BAC Information

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BAC

Clone NameB6Ng01-298J12
Chromosome4 (Build37)4 (Build37)
Map Location 145,696,385 - 145,696,755146,017,676 - 146,018,787
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433
Downstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298J12.bB6Ng01-298J12.g
ACCGA093660GA093661
length3421,106
definitionB6Ng01-298J12.b B6Ng01-298J12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,696,385 - 145,696,755)(146,017,676 - 146,018,787)
sequence
agagggactgcttaattgtgtgcatttttagcccaggagtctagactccc
aatgtgagaagttaggcaggatccgttgtatctgaaggattcagaaccca
ggtgcagtgtcctactacattcagttctggtctagtctggcagcaatctt
gtgggaagctgagcagagtaggtgctgagaagttgtgtttccacaacaga
gttggaggattggttcctgatggggagggtgggcctcctgcatgattagt
taaatttaagaaaaagacaaactagccgggcgtcgtggtgcacgccttta
atcccagcactcgggaggcagaggccagcctggtttacagag
gaattcaagagttatttctgaggctctgaaggcatctacatatttccttt
tttgagcctttttatcttaacctagtaatactagcctggaacactgaact
gaatcttccctattttagttaacacaaatcaccatatctaatacagtgtt
tctaattttttaatgctaaacactgacatagaattcaaattattctttgg
tgggcagactacccaacagttcaatgaatgatttctcagttctaaaacaa
taggaaatatgtgctttcctacgcttttaagcaaccactgtgaaagggtc
tttacaccccaaagggattgttatcaatcagttgaaaaataactactatt
aactttatgatacagccttgcaaaaatattcctgacttcaacgtatgttt
tctgtgaggcatttcctgggaatatgcaacatatattcatctgagtatcc
caagtgcaagttgaaaacaaccaaagcaaacatgtagaaatttcagcttt
attggagttagttacaggacaataggaaaggacttgttgaccagatcaca
agagactcagagtcacttgttatcctataatgtgaaacaagcatttgaga
agaattatgattaatggatactcgaagcatacttcacatctgtaagcata
cttataggataaagaatatgctgactgggtggctcagttagccagatact
cttttaagtataatttttctgaattggctcatttgaattaaatatacaga
gtgttaccagttttattagatattttgagggttttattaaagaccttaaa
tagttcccttttgaaatggattacttctgtctcaatgaaagtgttacaca
atactatcttctgacttcccaacttgtcttcatcttgtaacatttgagga
tgaacagtaaaaaggtgtcatgaaaagctttctacatttccacatgttca
gagtttctcacagcataaataggttgacattatctagatttgaacattac
atgaagtttcacaagattttcatatcacactaattctctagtgtgagctc
aagtgttgcagacacttggtgaataaaaacattatggccacattttccac
agaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145696385_145696755
seq2: B6Ng01-298J12.b_54_395 (reverse)

seq1  CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGACTGCCTCTGCCT  50
      || |||| |||||||||                       ||||||||||
seq2  CTCTGTAAACCAGGCTG-----------------------GCCTCTGCCT  27

seq1  CCCAAGTGCTGGGATTAAAGGCGTGGGCCACCACGCCCGGCTGATTCTTT  100
      ||| |||||||||||||||||||||  |||| |||||||||         
seq2  CCCGAGTGCTGGGATTAAAGGCGTGCACCACGACGCCCGGC---------  68

seq1  GTTTTTATTTTGTCTTTTTCTTAAACTTATCTAATCATGCAGGAGGCCCA  150
           || ||||||||||||||||| ||| ||||||||||||||||||||
seq2  -----TAGTTTGTCTTTTTCTTAAATTTAACTAATCATGCAGGAGGCCCA  113

seq1  CCCTCCCCATCAGGAACCACTCCTCCAACTCTGTTGTGGAAACACAACTT  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCTCCCCATCAGGAACCAATCCTCCAACTCTGTTGTGGAAACACAACTT  163

seq1  CTCAGGATCTACTCTGCTCAGCTTCCCACAAGGTTACTGCCAGACTAGAC  250
      ||||| | |||||||||||||||||||||||| || ||||||||||||||
seq2  CTCAGCACCTACTCTGCTCAGCTTCCCACAAGATTGCTGCCAGACTAGAC  213

seq1  CAGAACTGAATGTAGTAGGACACTGCACCTGGGTTCTGAATCCTTCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGAATGTAGTAGGACACTGCACCTGGGTTCTGAATCCTTCAGAT  263

seq1  ATAATAGATCCTGTCTAACTTCTCACATTATGAGTCTA--------GTCT  342
      | ||  ||||||| |||||||||||||||  |||||||        | ||
seq2  ACAACGGATCCTGCCTAACTTCTCACATTGGGAGTCTAGACTCCTGGGCT  313

seq1  AAAAATGCACACAATTAAGCAGTCCCTCT  371
      |||||||||||||||||||||||||||||
seq2  AAAAATGCACACAATTAAGCAGTCCCTCT  342

seq1: chr4_146017676_146018787
seq2: B6Ng01-298J12.g_67_1172 (reverse)

