BAC Information

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BAC

Clone NameB6Ng01-297N16
Chromosome4 (Build37)
Map Location 59,578,451 - 59,579,393
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675306, LOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1
Downstream geneHsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik, Snx30, Slc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846, Mup2, LOC620882, LOC100041687, LOC667221, LOC100038948, LOC620997, Mup1, LOC620942
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297N16.bB6Ng01-297N16.g
ACCGA093112GA093113
length1,2101,155
definitionB6Ng01-297N16.b B6Ng01-297N16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggacagccaggactacacagagcaaccctgtcttgaaaaaca
aaaacaaaaaaaacaaacaaaaaaaaaaaatccatgtattttattctctg
agatgatattgtaaatgaaactgctttctccttttcgggttttatgtgat
ataaaaaacaagtgatctgtatgttctgatcttacaccttgcaactttcc
ttctgaatctcttggggttttctctacaggaccatgttatctgtgagcaa
caacaatatggagtttgaataggtatggctcccaaagactcatgtgtttc
aatgctttgtcataaaaggaggtgtggccttgctagagaaagtgtgtcat
tagggggcaggtcttgaagtcttatatgttcgttacccccagtatggcat
acagtccccttctgctgcctgtggatcaagatgtagaactctcagctcct
tctccagcaccatgtctgcctgcagactgccatgcttcccagcatgatga
taatggacttaaaaaaacctctgaaactgtaagccggtctcaattagatg
ttttcctttataaaatttgcgccagtcatgatgtctcttcaaagcagtaa
aaccctaaggaagacagccagttttatttcccatgaaccttactagctct
atgagtgtagtagtgagcgtggcctcctcagctcccagttccaccttctt
aactctggcagctagtgtggtgaggcagccactgagtctatcatatgttc
acctctaagagatcactatctttgttatctgatatccattatcttaaaaa
cactgtcaaaatatctttgttcatcattctgatggtgtgatggttaaatt
taggtgttctcttgactagtgggtacttggacatttggtctaacattact
gtgtatgtatatgagagtaattctgaatgaaattaatgttttaaaccaag
taattcaggctactctccatcctccaaatgttagacttctttcaacaaat
agacagagtaggaggaagctctatgctttcttattctgagacatcatttc
ccttgtccttcaccagggcgctagtctttagccccaaggtctaaggtttc
atagatttatgcattggctttctagctccagaatactgtgaattcccagc
ttctagcagtaggtcatctcaccgtactgacctctcttcacgagcacagt
atagtacgtc
gaattcaacaggaagaaatagctattctaaattcataaatacacaatgaa
ctcagcagcactcagctatagaatacaagcactattagctataaaaagag
agacaaattagaatatattcagaccctttttatatcttctattaatatat
aattatccaaaccaaaatatccacaaggaaacattaagtctatactatat
gccaaaatggtctaacagactgttgaccttgcctgtccccagcaggctgc
agaataagctgtagggtatacactttcttctcgtcagcaagtgagccatc
ctctagggtagaccataggctaggatatatataattcgaatctcagcaaa
ttcagtagaatttaaatcgtggcattatcttctctgagataagagtcagc
aagagaagctttagaaattgtacaaatacgtgtaaattaagcaacattct
catgaatgaacaagccattgaaaaataaaaaggggaagtttaaaatgtct
tgaaaggaatgaaaatgaaaacacagcatattgaaaccttcaggattcag
ttaaagaaacaaaaaaacaaaaaaacaaaaacagtgctcagaggaagtct
acaggaaagagtgcttgcatcaacaaagtagattgcagacacacaacgga
acaatgtatcattcggaactagaagataagaacaaagcagaacttagtga
aaaagaaagaaattacaaataagcacattctatgacaagcctggggctat
ggaggctcgggtagtaaaatgctcacactgaaaacacagggacctgagtt
aatttccagaatccttatacaaaaagtcccgagtggtggcctgttgggtg
gcagagacagttggatcccttggggctccttggccagcccagctagacta
gccagtgagcttaaatttaagaccccaaactatgtaaccagtggaaggaa
atagaggagaaatgccttagaacaacagtattgacgagattctttttggg
tctgaccttaaagcacaggaaacgaaagcaatattgacatacacacgata
atatagattaaaaaaatatacaattactgggtgaatatgaaagaaaggga
gactcaatgcctggtgggtgaacatatggaataattgctacaattatgga
taact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_59578451_59579393
seq2: B6Ng01-297N16.g_288_1221

