BAC Information

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BAC

Clone NameB6Ng01-297P18
Chromosome4 (Build37)
Map Location 37,856,127 - 37,992,214
singlet/doubletdoublet
Overlap geneLOC277771
Upstream geneLOC100042132, LOC545600, LOC621458
Downstream geneLOC100039448, LOC665520, LOC100039487
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297P18.bB6Ng01-297P18.g
ACCGA093209GA093210
length1,1851,195
definitionB6Ng01-297P18.b B6Ng01-297P18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,991,033 - 37,992,214)(37,856,127 - 37,857,333)
sequence
gaattctaatgaaaaactgtacaaccacagagctattttattaagcatgc
ctacaaaatcagcattgtgttgataggtcaagttttataaccagaataaa
gtacattgaggatattcaaccatgcttcagtagctgctgagtgccttgtg
aactaacacaaatctcatccgatgatgagtactgtactggacaaggatga
catcattaggcttagttctaaaccctgcatgctagaaaaacttttaggaa
atgtgaatgtctcatcttcctccatatgatagttgtgttcttgttgactc
ctgtaatggcattagggcttcaattctatgctccttttgcacggagcttg
ccttcatctgaatttttctgatcttacagttttggttgtgagcatagcca
ttaatggcggaacatatcttcagtctaaactttctagacttttaaacaaa
ttcaccctctttgacagaacgtctaaccacaatccttcttggtccaactg
caaattttccaagattttctgaaatgtttgtctacattcctgattcttac
attaaattcaatttaagattaattcaatttaagaaaatcagagaaaacct
tgcgatggtgatctcctaaaattcaactaatttaataactgcttttattt
ttacttagtacttatgaaaattgtaaaaaaggtaaaatcataagactttt
aaaaatagtaaaatgaattatcatttcttagccatcaaaagttaacagct
acagaaaacatgagttcgtgcaaatgaagtgctttaaaatgtaataaaaa
caatgcataagtaaaagaaatgaataagaaataatattttccttatttaa
atgtaaatagttgcttacaactgaaattttcccttgggaattactaaaaa
gtcttgctttctctatttattaaaagacagataacttagcatgatttcaa
tcaagttggctttgtagcagtaactaatattaaaaatatcagaaatatta
atattaagttattacttcagttacgactaacattgcttgttttctgtagg
gttaagaaaccctatgtttttttcttctgaccttccacattaaaatgaat
accatattactattctgttcatgatgtacttgagcatcagctatggaaga
aatttttaattgaaacttcatcagcattggtcttg
gaattctctataaattatctggcatttaccctaagaaacacacacacaca
cacacacacacacacacacacacacgacacacaaataattttaagaacat
gtaaacttttatgatcccctgtgattgttaaaagtttcttggtgttattt
tttctcccaacaatgttgtttctcccattctgtatttttgttatgttttg
cattcactactagaatttctttcccaacttgtatttatttaaacttaaca
catgtcacatcaattaaaataaattccccaacccaatggaagatgacaat
aagggaagtgaatcttctagggaaatatcagaactctctaaatttcatat
tttattgtaaactcacataaatcttaaaaccaatggctgttttttctaaa
ataaaatatattatcacataatctctgttactttgtaatgtattattaaa
gtaatatattatcaaagtaatcttctctattactgactaaaatttatatt
ggaaaatttgaagaatgaagcaaatttgttaataattttaatgagtagtc
acttgaaatctaaggaaacattaattatttttaaatttttttatcaattg
tggtatacttcgtaattttttcaaaatggataaaaactttaatgttgcta
tttcttatttaagagactataatttcaaaaggaccattgctattatgtgt
tacataatacagtggaatcagttgtttataacagttgaaggtatactcta
aataactaaagcaacatttaacataaacaagagaaaattttctgataaca
tgaataaagagtttttaaaagttggattacaaaagtttgggtgtgaatag
gaaaacagacacatcatttatgttgtcactaatattatccagtgattgcc
aaactacttaagagtctcttcaaagttgtatgaacaacctttacttaaat
tcagaaaatagaaatgaaagaaatatgaatatggggcaatgtttaaatac
tgttgatataaaccatcacattattgctcctctaaaaatgtaacctaaaa
tatacttcattgatagcctgtcattatatcagcataaatactgaaatgcc
accttgtagattataaccacgatagtaaggatattctaggtttaccaata
ccaacctatttagaatgattgcctaaccaaggggtttgaatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_37991033_37992214
seq2: B6Ng01-297P18.b_51_1235 (reverse)

