BAC Information

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BAC

Clone NameB6Ng01-298F12
Chromosome4 (Build37)
Map Location 67,294,048 - 67,425,957
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667499, Tlr4, LOC100039379, Hmgb1-rs18
Downstream geneLOC433715, Tcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298F12.bB6Ng01-298F12.g
ACCGA093476GA093477
length1,0791,161
definitionB6Ng01-298F12.b B6Ng01-298F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,294,048 - 67,295,124)(67,424,787 - 67,425,957)
sequence
gaattctcaggtagtcttcacttgatagtgtttgaggactcagtgctatt
gaaatatgcatagctgctgactctccctgtgttctctttctacctttcaa
gatctggatactattggtaaaatcaaagttctgaagttgggttctgctca
gcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagc
agcaacagcagcagaggaatcttagccctaaataagctggtccaggcaag
tcttactttcagtggtccgggctttcagtgaaagtaaggctctacaaagc
ttactatttggaggaagtttgtgcatgctgcttttctttatgaatcacat
tataaagactttctacagtattgaaaaatgttaaattatttctacatcct
ttggctttgttccatgattcagcagccctccatacaatttcactttttga
tttccagagctactatcttgggaagtgtcattagactatttcacagtgag
cagttttgtaattttatttgatatggattgaaaacacttgtaacaaaata
gaatatgaatacattataaatgaattggtattgtaggagaaaaatgctcg
ttacagtgttcatatatctatgggaaattactgatccagcacctgttttt
acccatccttgttctaggaacatgggaagacagtaatattgaaaaaaata
gtctctggccatgtggatctgcatttttggtagtatagacagaaaagcaa
ataagtaacgtatttatcatgtggggtgccaagaactatggaaaacctaa
attggaaaacgatattagaataattctggttcgggaagtggttgtatgct
ttcaaatgggttttcaaggaggagttcttagtcagaagttacattgggaa
agagttttggaatagataagtaaaagaaccagatgatgtctctggcagaa
gtaatggtagataaaaatgctacagggcacatttttctgccatgtaagag
agcagcgtctagacgagggggggggggacaaaactctgatgtgtgagagg
gaaaggagatgcatggaattaagggagac
gaattctctgagttggttgaaaacaggaagcataagagaagcagaggcga
aggtgaagcatgctctgtagataccattatggtggcgcataggcttatat
ctcagtccaaagctagcaactaatgtgaacactgcattcaggcagcccag
cagagcagaccgcatgacgatcgtggtgacctggggtgagatgcagaaga
gagacctttcagaacatggcctgatgtgaagagtagatcaaaagaaaggg
caaatctctgctcctctagtgtgcttcgtatctttgcttgaaagacaact
cagaagggcctgattacatacacttgtcaaagcaaagcacactggcgaag
gtttagtaattcagtataaatttcgaaaaaaagatctgctccaattaata
tttccccattgctatatacatcaaatttagaacttgtggttcatgaaaat
tgtcagccacaaccatataagagtccgaccccctccctggaatgatgata
ttgtcaaactgagtttatgaggaaacaataccagtttgctttaaagccac
tcacaggaatttgattgtctctgctcaagttctgtaaaggggttctacac
ttcctagtttagcactgttcccgcctataggttgtacaagtctccaagga
cttcttatccagaagagacaatcaacttctccttctgtagggtaactgat
aataaactttgtaaaagaaatgctttatttttatgctacttgagttggag
gctgttagaaaaggttagaaatagtatatggatagtgctaaatatatgct
gttgattcaaaactaactcaaaagaagtgacagtctccaaagtgcctgag
acggtttagtctttgacttcagattctattacaaccaacagtattttatg
aagctctagtaagtaatgcacttttaaaaggatttagcgaataaaaaaag
aataaaaacattgtttatatattgcattttcctgtattactcaatctgat
ttgtccacccattcacatgtattagagtgtcatttctacacattgaactg
gtcactattgagagatgatctcacatgacaggtgttatcgatgttaaggt
tcttcagaaggttaggccattgaagcttggacttactttgcaagcttcta
gcttgaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67294048_67295124
seq2: B6Ng01-298F12.b_48_1126

seq1  GAATTCTCAGGTAGTCTTCACTTGATAGTGTTTGAGGACTCAGTGCTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGTAGTCTTCACTTGATAGTGTTTGAGGACTCAGTGCTATT  50

seq1  GAAATATGCATAGCTGCTGACTCTCCCTGTGTTCTCTTTCTACCTTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGCATAGCTGCTGACTCTCCCTGTGTTCTCTTTCTACCTTTCAA  100

seq1  GATCTGGATACTATTGGTAAAATCAAAGTTCTGAAGTTGGGTTCTGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGATACTATTGGTAAAATCAAAGTTCTGAAGTTGGGTTCTGCTCA  150

seq1  GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC  200

seq1  AGCAACAGCAGCAGAGGAATCTTAGCCCTAAATAAGCTGGTCCAGGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGCAGCAGAGGAATCTTAGCCCTAAATAAGCTGGTCCAGGCAAG  250

