BAC Information

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BAC

Clone NameB6Ng01-298K09
Chromosome4 (Build37)
Map Location 90,109,388 - 90,275,855
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC664785, Dmrta1, Zfp352, LOC619842, LOC435792
Downstream genePpia-ps4_804.1, LOC664840, LOC664848, LOC100042274, Elavl2, LOC664864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298K09.bB6Ng01-298K09.g
ACCGA093702GA093703
length1,136771
definitionB6Ng01-298K09.b B6Ng01-298K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,109,388 - 90,110,528)(90,275,086 - 90,275,855)
sequence
gaattccagggatgggtatgtacccttttaccttgattggttaactctat
ctctaggaatctgactgattctacagttagttaggctctgcagagttctg
agggggttgctttctcattctagctacctattcttactttagaccagatg
acaagctatcttctgattggctgccctaggctctagttgagtgaccacag
gttcctgaatccaggttctcctttctgggaaacagtaacttaagcctagt
ctcccaaacttcaagtttgcgggctgtcatggagtcagtctggctttcta
gctaactcacttctctcatacacttttactatccaaacctgcacactcta
gacaaatttcattatttataggcaatctagtttgatcacattaacatcta
ccatatttgtggatatttttctttttaaccattctctctcttgcttgctc
gctcgcttgcttatttttttcttttctgcatcaccaggtcaaaattagac
attttatataatcccatttatcctctgttactgtcctgttttatttttca
atgtatttgtgtgtagaagcaactagttcactgcatgtattgcatgtgca
gtttagcatattgaccttcttagtcaagacaacagtacttttaacatcac
cagtaattatactatggctcttctatagctacattcactcgctgaacctt
agaacaaatagtttctatttctatggcctgcacatttttaaattttactt
atcattttaaaatttacttatttttatttaatgaatattgctattttgct
tgcatatatgcctgtgctccttgtgcatgcttcataccaacaaaggcttg
tagaggttgttggatcgcctcattaagtattggaatcaggggtggttgtg
aactgccatgtggggactgggaatcaaatgatagtaatctggaaaagcag
tcagtactcttaaccacacgccgtattttctagaacatttatattacatt
gatttgtggtgttctcccttaagttaaacaatcagaaataagcaaacaac
aaatcccattaatgctattattttatagttgaaaggttttctttatacca
tattttcttatatttaacatgaaggcagaatacttc

gaattcataaccccccaccggtccacacctctgtggccctgccccttaga
agcagcactcaggagctcttgtttttgagactgttcttcctgcattcaga
ttccgtgtcagcaggggatggaagaagcaattttcagattccatggtggg
ctggattaaattactccacaggcccagtgtctcacagacctactagagtg
gattaagtgtttgcttcctttttgcatttgaatatttttttcataaaaga
aagaaaatgttaatacagacctagtaggggagaaaaagacagacaaacaa
attgggtcagcaaagaagcaccctccctatttcctcctggtgtacggcag
ccaagactagttatatttggccacaacaggttgaagctaacctttctgtc
tggatttaagtagctactaatatgtgttgcataaagaaccaagagcaatc
attaggcatttgatttgctcttaattctgttacttcatcattacttttca
gtgatgacttaaattgtggaaacataaaaacaaaactccaatgtatttga
atttggatttggaagaaaaatattgttagtagtttaatagtcaggggtta
ttatcttttaatcgagtgaattattacatggcatttaataattggagtgt
ttagttttctatgttaattagtgagtgataccatctatgtcatgctgaac
ttctgtaaataatagtaaggtattttttttttttgtcttgagtattgtgt
gtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_90109388_90110528
seq2: B6Ng01-298K09.b_47_1182

seq1  GAATTCCAGGGATGGGTATGTACCCTTTTACCTTGATTGGTTAACTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGATGGGTATGTACCCTTTTACCTTGATTGGTTAACTCTAT  50

seq1  CTCTAGGAATCTGACTGATTCTACAGTTAGTTAGGCTCTGCAGAGTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGAATCTGACTGATTCTACAGTTAGTTAGGCTCTGCAGAGTTCTG  100

seq1  AGGGGGTTGCTTTCTCATTCTAGCTACCTATTCTTACTTTAGACCAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTTGCTTTCTCATTCTAGCTACCTATTCTTACTTTAGACCAGATG  150