seq1  GTTGACCTTGCCTGTCCCCAGCAGGCTGCAGAATAAGCTGTAGGGTATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCTTGCCTGTCCCCAGCAGGCTGCAGAATAAGCTGTAGGGTATAC  50

seq1  ACTTTCTTCTCGTCAGCAAGTGAGCCATCCTCTAGGGTAGACCATAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTCTCGTCAGCAAGTGAGCCATCCTCTAGGGTAGACCATAGGCT  100

seq1  AGGATATATATAATTCGAATCTCAGCAAATTCAGTAGAATTTAAATCGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATATATAATTCGAATCTCAGCAAATTCAGTAGAATTTAAATCGTG  150

seq1  GCATTATCTTCTCTGAGATAAGAGTCAGCAAGAGAAGCTTTAGAAATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATCTTCTCTGAGATAAGAGTCAGCAAGAGAAGCTTTAGAAATTGT  200

seq1  ACAAATACGTGTAAATTAAGCAACATTCTCATGAATGAACAAGCCATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACGTGTAAATTAAGCAACATTCTCATGAATGAACAAGCCATTGA  250

seq1  AAAATAAAAAGGGGAAGTTTAAAATGTCTTGAAAGGAATGAAAATGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAAGGGGAAGTTTAAAATGTCTTGAAAGGAATGAAAATGAAAA  300

seq1  CACAGCATATTGAAACCTTCAGGATTCAGTTAAAGAAACAAAAAAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATATTGAAACCTTCAGGATTCAGTTAAAGAAACAAAAAAACAAA  350

seq1  AAAACAAAAACAGTGCTCAGAGGAAGTCTACAGGAAAGAGTGCTTGCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACAGTGCTCAGAGGAAGTCTACAGGAAAGAGTGCTTGCATC  400

seq1  AACAAAGTAGATTGCAGACACACAACGGAACAATGTATCATTCGGAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGTAGATTGCAGACACACAACGGAACAATGTATCATTCGGAACTA  450

seq1  GAAGATAAGAACAAAGCAGAACTTAGTGAAAAAGAAAGAAATTACAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAAGAACAAAGCAGAACTTAGTGAAAAAGAAAGAAATTACAAATA  500

seq1  AGCACATTCTATGACAAGCCTGGGGCTATGGAGGCTCGGGTAGTAAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATTCTATGACAAGCCTGGGGCTATGGAGGCTCGGGTAGTAAAATG  550

seq1  CTCACACTGAAAACACAGGGACCTGAGTTAATTTCCAGAATCCTTATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTGAAAACACAGGGACCTGAGTTAATTTCCAGAATCCTTATACA  600

seq1  AAAAGTCCCGAGTGGTGGCCTGTTGGGTGGCAGAGACAGTTGGATCCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCCCGAGTGGTGGCCTGTTGGGTGGCAGAGACAGTTGGATCCCTT  650

seq1  GGGGCTCCTTGGCCAGCCCAGCTAGACTAGCCAGTGAGCTTAAATTTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCCTTGGCCAGCCCAGCTAGACTAGCCAGTGAGCTTAAATTTAAG  700

seq1  ACCCCAAACTATGTAACCAGTGGAAGGAAATAGAGGAGAAATGCCTTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAACTATGTAACCAGTGGAAGGAAATAGAGGAGAAATGCCTTAGA  750

seq1  ACAACAGTATTGACGAAGATC-TTTTGGGTCTGACCCTTAAAGCACAGGA  799
      ||||||||||||||||   || |||||||||||| |||||||||||||||
seq2  ACAACAGTATTGACGAGATTCTTTTTGGGTCTGA-CCTTAAAGCACAGGA  799

seq1  AACGAAAGCAATAATTGACCATACACACAAATAAATAATAGATTTAAAAA  849
      |||||||||||| ||||| |||||||||  ||||   ||||| |||||||
seq2  AACGAAAGCAAT-ATTGA-CATACACAC-GATAA--TATAGA-TTAAAAA  843

seq1  AATATACCAAATAACT-GGTGAATATGAAAAGAAAGGGAGACTCACATGC  898
      |||||||  ||| ||| |||||||||| ||||||||||||||||| ||||
seq2  AATATAC--AATTACTGGGTGAATATG-AAAGAAAGGGAGACTCA-ATGC  889

seq1  --TGTTGGTGAACATATGAATTAATATTGCTACTATTATGGGTAACT  943
         || |||||||||||| | ||  |||||||| ||||||| |||||
seq2  CTGGTGGGTGAACATATGGAATA--ATTGCTACAATTATGGATAACT  934