seq1  CAAGAACAATACTGATGAAAATTTTCCAATTAAAAA-TTCTCTCATACCT  49
      ||||| |||| ||||||||    || |||||||||| ||||  |||| ||
seq2  CAAGACCAATGCTGATGAA---GTTTCAATTAAAAATTTCTTCCATAGCT  47

seq1  GATGCTTCAAGTTACAATCATGAACAGAATAGTTATAT-GTATTCATTTT  98
      ||||| ||||| ||| ||||||||||||||||| |||| |||||||||||
seq2  GATGC-TCAAG-TAC-ATCATGAACAGAATAGTAATATGGTATTCATTTT  94

seq1  AATGTG--AAGTCAGAAGAAAAAAACATAGG--TTC-TAACCCTACAGAA  143
      ||||||  | |||||||||||||||||||||  ||| |||||||||||||
seq2  AATGTGGAAGGTCAGAAGAAAAAAACATAGGGTTTCTTAACCCTACAGAA  144

seq1  AAC-AGCAATGTTAGTCGTAACTGAAGTAAT-ACTTAATATTAATATTTC  191
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AACAAGCAATGTTAGTCGTAACTGAAGTAATAACTTAATATTAATATTTC  194

seq1  TGATATTTTTAATATTAGTTACTGCTACAAAGCCAACTTGATTGAAATCA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTTTAATATTAGTTACTGCTACAAAGCCAACTTGATTGAAATCA  244

seq1  TGCTAAGTTATCTGTCTTTTAATAAATAGAGAAAGCAAGACTTTTTAGTA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGTTATCTGTCTTTTAATAAATAGAGAAAGCAAGACTTTTTAGTA  294

seq1  ATTCCCAAGGGAAAATTTCAGTTGTAAGCAACTATTTACATTTAAATAAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAAGGGAAAATTTCAGTTGTAAGCAACTATTTACATTTAAATAAG  344

seq1  GAAAATATTATTTCTTATTCATTTCTTTTACTTATGCATTGTTTTTATTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATTATTTCTTATTCATTTCTTTTACTTATGCATTGTTTTTATTA  394

seq1  CATTTTAAAGCACTTCATTTGCACGAACTCATGTTTTCTGTAGCTGTTAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAAGCACTTCATTTGCACGAACTCATGTTTTCTGTAGCTGTTAA  444

seq1  CTTTTGATGGCTAAGAAATGATAATTCATTTTACTATTTTTAAAAGTCTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGATGGCTAAGAAATGATAATTCATTTTACTATTTTTAAAAGTCTT  494

seq1  ATGATTTTACCTTTTTTACAATTTTCATAAGTACTAAGTAAAAATAAAAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTACCTTTTTTACAATTTTCATAAGTACTAAGTAAAAATAAAAG  544

seq1  CAGTTATTAAATTAGTTGAATTTTAGGAGATCACCATCGCAAGGTTTTCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATTAAATTAGTTGAATTTTAGGAGATCACCATCGCAAGGTTTTCT  594

seq1  CTGATTTTCTTAAATTGAATTAATCTTAAATTGAATTTAATGTAAGAATC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTCTTAAATTGAATTAATCTTAAATTGAATTTAATGTAAGAATC  644

seq1  AGGAATGTAGACAAACATTTCAGAAAATCTTGGAAAATTTGCAGTTGGAC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGTAGACAAACATTTCAGAAAATCTTGGAAAATTTGCAGTTGGAC  694

