BAC Information

Click to search

BAC

Clone NameB6Ng01-298N07
Chromosome4 (Build37)7 (Build37)
Map Location 121,867,226 - 121,867,57547,303,593 - 47,304,744
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOTTMUSG00000008911, EG666914, LOC666921, LOC666927, LOC666931, LOC666937
Downstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298N07.bB6Ng01-298N07.g
ACCGA093839GA093840
length1141,126
definitionB6Ng01-298N07.b B6Ng01-298N07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(121,867,226 - 121,867,575)(47,303,593 - 47,304,744)
sequence
tctacttgttcttctttccttctgttctccatctaactgtaatttctact
ccatagcatcatgtctgttgtcttctggtgtgtgtatgtgtgtgtgtgtg
tgtgtgtgtgtgtg
gaattcactttcaaagcttgcaaaaatcttgttatatccatgttttagag
acttgagaagtttgctgagtaaattgctccttgcttgttctgttttgaca
ggttctatggtcctgtctaaactctacctgtggtggcaaaatgctaagtg
ccagcttcagcccctgtgggctttttaagcatcttcactgaaggttgcga
cctggggaaaaatggctggctactgtgatgttttttattctggcttagag
tgtataaagcaaatcaaagtctatagttcagctgccttcttcctgtagat
agaattttaaaatccatctttattttcaagtgtgaggaaaaggatttagt
tatttgggatcagttttctgtaggctcttgaagtcactggtactgatcat
tctacgtgacaactcttcaaagttcattttgtgatgattaaaactcaagg
actggggaggagaaaagcaggcaacaattacaggtggcaattgtccttgg
taggtattttccctttttcagagatgaagagagaaacagcaatattgaca
cagtcagccttcaaatagtaaagattttctttttctttttctttttcttt
ttctttttctttttctttttctttttctttttctttttctttttcttttt
ctttttctttttctttttctctttttgcttgaagcagataacttggctca
gttcaatgcaccctagccaaaaagaatgcttttatttcttaaatctcatc
tcctttctaaagggtaagaaaatgaaagcctcattccctagtagacatta
gtagaaatcaagttataactcttcatctccctctggctttcaggttagag
acgtggctcagctcacatgcatatgagagaatgctgagaaagatacacca
gcagagaccacaccttgagcactaagttacgtcatttcctttcatccgta
atatcagtgttttagctggtgtacatcaaattctaatctacttcccaata
ctaatagctgaccactcatgagctacatttttctcactcaaaagatgtat
cctgaccatgtttgcttcaggaatcaggtgtgatgatgattgacccgtaa
gtcaggcgtttgaacatgttctctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_121867226_121867575
seq2: B6Ng01-298N07.b_62_165

seq1  CTTCTTTCCTTCTGTTTTTTTTTTAAATATTCCAATCATTGCCTCACTGC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGGTCTGTCCTTCACAGAGTCCCTCCCCCCCATTCACCCTCACCTTCTGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCAGAGAGAGCATGCCCCCACCACATCCCTGGTGCATCAGGTTTCTGAAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  GATTAGTCATTTCCTTTCTCAGTGAGGCCAGGCAAGGCAGGCCTGTAGGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  GAACAAATTCCACAGATAGGCAACAGCCCTTTAGGGACATCCCT----GA  246
                                  |||      | | |||      
seq2  ----------------------------CTT------CTTTCCTTCTGTT  16

seq1  CTCCAGTTGTTATGGTACCCACATGGAGACAGACCTGAACATATGGTGTG  296
      |||||  | | |  |||     ||    ||   ||  | |||        
seq2  CTCCA--TCTAACTGTA-----ATTTCTAC--TCCATAGCAT------CA  51

seq1  TGTCTGTGTGT-TTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGT  345
      ||||||| ||| || || ||||||||||||||||||||||||||||||||
seq2  TGTCTGT-TGTCTTCTG-GTGTGTGTATGTGTGTGTGTGTGTGTGTGTGT  99

seq1  GTGTG  350
      |||||
seq2  GTGTG  104

seq1: chr7_47303593_47304744
seq2: B6Ng01-298N07.g_69_1194

seq1  GAATTCACTTTCAAAGCTTGCAAAAATCTTGTTATATCCATGTTTTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTCAAAGCTTGCAAAAATCTTGTTATATCCATGTTTTAGAG  50

seq1  ACTTGAGAAGTTTGCTGAGTAAATTGCTCCTTGCTTGTTCTGTTTTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGAAGTTTGCTGAGTAAATTGCTCCTTGCTTGTTCTGTTTTGACA  100

seq1  GGTTCTATGGTCCTGTCTAAACTCTACCTGTGGTGGCAAAATGCTAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTATGGTCCTGTCTAAACTCTACCTGTGGTGGCAAAATGCTAAGTG  150

