BAC Information

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BAC

Clone NameB6Ng01-298M23
Chromosome4 (Build37)
Map Location 146,504,275 - 146,722,138
singlet/doubletdoublet
Overlap geneOTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
Upstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570
Downstream geneEG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298M23.bB6Ng01-298M23.g
ACCGA093823GA093824
length1,027908
definitionB6Ng01-298M23.b B6Ng01-298M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,504,275 - 146,505,435)(146,721,226 - 146,722,138)
sequence
gaattcaactttgtactcacactcagttaaatgcctctgaggaaaaggct
tcttttatttctttccttaactcaacacagatgcattattaatcatcagt
atgtttaatctactcacatatgaggaatcaattagcttgtgacttttttt
tttgcataagtacaatatgggaaaaactaaaattcaccccaatgggaaac
aagtagccctgtcatctgaaaggtgtccatgggcacagaaccctgttctt
taaagtcagacccccaggtttgggcttgtgcttctgagctctcaccgcca
tgctgagctagaatccattttaacctctcataatcatcacaacaggtttt
gaacctaagaggttacatgagaattctggaactcattataatcatgaaaa
gagttgtcttcctagcaacagtctaatgagacgtgggtaaatctcaagtc
tcctttcccccacttatgctgacatgcatgggtgtacatagagtgttaca
gggaacaatcaggaaaccatttatgaacaaacagtgcagtatgtattgta
attttgttctagttttctttctttctttctctctttctctctttctttct
ttctttctttctttctttctttctttctttctttctttctttctgtctct
ttctttctttctttctttctttctttctttctttctttctttctttcttt
ctttctttctttctttccttactttttttttggcaaagatcaggacagtt
ttccaaaggagtttctctttattgcctcatccttcaagcagtaaataata
ttgtcccttgacctaacatcattttaattcaccattttctttgattgagg
catccacctcctctactttttctttaagtctgatatctgtctcccacagg
ttctctatgtatcatttttatttgcctcactgcattttctcttcaggatt
ttttttttgtggtatttctaagcacctattgaacatattttatattttat
attgtccttatttccttcaagccatct
gaattcactgtgctgttctggctggcctggagctcacgatcagatcaggc
tagccacaaacccacagccagtgcttctctggagggagagatcatgcttt
gttctgctttaccttggcattggagcaggcacatttgtgttggcagctgc
ctgtgtgtgttggtcctcactgggctgcaggctcactaccacactggtga
cagaggcactgatgagcagagctcacgtggtttggagtacatttggagtt
gatgtttgggttctacccaaattatttatatataatatttatgtatatat
atatatatatatatatatttatatatatgagtacactcttgctgtcttca
gacacttgagaagagggcatcatatcccattacagataatggaattgaca
tcaggacctctggaagagcagtcagtgctcttaactgctgagctatctct
ccagcccagtgtcttttttatttttacattttatacttaaggttattatt
aatgtgcgtgtgtgcaagtgcatgggagtatgcaccccagtgtgcatgtg
gaggtcaaaggatagcttgctggggttggtcccctctttcactgtgggtt
cctgggctgagactcagctgtcaggcttggcagcaagtgcttctatctgc
taaactgtgttggcctgagaatgtctcttctttataaaggtttggttttt
ttattattttaaactatgtctctgtgtgtttttgtatgtgggttgtgttg
ggacagaaatgcttcaaaccaaacttgggtcctctgcaaagcaatgcttg
accttatggctgagcatcttccagccccagagtgggctttcccagttgga
tctcgcgaactccttctgtccatctttctttattattttaaaatttttaa
aaaagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146504275_146505435
seq2: B6Ng01-298M23.b_48_1074

seq1  GAATTCAACTTTGTACTCACACTCAGCTAAATGCCTCTGAGGAAAAGG--  48
      |||||||||||||||||||||||||| |||||||||||||||||||||  
seq2  GAATTCAACTTTGTACTCACACTCAGTTAAATGCCTCTGAGGAAAAGGCT  50

seq1  -CTTTCATTTCTTTCCTTAACTCAACACAGATGCATTATTAACCACCAGT  97
       |||| |||||||||||||||||||||||||||||||||||| || ||||
seq2  TCTTTTATTTCTTTCCTTAACTCAACACAGATGCATTATTAATCATCAGT  100

seq1  ATGTTTAATCTACTCACATATGAGGAATCAATTAGCTTGTGAC--TTTTT  145
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  ATGTTTAATCTACTCACATATGAGGAATCAATTAGCTTGTGACTTTTTTT  150

seq1  TTTGCATAAGTACAATATGGGAAAAACTAAAAATCACCCCAATGCGAAAC  195
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  TTTGCATAAGTACAATATGGGAAAAACTAAAATTCACCCCAATGGGAAAC  200