seq1  ACAAGCTATCTTCTGATTGGCTGCCCTAGGCTCTAGTTGAGTGACCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTATCTTCTGATTGGCTGCCCTAGGCTCTAGTTGAGTGACCACAG  200

seq1  GTTCCTGAATCCAGGTTCTCCTTTCTGGGAAACAGTAACTTAAGCCTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGAATCCAGGTTCTCCTTTCTGGGAAACAGTAACTTAAGCCTAGT  250

seq1  CTCCCAAACTTCAAGTTTGCGGGCTGTCATGGAGTCAGTCTGGCTTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAACTTCAAGTTTGCGGGCTGTCATGGAGTCAGTCTGGCTTTCTA  300

seq1  GCTAACTCACTTCTCTCATACACTTTTACTATCCAAACCTGCACACTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTCACTTCTCTCATACACTTTTACTATCCAAACCTGCACACTCTA  350

seq1  GACAAATTTCATTATTTATAGGCAATCTAGTTTGATCACATTAACATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATTTCATTATTTATAGGCAATCTAGTTTGATCACATTAACATCTA  400

seq1  CCATATTTGTGGATATTTTTCTTTTTAACCATTCTCTCTCTTGCTTGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTGTGGATATTTTTCTTTTTAACCATTCTCTCTCTTGCTTGCTC  450

seq1  GCTCGCTTGCTTATTTTTTTCTTTTCTGCATCACCAGGTCAAAATTAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCTTGCTTATTTTTTTCTTTTCTGCATCACCAGGTCAAAATTAGAC  500

seq1  ATTTTATATAATCCCATTTATCCTCTGTTACTGTCCTGTTTTATTTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATATAATCCCATTTATCCTCTGTTACTGTCCTGTTTTATTTTTCA  550

seq1  ATGTATTTGTGTGTAGAAGCAACTAGTTCACTGCATGTATTGCATGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTGTGTGTAGAAGCAACTAGTTCACTGCATGTATTGCATGTGCA  600

seq1  GTTTAGCATATTGACCTTCTTAGTCAAGACAACAGTACTTTTAACATCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCATATTGACCTTCTTAGTCAAGACAACAGTACTTTTAACATCAC  650

seq1  CAGTAATTATACTATGGCTCTTCTATAGCTACATTCACTCGCTGAACCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATTATACTATGGCTCTTCTATAGCTACATTCACTCGCTGAACCTT  700

seq1  AGAACAAATAGTTTCTATTTCTATGGCCTGCACATTTTTAAATTTTACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAATAGTTTCTATTTCTATGGCCTGCACATTTTTAAATTTTACTT  750

seq1  ATCATTTTAAAATTTACTTATTTTTATTTAATGAATATTGCTATTTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTAAAATTTACTTATTTTTATTTAATGAATATTGCTATTTTGCT  800

seq1  TGCATATATGCCTGTGCTCCTTGTGCATGCTTCATACCAACAAAGGCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATATGCCTGTGCTCCTTGTGCATGCTTCATACCAACAAAGGCTTG  850

seq1  TAGAGGTTGTTGGATCGCCTCATTAAGTATTGGAATCAGGGGTGGTTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTTGTTGGATCGCCTCATTAAGTATTGGAATCAGGGGTGGTTGTG  900

seq1  AACTGCCATGTGGGGACTGGGAATCAAATGATAGTAATCTGGAAAAGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCATGTGGGGACTGGGAATCAAATGATAGTAATCTGGAAAAGCAG  950

seq1  TCAGTACTCTTAACCACCACGCCGTA-TTTCTAGAACATTTATAATACAT  999
      |||||||||||||||| ||||||||| ||||||||||||||||| |||||
seq2  TCAGTACTCTTAACCA-CACGCCGTATTTTCTAGAACATTTATATTACAT  999

seq1  TGAATTTGT-GTGTTCTCCC-TAAGTTAAACAATTCAGAATAAGGCAAAC  1047
      || |||||| |||||||||| |||||||||||| ||||||  | ||||||
seq2  TG-ATTTGTGGTGTTCTCCCTTAAGTTAAACAA-TCAGAAATAAGCAAAC  1047

