51,199,906
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666663, LOC100040979
Downstream geneLOC666681, LOC100040814, LOC384015
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297M13.bB6Ng01-297M13.g
ACCGA093060GA093061
length1,2241,111
definitionB6Ng01-297M13.b B6Ng01-297M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,031,797 - 51,033,041)(51,198,788 - 51,199,906)
sequence
gaattcttggataaagccaatcttcactggggtctagtatatagtatttg
tattgactttggccttattctctggtgatattttgcatagatttctaaag
agatctaaacccatttagattaacagagagagatgtttccttactcagcc
ctagatggaaagtctccatcaaatccctgccctcagctcacagggaatac
agtacaataggaggtagaaaagtgtaagagccagagaagagggagggcac
caagaaaacaaggccctctgaatcaactgagcaaagttcatataaactca
gagacactgaagcagcatgcctggggcctgcacaggtctgcaccaggccc
tctgcattgatgttatggcttccagattagtgttttaatgggattccgag
tgagctaaagactgggtctcttattcttgtgccttctcttggtttctttt
ccttctgttggttttctctgtccaactttgatgttatttattttttatct
tatgttttattttgttatattttaatattttctcttataagcctcttttt
ccccaaatgaaagacagaaaggcaatgaacctggattgaatgggaggtaa
gaaggaatctgggaggacacaggaagcagagaccacaatcaggatgtact
gtgtgagaaaagaatctatttttaataaaatgaaagaataaaagagacaa
tagatgcttcacctgaaaagaaaaaagagaaattttcaacatccttattc
atcagagaaatgcaaatcaaaacaaccctgagattctacctcacactagt
cagaatgtctaaaataaaaaactcaggtcacagcaaatgctggcaaagat
gtggagaaaaaggactcctccattgttcgtgggatctcaagttggtatga
ccactctgaaaatcagtctggctgttcctcagaaatttgggacatagtac
tacctgaggacccagtcttcaagggaagaattctcacatctaccgactgc
caatagttctcgaataatttaaatagaaatagtttagtagaataattcta
tgtattgtaatctccatagtggtaaaattatatacatttaagtttattat
aatcatacaggtacatataatttaaattgcaaatgcattgaatgtttaga
atatagctaactaatgacatgaaatggaagccactctaactatcgttcta
ctcagtcaaatttctcacattgca

gaattcataaaaaataacactaagttttttattattattttctttttaaa
aaaatattagctattttctttatttacatttaaaatgttatcccttttcc
tagtttccttttaaaaaaaatcaccaatcccctctccctacccttaattc
cccaataaaaaacactgtttattagataataaaattggttaatagtccta
agtcctacaagtcatgattagatgaaatcagcaactcatctcatccattt
ctaagagcaaaaagcatgattcaggggcaggtcaacaattttagcacttc
ttgattggagactaggacagatgaaataatttgcacttttaaaaacatgt
tttcaaatgatgcctcttagtagcacaggtagagagctggtagccttgac
caatctccatcagtaaacacagcaagttgctatagtgatttcaacactta
attctttagaaaaataggttaccactggagtgagtgaggtaatcatgtga
ctgcacccttttgttcacagtgtaagaagctagaagtgtcattgctcagt
atgatggcatattaacaaatggtatgaactttttcacattggcccatcaa
ttttgctaagaatgatgttattttcattaatgttacctaatttttttctt
cctgctttcaaatatcttacacagacacagactgacagaaaaccattaga
agaccttgaatattccttatagaaacctaatccagccaatcataccagag
ctcagttgctacttatttggtgatattctatgtagacttttatgtcagtg
agtttttattcaacactagtcattatcacttattttaatgtaattttaga
cagcatagcattaaaaaaaacttttttttatagaggaattataccctttt
taaaggatagttaagggtctgcaaagacatgcacaaagtgattgtcttgt
gagcatgaagaataggcttcagatcccagaactcataaaaagccaggaag
gcatgctaactgactgtctttgagcactatgaggcgagtcaaaaatggtc
ctgaaataggcagatgcaggttttctactgagaatacttgatctcaataa
ataaatgaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_51031797_51033041
seq2: B6Ng01-297M13.b_48_1271