seq1  TAGTAGCCCTGTCATCTGAAAGGTGTCCATGGGCACAGAACCCTGTTCTT  245
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCCCTGTCATCTGAAAGGTGTCCATGGGCACAGAACCCTGTTCTT  250

seq1  TAAAGTCAGACCCCCAGGTTTGGGCTTGTGCTTCTGAGCTCTCGCCTCCA  295
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  TAAAGTCAGACCCCCAGGTTTGGGCTTGTGCTTCTGAGCTCTCACCGCCA  300

seq1  TGCTGAGCTAGAATCCATTTTAACCTCTCATAATCATCACAACAGGTTTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCTAGAATCCATTTTAACCTCTCATAATCATCACAACAGGTTTT  350

seq1  GAACCTAAGAGGTCACATGAGAATCCTGGAACTCATTATAATCATGAAAA  395
      ||||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  GAACCTAAGAGGTTACATGAGAATTCTGGAACTCATTATAATCATGAAAA  400

seq1  GAGTTGACTTCCTAGCAACAGTCTAATGAGACTTGGGTAAATCTCGAGTC  445
      |||||| ||||||||||||||||||||||||| |||||||||||| ||||
seq2  GAGTTGTCTTCCTAGCAACAGTCTAATGAGACGTGGGTAAATCTCAAGTC  450

seq1  TCCTTTCCCCCACTTATGCTGACATGCATGGGTGTACATAGAGTGTTACA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCCCCACTTATGCTGACATGCATGGGTGTACATAGAGTGTTACA  500

seq1  GGGAACAATCAGGAAACCATTTATCAACAAACAGTGCATTATGTATTGTA  545
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  GGGAACAATCAGGAAACCATTTATGAACAAACAGTGCAGTATGTATTGTA  550

seq1  ATTTTGTTCTAGTTTTCTTTCTCTCTTTCTGTCTGTCTTTCTTTCTGTCT  595
      |||||||||||||                                     
seq2  ATTTTGTTCTAGT-------------------------------------  563

seq1  TTCTTTCTTTCTCTCTCTCTTTCTTTCTTTCTTTCTCTCTTTCTGTCTGT  645
                         ||||||||||||||||||||||         
seq2  -------------------TTTCTTTCTTTCTTTCTCTCTT---------  585

seq1  CTTTCTTTCTGTCTTTCTTTCTTTCTTTTTTTCTTTCTTTCTTTCTTTCT  695
                 ||| ||||||||||||| |||||||||||||||||||||
seq2  -----------TCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  624

seq1  TTCTTTCTTTCTTTCTTTCTGTCTCTCTCTCTCTCTTTCTTTCTTTCTTT  745
      |||||||||||||||||||||||                           
seq2  TTCTTTCTTTCTTTCTTTCTGTC---------------------------  647

seq1  CTTTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTT  795
             ||||||||                          |||||||||
seq2  -------TCTTTCTT--------------------------TCTTTCTTT  664

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  714

seq1  TTCCTTACTTTTTTTTTTGTGACAAAGATCAGGACAGTTTTCCAAAGGAG  895
      ||||||||||||||||   || ||||||||||||||||||||||||||||
seq2  TTCCTTACTTTTTTTT---TGGCAAAGATCAGGACAGTTTTCCAAAGGAG  761

seq1  TTTCTCTTTATTGCCTCATCCTTCAAGCAGTAAATAATATTGTCCCTTGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTATTGCCTCATCCTTCAAGCAGTAAATAATATTGTCCCTTGA  811

seq1  CCTAACATCATTTTAATTCACCATTTTCTTTGATTGAGGCATCCACCTCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACATCATTTTAATTCACCATTTTCTTTGATTGAGGCATCCACCTCC  861

seq1  TCTACTTTTTCTTTAAGTCTGATAATCTGTCTCCCACAGGTTCTCTATGT  1045
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTACTTTTTCTTTAAGTCTGAT-ATCTGTCTCCCACAGGTTCTCTATGT  910

seq1  ATCATTTTTATTCGCCTCACTGCATTTTCTCTTCAGGA--TTTTTTTTGT  1093
      |||||||||||| |||||||||||||||||||||||||  ||||||||||
seq2  ATCATTTTTATTTGCCTCACTGCATTTTCTCTTCAGGATTTTTTTTTTGT  960

seq1  GGCATTTCTATGCACCTATTGAACATAATTTTAATATTTTATATTGTCCT  1143
      || ||||||| ||||||||||||||||  ||| |||||||||||||||||
seq2  GGTATTTCTAAGCACCTATTGAACATA--TTTTATATTTTATATTGTCCT  1008

seq1  TATTTCCTTC-AGGCATCT  1161
      |||||||||| || |||||
seq2  TATTTCCTTCAAGCCATCT  1027

seq1: chr4_146721226_146722138
seq2: B6Ng01-298M23.g_68_975 (reverse)