seq1  AACAAAATTCCCCATTTATGCTATTATTTTATAAGTTGAAAAGGGTTTTC  1097
      ||||||    |||||| ||||||||||||||| ||||||||  |||||||
seq2  AACAAA---TCCCATTAATGCTATTATTTTAT-AGTTGAAA--GGTTTTC  1091

seq1  TTTATACACATATTT--CTATATTATACATGAAAGGCAG-ATACTTC  1141
      ||||||| |||||||   ||||||  ||||| ||||||| |||||||
seq2  TTTATAC-CATATTTTCTTATATTTAACATG-AAGGCAGAATACTTC  1136


seq1: chr4_90275086_90275855
seq2: B6Ng01-298K09.g_66_836 (reverse)

seq1  CACACACACACACACACACACACACAATACTCAAGAC-AAAAAAAAAAAT  49
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CACACACACACACACACACACACACAATACTCAAGACAAAAAAAAAAAAT  50

seq1  ACCTTACTATTATTTACAGAAGTTCAGCATGACATAGATGGTATCACTCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACTATTATTTACAGAAGTTCAGCATGACATAGATGGTATCACTCA  100

seq1  CTAATTAACATAGAAAACTAAACACTCCAATTATTAAATGCCATGTAATA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAACATAGAAAACTAAACACTCCAATTATTAAATGCCATGTAATA  150

seq1  ATTCACTCGATTAAAAGATAATAACCCCTGACTATTAAACTACTAACAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTCGATTAAAAGATAATAACCCCTGACTATTAAACTACTAACAAT  200

seq1  ATTTTTCTTCCAAATCCAAATTCAAATACATTGGAGTTTTGTTTTTATGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTCCAAATCCAAATTCAAATACATTGGAGTTTTGTTTTTATGT  250

seq1  TTCCACAATTTAAGTCATCACTGAAAAGTAATGATGAAGTAACAGAATTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAATTTAAGTCATCACTGAAAAGTAATGATGAAGTAACAGAATTA  300

seq1  AGAGCAAATCAAATGCCTAATGATTGCTCTTGGTTCTTTATGCAACACAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAATCAAATGCCTAATGATTGCTCTTGGTTCTTTATGCAACACAT  350

seq1  ATTAGTAGCTACTTAAATCCAGACAGAAAGGTTAGCTTCAACCTGTTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAGCTACTTAAATCCAGACAGAAAGGTTAGCTTCAACCTGTTGTG  400

seq1  GCCAAATATAACTAGTCTTGGCTGCCGTACACCAGGAGGAAATAGGGAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATATAACTAGTCTTGGCTGCCGTACACCAGGAGGAAATAGGGAGG  450

seq1  GTGCTTCTTTGCTGACCCAATTTGTTTGTCTGTCTTTTTCTCCCCTACTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTTTGCTGACCCAATTTGTTTGTCTGTCTTTTTCTCCCCTACTA  500

seq1  GGTCTGTATTAACATTTTCTTTCTTTTATGAAAAAAATATTCAAATGCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTATTAACATTTTCTTTCTTTTATGAAAAAAATATTCAAATGCAA  550

seq1  AAAGGAAGCAAACACTTAATCCACTCTAGTAGGTCTGTGAGACACTGGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGCAAACACTTAATCCACTCTAGTAGGTCTGTGAGACACTGGGC  600

seq1  CTGTGGAGTAATTTAATCCAGCCCACCATGGAATCTGAAAATTGCTTCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAGTAATTTAATCCAGCCCACCATGGAATCTGAAAATTGCTTCTT  650

seq1  CCATCCCCTGCTGACACGGAATCTGAATGCAGGAAGAACAGTCTCAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCCTGCTGACACGGAATCTGAATGCAGGAAGAACAGTCTCAAAAA  700

seq1  CAAGAGCTCCTGAGTGCTGCTTCTAAGGGGCAGGGCCACAGAGGTGTGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCTCCTGAGTGCTGCTTCTAAGGGGCAGGGCCACAGAGGTGTGGA  750

seq1  CCGGTGGGGGGTTATGAATTC  770
      |||||||||||||||||||||
seq2  CCGGTGGGGGGTTATGAATTC  771


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