seq1  GAATTCTTGGATAAAGCCAATCTTCACTGGGGTCTAGTATATAGTATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGATAAAGCCAATCTTCACTGGGGTCTAGTATATAGTATTTG  50

seq1  TATTGACTTTGGCCTTATTCTCTGGTGATATTTTGCATAGATTTCTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACTTTGGCCTTATTCTCTGGTGATATTTTGCATAGATTTCTAAAG  100

seq1  AGATCTAAACCCATTTAGATTAACAGAGAGAGATGTTTCCTTACTCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAAACCCATTTAGATTAACAGAGAGAGATGTTTCCTTACTCAGCC  150

seq1  CTAGATGGAAAGTCTCCATCAAATCCCTGCCCTCAGCTCACAGGGAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGGAAAGTCTCCATCAAATCCCTGCCCTCAGCTCACAGGGAATAC  200

seq1  AGTACAATAGGAGGTAGAAAAGTGTAAGAGCCAGAGAAGAGGGAGGGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAATAGGAGGTAGAAAAGTGTAAGAGCCAGAGAAGAGGGAGGGCAC  250

seq1  CAAGAAAACAAGGCCCTCTGAATCAACTGAGCAAAGTTCATATAAACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAACAAGGCCCTCTGAATCAACTGAGCAAAGTTCATATAAACTCA  300

seq1  GAGACACTGAAGCAGCATGCCTGGGGCCTGCACAGGTCTGCACCAGGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACTGAAGCAGCATGCCTGGGGCCTGCACAGGTCTGCACCAGGCCC  350

seq1  TCTGCATTGATGTTATGGCTTCCAGATTAGTGTTTTAATGGGATTCCGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTGATGTTATGGCTTCCAGATTAGTGTTTTAATGGGATTCCGAG  400

seq1  TGAGCTAAAGACTGGGTCTCTTATTCTTGTGCCTTCTCTTGGTTTCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAAAGACTGGGTCTCTTATTCTTGTGCCTTCTCTTGGTTTCTTTT  450

seq1  CCTTCTGTTGGTTTTCTCTGTCCAACTTTGATGTTATTTATTTTTTATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTTGGTTTTCTCTGTCCAACTTTGATGTTATTTATTTTTTATCT  500

seq1  TATGTTTTATTTTGTTATATTTTAATATTTTCTCTTATAAGCCTCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTATTTTGTTATATTTTAATATTTTCTCTTATAAGCCTCTTTTT  550

seq1  CCCCAAATGAAAGACAGAAAGGCAATGAACCTGGATTGAATGGGAGGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAATGAAAGACAGAAAGGCAATGAACCTGGATTGAATGGGAGGTAA  600

seq1  GAAGGAATCTGGGAGGACACAGGAAGCAGAGACCACAATCAGGATGTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATCTGGGAGGACACAGGAAGCAGAGACCACAATCAGGATGTACT  650

seq1  GTGTGAGAAAAGAATCTATTTTTAATAAAATGAAAGAATAAAAGAGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGAAAAGAATCTATTTTTAATAAAATGAAAGAATAAAAGAGACAA  700

seq1  TAGATGCTTCACCTGAAAAGAAAAAAGAGAAATTTTCAACATCCTTATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCTTCACCTGAAAAGAAAAAAGAGAAATTTTCAACATCCTTATTC  750

seq1  ATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCTACCTCACACTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCTACCTCACACTAGT  800

seq1  CAGAATGTCTAAAATAAAAAACTCAGGTCACAGCAAATGCTGGCAAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTCTAAAATAAAAAACTCAGGTCACAGCAAATGCTGGCAAAGAT  850