seq1  CAAGAAGGATTGTGGTTAGACGTTCTGTCAAAGAGGGTGAATTTGTTTAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGATTGTGGTTAGACGTTCTGTCAAAGAGGGTGAATTTGTTTAA  744

seq1  AAGTCTAGAAAGTTTAGACTGAAGATATGTTCCGCCATTAATGGCTATGC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAGAAAGTTTAGACTGAAGATATGTTCCGCCATTAATGGCTATGC  794

seq1  TCACAACCAAAACTGTAAGATCAGAAAAATTCAGATGAAGGCAAGCTCCG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCAAAACTGTAAGATCAGAAAAATTCAGATGAAGGCAAGCTCCG  844

seq1  TGCAAAAGGAGCATAGAATTGAAGCCCTAATGCCATTACAGGAGTCAACA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAGGAGCATAGAATTGAAGCCCTAATGCCATTACAGGAGTCAACA  894

seq1  AGAACACAACTATCATATGGAGGAAGATGAGACATTCACATTTCCTAAAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAACTATCATATGGAGGAAGATGAGACATTCACATTTCCTAAAA  944

seq1  GTTTTTCTAGCATGCAGGGTTTAGAACTAAGCCTAATGATGTCATCCTTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTAGCATGCAGGGTTTAGAACTAAGCCTAATGATGTCATCCTTG  994

seq1  TCCAGTACAGTACTCATCATCGGATGAGATTTGTGTTAGTTCACAAGGCA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTACAGTACTCATCATCGGATGAGATTTGTGTTAGTTCACAAGGCA  1044

seq1  CTCAGCAGCTACTGAAGCATGGTTGAATATCCTCAATGTACTTTATTCTG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGCTACTGAAGCATGGTTGAATATCCTCAATGTACTTTATTCTG  1094

seq1  GTTATAAAACTTGACCTATCAACACAATGCTGATTTTGTAGGCATGCTTA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAAACTTGACCTATCAACACAATGCTGATTTTGTAGGCATGCTTA  1144

seq1  ATAAAATAGCTCTGTGGTTGTACAGTTTTTCATTAGAATTC  1182
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAGCTCTGTGGTTGTACAGTTTTTCATTAGAATTC  1185

seq1: chr4_37856127_37857333
seq2: B6Ng01-297P18.g_67_1261

seq1  GAATTCTCTATAAATTATCTGGCATTTACCCTAAGAAACACACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATAAATTATCTGGCATTTACCCTAAGAAACACACACACACA  50

seq1  CACACACACACACACACACACACACGACACACAAATAATTTTAAGAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACGACACACAAATAATTTTAAGAACAT  100

seq1  GTAAACTTTTATGATCCCCTGTGATTGTTAAAAGTTTCTTGGTGTTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTTTTATGATCCCCTGTGATTGTTAAAAGTTTCTTGGTGTTATTT  150

seq1  TTTCTCCCAACAATGTTGTTTCTCCCATTCTGTATTTTTGTTATGTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCAACAATGTTGTTTCTCCCATTCTGTATTTTTGTTATGTTTTG  200

seq1  CATTCACTACTAGAATTTCTTTCCCAACTTGTATTTATTTAAACTTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACTACTAGAATTTCTTTCCCAACTTGTATTTATTTAAACTTAACA  250

seq1  CATGTCACATCAATTAAAATAAATTCCCCAACCCAATGGAAGATGACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCACATCAATTAAAATAAATTCCCCAACCCAATGGAAGATGACAAT  300

seq1  AAGGGAAGTGAATCTTCTAGGGAAATATCAGAACTCTCTAAATTTCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGTGAATCTTCTAGGGAAATATCAGAACTCTCTAAATTTCATAT  350

seq1  TTTATTGTAAACTCACATAAATCTTAAAACCAATGGCTGTTTTTTCTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTAAACTCACATAAATCTTAAAACCAATGGCTGTTTTTTCTAAA  400