seq1  CCAGCTTCAGCCCCTGTGGGCTTTTTAAGCATCTTCACTGAAGGTTGCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTCAGCCCCTGTGGGCTTTTTAAGCATCTTCACTGAAGGTTGCGA  200

seq1  CCTGGGGAAAAATGGCTGGCTACTGTGATGTTTTTTATTCTGGCTTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGAAAAATGGCTGGCTACTGTGATGTTTTTTATTCTGGCTTAGAG  250

seq1  TGTATAAAGCAAATCAAAGTCTATAGTTCAGCTGCCTTCTTCCTGTAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAAGCAAATCAAAGTCTATAGTTCAGCTGCCTTCTTCCTGTAGAT  300

seq1  AGAATTTTAAAATCCATCTTTATTTTCAAGTGTGAGGAAAAGGATTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTAAAATCCATCTTTATTTTCAAGTGTGAGGAAAAGGATTTAGT  350

seq1  TATTTGGGATCAGTTTTCTGTAGGCTCTTGAAGTCACTGGTACTGATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGGATCAGTTTTCTGTAGGCTCTTGAAGTCACTGGTACTGATCAT  400

seq1  TCTACGTGACAACTCTTCAAAGTTCATTTTGTGATGATTAAAACTCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGTGACAACTCTTCAAAGTTCATTTTGTGATGATTAAAACTCAAGG  450

seq1  ACTGGGGAGGAGAAAAGCAGGCAACAATTACAGGTGGCAATTGTCCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGAGGAGAAAAGCAGGCAACAATTACAGGTGGCAATTGTCCTTGG  500

seq1  TAGGTATTTTCCCTTTTTCAGAGATGAAGAGAGAAACAGCAATATTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTTTCCCTTTTTCAGAGATGAAGAGAGAAACAGCAATATTGACA  550

seq1  CAGTCAGCCTTCAAATAGTAAAGATTTTCTTTTTCTTTTTCTTTTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGCCTTCAAATAGTAAAGATTTTCTTTTTCTTTTTCTTTTTCTTT  600

seq1  TTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTT  650

seq1  CTTTTTCTTTTTCTTTTTCTCTTTTTGCTTGAAGCAGATAACTTGGCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTTTTCTTTTTCTCTTTTTGCTTGAAGCAGATAACTTGGCTCA  700

seq1  GTTCAATGCACCCTAGCCAAAAAGAATGCTTTTATTTCTTAAATCTCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATGCACCCTAGCCAAAAAGAATGCTTTTATTTCTTAAATCTCATC  750

seq1  TCCTTTCT-AAGGGTAAGAAAATGAAAGCCTCATTCCCTAGTAGACATTA  799
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTAAAGGGTAAGAAAATGAAAGCCTCATTCCCTAGTAGACATTA  800

seq1  GTAGAAATCAAGTTATAACTCTTCATCTCCCTCTGGCTTTCAGGTTAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATCAAGTTATAACTCTTCATCTCCCTCTGGCTTTCAGGTTAGAG  850

seq1  ACGGTGGCTCAGCTCACATGCATATGAGAGAATGCTGAGAAAGATACACC  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AC-GTGGCTCAGCTCACATGCATATGAGAGAATGCTGAGAAAGATACACC  899

seq1  AGCAGAAGACCACAACCTTGAGCACTAAAGTTACGTCATTTCCTTTCATC  949
      ||||| ||||||| |||||||||||| |||||||||||||||||||||||
seq2  AGCAG-AGACCAC-ACCTTGAGCACT-AAGTTACGTCATTTCCTTTCATC  946

seq1  CGT-ATATCAGTGTTTTAGCTGGTGTTACATCAAATTCTTATCCTACTTT  998
      ||| ||||||||||||||||||||| ||||||||||||| || |||||| 
seq2  CGTAATATCAGTGTTTTAGCTGGTG-TACATCAAATTCTAAT-CTACTT-  993

seq1  CCCCAATAACTAATAGCTGACCACTCATGAAGCTTACATTTTTCTCACTC  1048
       |||||| ||||||||||||||||||||| ||| ||||||||||||||||
seq2  -CCCAAT-ACTAATAGCTGACCACTCATG-AGC-TACATTTTTCTCACTC  1039

seq1  AAAAGGATGTATCTTGACAATTCCTTTTGGCTTTTCAGG-ATCAGGGTGG  1097
      |||| |||||||| |||| ||    ||||    |||||| ||||||   |
seq2  AAAA-GATGTATCCTGACCAT---GTTTG---CTTCAGGAATCAGG--TG  1080

seq1  TGGTTTGGATGAGATGACCCCCGTAAGTCACAGGCGTTTGAACACTTGTT  1147
      || |   |||||  |||  |||||||||  ||||||||||||||  ||||
seq2  TGAT---GATGA-TTGA--CCCGTAAGT--CAGGCGTTTGAACA--TGTT  1120

seq1  C-CTCA  1152
      | ||||
seq2  CTCTCA  1126