seq1  GTGGAGAAAAAGGACTCCTCCATTGTTCGTGGGATCTCAAGTTGGTATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAAAAAGGACTCCTCCATTGTTCGTGGGATCTCAAGTTGGTATGA  900

seq1  CCACTCTGAAAATCAGTCTGGCTGTTCCTCAGAAATTT-GGACATAGTAC  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCACTCTGAAAATCAGTCTGGCTGTTCCTCAGAAATTTGGGACATAGTAC  950

seq1  TACCTGAGGACCCAGTCTCAAAGGGAAGAATTCTCAACATCTACCGACTG  999
      ||||||||||||||||||  ||||||||||||||| ||||||||||||||
seq2  TACCTGAGGACCCAGTCTTCAAGGGAAGAATTCTC-ACATCTACCGACTG  999

seq1  CCAATAGTTCCTCGAATAATTTAAATAGAAATAAGTTTAGTAG-ATAATT  1048
      ||||||||| |||||||||||||||||||||| |||||||||| ||||||
seq2  CCAATAGTT-CTCGAATAATTTAAATAGAAAT-AGTTTAGTAGAATAATT  1047

seq1  CTATGTA-TGTAATCTCCATAGGTGGTAAAATTATATACATTTTAAAAGT  1097
      ||||||| ||||||||||||| |||||||||||||||||||||   ||||
seq2  CTATGTATTGTAATCTCCATA-GTGGTAAAATTATATACATTT---AAGT  1093

seq1  TTATTATAATCATACAGGTACATA-AATATAAATATGCAATATGCATTG-  1145
      |||||||||||||||||||||||| ||| ||||| ||||| |||||||| 
seq2  TTATTATAATCATACAGGTACATATAATTTAAAT-TGCAA-ATGCATTGA  1141

seq1  ATGTTTTAAGAATAATAGCATAACTTAGTGACTAGGAATTGAGAGGCCAC  1195
      ||||||  ||||| ||||| |||| || |||| | ||| || || |||||
seq2  ATGTTT--AGAAT-ATAGC-TAAC-TAATGAC-ATGAAATG-GAAGCCAC  1184

seq1  ATCTAAAACTAATTTCGTTCTTACTCACTGACAAAATTTTTCACATTGCA  1245
       |||  |||||   |||||| |||||| |    |||||| ||||||||||
seq2  -TCT--AACTA---TCGTTC-TACTCAGT---CAAATTTCTCACATTGCA  1224


seq1: chr4_51198788_51199906
seq2: B6Ng01-297M13.g_67_1177 (reverse)

seq1  TCTTCATTTTATTTATTGAGATCAAGTA-TCTCAGTAAGAAAACTTGCCA  49
      |||||| ||||||||||||||||||||| ||||||| ||||||| |||  
seq2  TCTTCA-TTTATTTATTGAGATCAAGTATTCTCAGT-AGAAAACCTGC--  46

seq1  ATTCTGCCTATTTCAGGACCATTTTTTTGACTCGGCCTTCATAGTGCTTC  99
        |||||||||||||||||||  |||||||||||  | ||||||||| ||
seq2  -ATCTGCCTATTTCAGGACCA--TTTTTGACTCG--CCTCATAGTGC-TC  90

seq1  AAAGACAGTCAGTTAGCATGCCTTCCTGGC-TTTTATGAGTTCTGGGAAT  148
      |||||||||||||||||||||||||||||| |||||||||||||||| ||
seq2  AAAGACAGTCAGTTAGCATGCCTTCCTGGCTTTTTATGAGTTCTGGG-AT  139

seq1  CTGAAGCCTATTCTTCATGCTCACAAGACAATCACTTTGTGCATGTCTTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCCTATTCTTCATGCTCACAAGACAATCACTTTGTGCATGTCTTT  189

seq1  GCAGACCCTTAACTATCCTTT-AAAAGGGTATAATTCCTCTATAAAAAAA  247
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCAGACCCTTAACTATCCTTTAAAAAGGGTATAATTCCTCTATAAAAAAA  239