seq1  TCTTACTTTCAGTGGTCCGGGCTTTCAGTGAAAGTAAGGCTCTACAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTTTCAGTGGTCCGGGCTTTCAGTGAAAGTAAGGCTCTACAAAGC  300

seq1  TTACTATTTGGAGGAAGTTTGTGCATGCTGCTTTTCTTTATGAATCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTTGGAGGAAGTTTGTGCATGCTGCTTTTCTTTATGAATCACAT  350

seq1  TATAAAGACTTTCTACAGTATTGAAAAATGTTAAATTATTTCTACATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGACTTTCTACAGTATTGAAAAATGTTAAATTATTTCTACATCCT  400

seq1  TTGGCTTTGTTCCATGATTCAGCAGCCCTCCATACAATTTCACTTTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTGTTCCATGATTCAGCAGCCCTCCATACAATTTCACTTTTTGA  450

seq1  TTTCCAGAGCTACTATCTTGGGAAGTGTCATTAGACTATTTCACAGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAGCTACTATCTTGGGAAGTGTCATTAGACTATTTCACAGTGAG  500

seq1  CAGTTTTGTAATTTTATTTGATATGGATTGAAAACACTTGTAACAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGTAATTTTATTTGATATGGATTGAAAACACTTGTAACAAAATA  550

seq1  GAATATGAATACATTATAAATGAATTGGTATTGTAGGAGAAAAATGCTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGAATACATTATAAATGAATTGGTATTGTAGGAGAAAAATGCTCG  600

seq1  TTACAGTGTTCATATATCTATGGGAAATTACTGATCCAGCACCTGTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTGTTCATATATCTATGGGAAATTACTGATCCAGCACCTGTTTTT  650

seq1  ACCCATCCTTGTTCTAGGAACATGGGAAGACAGTAATATTGAAAAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCCTTGTTCTAGGAACATGGGAAGACAGTAATATTGAAAAAAATA  700

seq1  GTCTCTGGCCATGTGGATCTGCATTTTTGGTAGTATAGACAGAAAAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGCCATGTGGATCTGCATTTTTGGTAGTATAGACAGAAAAGCAA  750

seq1  ATAAGTAACGTATTTATCATGTGGGGTGCCAAGAACTATGGAAAACCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAACGTATTTATCATGTGGGGTGCCAAGAACTATGGAAAACCTAA  800

seq1  ATTGGAAAACGATATTAGAATAATTCTGGTTCGGGAAGTGGTTGTATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAAACGATATTAGAATAATTCTGGTTCGGGAAGTGGTTGTATGCT  850

seq1  TTCAAATGGGTTTTCAAGGAGGAGTTCTTAGTCAGAAGTTACATTGGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGGGTTTTCAAGGAGGAGTTCTTAGTCAGAAGTTACATTGGGAA  900

seq1  AGAGTTTTGGAATAGATAAGTAAAAGAACCAGATGATGTCTCTGGCAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTTGGAATAGATAAGTAAAAGAACCAGATGATGTCTCTGGCAGAA  950

seq1  GTAATGGTAGATAAAAATGCTACAGGGCACATTTTTCTGGCATGTAAGAG  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTAATGGTAGATAAAAATGCTACAGGGCACATTTTTCTGCCATGTAAGAG  1000

seq1  AGCAGCGTCTAAGACGA-GGGGGGGGGACCAAAACTCTGA--TGTGAGAG  1047
      |||||||||| |||||| |||||||||  |||||||||||  ||||||||
seq2  AGCAGCGTCT-AGACGAGGGGGGGGGGGACAAAACTCTGATGTGTGAGAG  1049

seq1  GGAAGGGAGAATGCATGAGATT-AGGGAGAC  1077
      |||| |||| |||||||  ||| ||||||||
seq2  GGAAAGGAG-ATGCATGGAATTAAGGGAGAC  1079

seq1: chr4_67424787_67425957
seq2: B6Ng01-298F12.g_68_1228 (reverse)

seq1  TTTGTTCTAGCTAGAAGCTGCAAAACTATGTCAAAACTCTCCATTGTGCC  50
      ||||||| |||||||||||   ||| || ||| || || || ||   |||
seq2  TTTGTTCAAGCTAGAAGCTTGCAAAGTAAGTCCAAGCT-TCAAT--GGCC  47

seq1  T-ACTTTCTG-AGAAC--TTACATTCTGATAACA-CTGTCATGTGAGATC  95
      | || ||||| |||||  | ||||   ||||||| |||||||||||||||
seq2  TAACCTTCTGAAGAACCTTAACAT--CGATAACACCTGTCATGTGAGATC  95

seq1  ATCTCTCAATAGTGCCCAGTTCAATGTGTTAGAAATGACAACTCTAATTA  145
      |||||||||||||| ||||||||||||| |||||||||| ||||||| ||
seq2  ATCTCTCAATAGTGACCAGTTCAATGTG-TAGAAATGAC-ACTCTAA-TA  142