seq1  ATTTCTGTTGGGAAAAATGTGG-CAT-ATG-TTTTATTCAC--AGTGTCC  45
      ||||||||   | ||||||||| ||| ||| ||||||||||  |||||| 
seq2  ATTTCTGT---GGAAAATGTGGCCATAATGTTTTTATTCACCAAGTGTC-  46

seq1  TGGCAACACTTGAGGCTCCACACTAGAGAATTAGTGTGATTATGAAAATC  95
        ||||||||||| ||| ||||||||||||||||||||| ||||||||||
seq2  -TGCAACACTTGA-GCT-CACACTAGAGAATTAGTGTGA-TATGAAAATC  92

seq1  TTGTGAAAACTTTCATGTAATGTTCAAATCTTAGATAATGTCAA-CTATT  144
      ||||||||   ||||||||||||||||||| ||||||||||||| |||||
seq2  TTGTGAAA--CTTCATGTAATGTTCAAATC-TAGATAATGTCAACCTATT  139

seq1  TATGCTGTGAGAAACTCTGAACATGTGGAAATGTAGAAAGCTTTTCATGA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGTGAGAAACTCTGAACATGTGGAAATGTAGAAAGCTTTTCATGA  189

seq1  CACCTTTTTACTTGTTCATCCTCAAATGTTACAAGATGAAGACAAGTTGG  244
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTTTAC-TGTTCATCCTCAAATGTTACAAGATGAAGACAAGTTGG  238

seq1  GAAGTCAGAAGATAGTATTGTGTAACACTTTCATTGAGACAGAAGTAATC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAGAAGATAGTATTGTGTAACACTTTCATTGAGACAGAAGTAATC  288

seq1  CATTTCAAAAGGGAACTATTTAAGGTCTTTAATAAAACCCTCAAAATATC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAAAAGGGAACTATTTAAGGTCTTTAATAAAACCCTCAAAATATC  338

seq1  TAATAAAACTGGTAACACTCTGTATATTTAATTCAAATGAGCCAATTCAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAACTGGTAACACTCTGTATATTTAATTCAAATGAGCCAATTCAG  388

seq1  AAAAATTATACTTAAAAGAGTATCTGGCTAACTGAGCCACCCAGTCAGCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATACTTAAAAGAGTATCTGGCTAACTGAGCCACCCAGTCAGCA  438

seq1  TATTCTTTATCCTATAAGTATGCTTACAGATGTGAAGTATGCTTCGAGTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTATCCTATAAGTATGCTTACAGATGTGAAGTATGCTTCGAGTA  488

seq1  TCCATTAATCATAATTCTTCTCAAATGCTTGTTTCACATTATAGGATAAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAATCATAATTCTTCTCAAATGCTTGTTTCACATTATAGGATAAC  538

seq1  AAGTGACTCTGAGTCTCTTGTGATCTGGTCAACAAGTCCTTTCCTATTGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTCTGAGTCTCTTGTGATCTGGTCAACAAGTCCTTTCCTATTGT  588

seq1  CCTGTAACTAACTCCAATAAAGCTGAAATTTCTACATGTTTGCTTTGGTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAACTAACTCCAATAAAGCTGAAATTTCTACATGTTTGCTTTGGTT  638

seq1  GTTTTCAACTTGCACTTGGGATACTCAGATGAATATATGTTGCATATTCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAACTTGCACTTGGGATACTCAGATGAATATATGTTGCATATTCC  688

seq1  CAGGAAATGCCTCACAGAAAACATACGTTGAAGTCAGGAATATTTTTGCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAATGCCTCACAGAAAACATACGTTGAAGTCAGGAATATTTTTGCA  738

seq1  AGGCTGTATCATAAAGTTAATAGTAGTTATTTTTCAACTGATTGATAACA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTATCATAAAGTTAATAGTAGTTATTTTTCAACTGATTGATAACA  788

seq1  ATCCCTTTGGGGTGTAAAGACCCTTTCACAGTGGTTGCTTAAAAGCGTAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTTGGGGTGTAAAGACCCTTTCACAGTGGTTGCTTAAAAGCGTAG  838

seq1  GAAAGCACATATTTCCTATTGTTTTAGAACTGAGAAATCATTCATTGAAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCACATATTTCCTATTGTTTTAGAACTGAGAAATCATTCATTGAAC  888

seq1  TGTTGGGTAGTCTGCCCACCAAAGAATAATTTGAATTCTATGTCAGTGTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGTAGTCTGCCCACCAAAGAATAATTTGAATTCTATGTCAGTGTT  938

seq1  TAGCATTAAAAAATTAGAAACACTGTATTAGATATGGTGATTTGTGTTAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTAAAAAATTAGAAACACTGTATTAGATATGGTGATTTGTGTTAA  988

seq1  CTAAAATAGGGAAGATTCAGTTCAGTGTTCCAGGCTAGTATTACTAGGTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATAGGGAAGATTCAGTTCAGTGTTCCAGGCTAGTATTACTAGGTT  1038

seq1  AAGATAAAAAGGCTCAAAAAAGGAAATATGTAGATGCCTTCAGAGCCTCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAAAGGCTCAAAAAAGGAAATATGTAGATGCCTTCAGAGCCTCA  1088

seq1  GAAATAACTCTTGAATTC  1112
      ||||||||||||||||||
seq2  GAAATAACTCTTGAATTC  1106