seq1  AGTTTTTTTTAATGCTATGCTGTCTAAAATTACATTAAAATAAGTGATAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTTTTAATGCTATGCTGTCTAAAATTACATTAAAATAAGTGATAA  289

seq1  TGACTAGTGTTGAATAAAAACTCACTGACATAAAAGTCTACATAGAATAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGTGTTGAATAAAAACTCACTGACATAAAAGTCTACATAGAATAT  339

seq1  CACCAAATAAGTAGCAACTGAGCTCTGGTATGATTGGCTGGATTAGGTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAATAAGTAGCAACTGAGCTCTGGTATGATTGGCTGGATTAGGTTT  389

seq1  CTATAAGGAATATTCAAGGTCTTCTAATGGTTTTCTGTCAGTCTGTGTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGGAATATTCAAGGTCTTCTAATGGTTTTCTGTCAGTCTGTGTCT  439

seq1  GTGTAAGATATTTGAAAGCAGGAAGAAAAAAATTAGGTAACATTAATGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGATATTTGAAAGCAGGAAGAAAAAAATTAGGTAACATTAATGAA  489

seq1  AATAACATCATTCTTAGCAAAATTGATGGGCCAATGTGAAAAAGTTCATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATCATTCTTAGCAAAATTGATGGGCCAATGTGAAAAAGTTCATA  539

seq1  CCATTTGTTAATATGCCATCATACTGAGCAATGACACTTCTAGCTTCTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTTAATATGCCATCATACTGAGCAATGACACTTCTAGCTTCTTA  589

seq1  CACTGTGAACAAAAGGGTGCAGTCACATGATTACCTCACTCACTCCAGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGAACAAAAGGGTGCAGTCACATGATTACCTCACTCACTCCAGTG  639

seq1  GTAACCTATTTTTCTAAAGAATTAAGTGTTGAAATCACTATAGCAACTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTATTTTTCTAAAGAATTAAGTGTTGAAATCACTATAGCAACTTG  689

seq1  CTGTGTTTACTGATGGAGATTGGTCAAGGCTACCAGCTCTCTACCTGTGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTACTGATGGAGATTGGTCAAGGCTACCAGCTCTCTACCTGTGC  739

seq1  TACTAAGAGGCATCATTTGAAAACATGTTTTTAAAAGTGCAAATTATTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGAGGCATCATTTGAAAACATGTTTTTAAAAGTGCAAATTATTTC  789

seq1  ATCTGTCCTAGTCTCCAATCAAGAAGTGCTAAAATTGTTGACCTGCCCCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCCTAGTCTCCAATCAAGAAGTGCTAAAATTGTTGACCTGCCCCT  839

seq1  GAATCATGCTTTTTGCTCTTAGAAATGGATGAGATGAGTTGCTGATTTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATGCTTTTTGCTCTTAGAAATGGATGAGATGAGTTGCTGATTTCA  889

seq1  TCTAATCATGACTTGTAGGACTTAGGACTATTAACCAATTTTATTATCTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCATGACTTGTAGGACTTAGGACTATTAACCAATTTTATTATCTA  939

seq1  ATAAACAGTGTTTTTTATTGGGGAATTAAGGGTAGGGAGAGGGGATTGGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAGTGTTTTTTATTGGGGAATTAAGGGTAGGGAGAGGGGATTGGT  989

seq1  GATTTTTTTTAAAAGGAAACTAGGAAAAGGGATAACATTTTAAATGTAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTTAAAAGGAAACTAGGAAAAGGGATAACATTTTAAATGTAAA  1039

seq1  TAAAGAAAATAGCTAATATTTTTTTAAAAAGAAAATAATAATAAAAAACT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAATAGCTAATATTTTTTTAAAAAGAAAATAATAATAAAAAACT  1089

seq1  TAGTGTTATTTTTTATGAATTC  1119
      ||||||||||||||||||||||
seq2  TAGTGTTATTTTTTATGAATTC  1111


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