seq1  CATGTTGAATGGGTGGACAAATCAGAATTGAGTAATTACAGGAAAATGCA  195
      |||| |||||||||||||||||||| ||||||||| ||||||||||||||
seq2  CATG-TGAATGGGTGGACAAATCAG-ATTGAGTAA-TACAGGAAAATGCA  189

seq1  ATATATTAAACAATG-TTTTATTC-TTTTTTATTCGCTTAAATCCTTTTT  243
      ||||| ||||||||| |||||||| |||||||||||| ||||||| ||||
seq2  ATATA-TAAACAATGTTTTTATTCTTTTTTTATTCGC-TAAATCC-TTTT  236

seq1  AAAAGTGCATTACTTACTAGAGCTTCATAAAATACTGTTTGGTTTGTAAT  293
      |||||||||||||||||||||||||||||||||||||||  | |||||||
seq2  AAAAGTGCATTACTTACTAGAGCTTCATAAAATACTGTT--GGTTGTAAT  284

seq1  AGAATCTTGAAGTCAAAGACTAAACCGTCTCAGGCACTTTGGAGACTGTC  343
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATC-TGAAGTCAAAGACTAAACCGTCTCAGGCACTTTGGAGACTGTC  333

seq1  ACTTCTTTTGAGTTAGTTTTGAATCAACAGCATATATTTAGCACTATCCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTTGAGTTAGTTTTGAATCAACAGCATATATTTAGCACTATCCA  383

seq1  TATACTATTTCTAACCTTTTCTAACAGCCTCCAACTCAAGTAGCATAAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTATTTCTAACCTTTTCTAACAGCCTCCAACTCAAGTAGCATAAAA  433

seq1  ATAAAGCATTTCTTTTACAAAGTTTATTATCAGTTACCCTACAGAAGGAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCATTTCTTTTACAAAGTTTATTATCAGTTACCCTACAGAAGGAG  483

seq1  AAGTTGATTGTCTCTTCTGGATAAGAAGTCCTTGGAGACTTGTACAACCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGATTGTCTCTTCTGGATAAGAAGTCCTTGGAGACTTGTACAACCT  533

seq1  ATAGGCGGGAACAGTGCTAAACTAGGAAGTGTAGAACCCCTTTACAGAAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCGGGAACAGTGCTAAACTAGGAAGTGTAGAACCCCTTTACAGAAC  583

seq1  TTGAGCAGAGACAATCAAATTCCTGTGAGTGGCTTTAAAGCAAACTGGTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCAGAGACAATCAAATTCCTGTGAGTGGCTTTAAAGCAAACTGGTA  633

seq1  TTGTTTCCTCATAAACTCAGTTTGACAATATCATCATTCCAGGGAGGGGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCTCATAAACTCAGTTTGACAATATCATCATTCCAGGGAGGGGG  683

seq1  TCGGACTCTTATATGGTTGTGGCTGACAATTTTCATGAACCACAAGTTCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGACTCTTATATGGTTGTGGCTGACAATTTTCATGAACCACAAGTTCT  733

seq1  AAATTTGATGTATATAGCAATGGGGAAATATTAATTGGAGCAGATCTTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGATGTATATAGCAATGGGGAAATATTAATTGGAGCAGATCTTTT  783

seq1  TTTCGAAATTTATACTGAATTACTAAACCTTCGCCAGTGTGCTTTGCTTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAAATTTATACTGAATTACTAAACCTTCGCCAGTGTGCTTTGCTTT  833

seq1  GACAAGTGTATGTAATCAGGCCCTTCTGAGTTGTCTTTCAAGCAAAGATA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTGTATGTAATCAGGCCCTTCTGAGTTGTCTTTCAAGCAAAGATA  883

seq1  CGAAGCACACTAGAGGAGCAGAGATTTGCCCTTTCTTTTGATCTACTCTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCACACTAGAGGAGCAGAGATTTGCCCTTTCTTTTGATCTACTCTT  933

seq1  CACATCAGGCCATGTTCTGAAAGGTCTCTCTTCTGCATCTCACCCCAGGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAGGCCATGTTCTGAAAGGTCTCTCTTCTGCATCTCACCCCAGGT  983

seq1  CACCACGATCGTCATGCGGTCTGCTCTGCTGGGCTGCCTGAATGCAGTGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACGATCGTCATGCGGTCTGCTCTGCTGGGCTGCCTGAATGCAGTGT  1033

seq1  TCACATTAGTTGCTAGCTTTGGACTGAGATATAAGCCTATGCGCCACCAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTAGTTGCTAGCTTTGGACTGAGATATAAGCCTATGCGCCACCAT  1083

seq1  AATGGTATCTACAGAGCATGCTTCACCTTCGCCTCTGCTTCTCTTATGCT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTATCTACAGAGCATGCTTCACCTTCGCCTCTGCTTCTCTTATGCT  1133

seq1  TCCTGTTTTCAACCAACTCAGAGAATTC  1171
      ||||||||||||||||||||||||||||
seq2  TCCTGTTTTCAACCAACTCAGAGAATTC  1161