seq1  ATAAAATATATTATCACATAATCTCTGTTACTTTGTAATGTATTATTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATATTATCACATAATCTCTGTTACTTTGTAATGTATTATTAAA  450

seq1  GTAATATATTATCAAAGTAATCTTCTCTATTACTGACTAAAATTTATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATATTATCAAAGTAATCTTCTCTATTACTGACTAAAATTTATATT  500

seq1  GGAAAATTTGAAGAATGAAGCAAATTTGTTAATAATTTTAATGAGTAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATTTGAAGAATGAAGCAAATTTGTTAATAATTTTAATGAGTAGTC  550

seq1  ACTTGAAATCTAAGGAAACATTAATTATTTTTAAATTTTTTTATCAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAATCTAAGGAAACATTAATTATTTTTAAATTTTTTTATCAATTG  600

seq1  TGGTATACTTCGTAATTTTTTCAAAATGGATAAAAACTTTAATGTTGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATACTTCGTAATTTTTTCAAAATGGATAAAAACTTTAATGTTGCTA  650

seq1  TTTCTTATTTAAGAGACTATAATTTCAAAAGGACCATTGCTATTATGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATTTAAGAGACTATAATTTCAAAAGGACCATTGCTATTATGTGT  700

seq1  TACATAATACAGTGGAATCAGTTGTTTATAACAGTTGAAGGTATACTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATACAGTGGAATCAGTTGTTTATAACAGTTGAAGGTATACTCTA  750

seq1  AATAACTAAAGCAACATTTAACATAAACAAGAGAAAATTTTCTGATAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTAAAGCAACATTTAACATAAACAAGAGAAAATTTTCTGATAACA  800

seq1  TGAATAAAGAGTTTTTAAAAGTTGGATTACAAAAGTTTGGGTGTGAATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAGAGTTTTTAAAAGTTGGATTACAAAAGTTTGGGTGTGAATAG  850

seq1  GAAAACAGACACATCA-TTATGTTGTCACTAATATTATCCAGTGATTGCC  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAAAACAGACACATCATTTATGTTGTCACTAATATTATCCAGTGATTGCC  900

seq1  AAACTACTTAAGAGTCTCTTCAAAGTTGTATGAACAACCTTTACTTAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACTTAAGAGTCTCTTCAAAGTTGTATGAACAACCTTTACTTAAAT  950

seq1  TCAG-AAATAGAAATGAAAGAAATATGAATATTGGGGCAATGTTTAAATA  998
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCAGAAAATAGAAATGAAAGAAATATGAATA-TGGGGCAATGTTTAAATA  999

seq1  CTGTTGATATTAAACCATTCACAATAATTGCT-CTCTAAAAATGTAACCT  1047
      ||||||||| ||||||| |||| || |||||| |||||||||||||||||
seq2  CTGTTGATA-TAAACCA-TCAC-ATTATTGCTCCTCTAAAAATGTAACCT  1046

seq1  AAAATTATACTTCATTTGATAG-CTGTCATTATATCCAGCATAAATACTG  1096
      |||| ||||||||| ||||||| |||||||||||| ||||||||||||||
seq2  AAAA-TATACTTCA-TTGATAGCCTGTCATTATAT-CAGCATAAATACTG  1093

seq1  AAATGCCAACCTGTAGATTATAA-CACAACAGAAAAATTAAGGATAATCT  1145
      |||||||| | |||||||||||| ||| | ||      |||||||| |||
seq2  AAATGCCACCTTGTAGATTATAACCACGATAG------TAAGGATATTCT  1137

seq1  AAGTATTTAACAAATAACAAACATATTTTAGAATGATTTGCTTACCAA-A  1194
      | |  |||| |||   || ||| || ||||||||||||  || |||||  
seq2  AGG--TTTACCAA--TACCAACCTA-TTTAGAATGATTGCCTAACCAAGG  1182

seq1  GGTTTGAATTTTA  1207
      |||||||||||||
seq2  GGTTTGAATTTTA  1195