seq1  AATCTTTTTTAAAAATTAAAAAAAAATAAAGAGAGCT-GACAGAAGGATG  49
      |||||||||||||||||  |||| |||||||| || | |||||||||| |
seq2  AATCTTTTTTAAAAATTTTAAAATAATAAAGAAAGATGGACAGAAGGA-G  49

seq1  TCTGCAGAGATCCAAACTGGAAAGGCCCACTCTTGGGGCTGG-AGATGGC  98
      |  || ||||||| |||||| || |||||||| ||||||||| |||| ||
seq2  TTCGC-GAGATCC-AACTGGGAAAGCCCACTC-TGGGGCTGGAAGAT-GC  95

seq1  TCAGCCATAAGGTTCAAGTATTGCTTTTGCAGAGAACCCAAGTTTGGTTT  148
      |||||||||||| ||||| ||||| ||||||||| |||||||||||||||
seq2  TCAGCCATAAGG-TCAAGCATTGC-TTTGCAGAGGACCCAAGTTTGGTTT  143

seq1  GAAGCATTTTCTGTCCCAACACATACCCACATACAAAAACACACAGAGAC  198
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAGCA-TTTCTGTCCCAACACA-ACCCACATACAAAAACACACAGAGAC  191

seq1  ATAGTTTAAAATAAT--AAAAAGCAAACCTTTATAAAGAAGAGACATTCT  246
      |||||||||||||||  ||||| |||||||||||||||||||||||||||
seq2  ATAGTTTAAAATAATAAAAAAACCAAACCTTTATAAAGAAGAGACATTCT  241

seq1  CAGGCCAACACAGTTTAGCAGATAGAAGCACTTGCTGCCAAGCCTGACAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAACACAGTTTAGCAGATAGAAGCACTTGCTGCCAAGCCTGACAG  291

seq1  CCTGAGTCTCAGCTCAGGAACCCACAGTGAAAGAGGGGACCAACCCCAGC  346
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  -CTGAGTCTCAGCCCAGGAACCCACAGTGAAAGAGGGGACCAACCCCAGC  340

seq1  AAGCTATCCTTTGACCTCCACATGCCCACTGGGGTGCGTACTCCCACGCA  396
      ||||||||||||||||||||||||| ||||||||||| |||||||| |||
seq2  AAGCTATCCTTTGACCTCCACATGCACACTGGGGTGCATACTCCCATGCA  390

seq1  CTTGCACACACGCACATTAATAATAACCTTAAGTATAAAATGTAAAAATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTGCACACACGCACATTAATAATAACCTTAAGTATAAAATGTAAAAATA  440

seq1  AAAAAGAGACTGGGCTGGAGAGATAGCTCAGCAGTTAAGAGCACTGACTG  496
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACACTGGGCTGGAGAGATAGCTCAGCAGTTAAGAGCACTGACTG  490

seq1  CTCTTCCAGAGGTCCTGATGTCAATTCCATTATCTGTAATGGGATATGAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGAGGTCCTGATGTCAATTCCATTATCTGTAATGGGATATGAT  540

seq1  GCCCTCTTCTCGAGTGTCTGAAGACAGCAAGAGTGTACTCATATATATAT  596
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  GCCCTCTTCTCAAGTGTCTGAAGACAGCAAGAGTGTACTCATATATATAA  590

seq1  ATATATATATATATATATATATATATATATATA-TATATAAATATAATTT  645
      ||||||||||||||||||||||||| ||| ||| |||||| | |||||||
seq2  ATATATATATATATATATATATATACATAAATATTATATATAAATAATTT  640

seq1  GGGTAGAACCCAAACATCAACTCTAAATGCACTCCAAACCACGTGAGCTC  695
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  GGGTAGAACCCAAACATCAACTCCAAATGTACTCCAAACCACGTGAGCTC  690

seq1  TGCTCATCAGTGCCTCTGTCACCAGTGTGGTAGTGAGCCTGCAGCCCAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATCAGTGCCTCTGTCACCAGTGTGGTAGTGAGCCTGCAGCCCAGT  740

seq1  GAGGACCAACACACAGAGGCAGCTGCCAACACAAACGTGCCTGCTCCAAT  795
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  GAGGACCAACACACACAGGCAGCTGCCAACACAAATGTGCCTGCTCCAAT  790

seq1  GCCAAGGTAAAGCAGAACAAAGCATGATCTCTCCCTCCAGAGAAGCACTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGTAAAGCAGAACAAAGCATGATCTCTCCCTCCAGAGAAGCACTG  840

seq1  GCTGTGGGTTTGTGGCTAGCCTGATCTGACCGTGAGCTCCAGGCCAGCCA  895
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTGTGGGTTTGTGGCTAGCCTGATCTGATCGTGAGCTCCAGGCCAGCCA  890

seq1  GAATGGCACAGTGAATTC  913
      |||  |||||||||||||
seq2  GAACAGCACAGTGAATTC  908