BAC Information

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BAC

Clone NameB6Ng01-299C22
Chromosome4 (Build37)
Map Location 134,014,296 - 134,177,624
singlet/doubletdoublet
Overlap geneStmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1
Upstream gene4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2
Downstream geneLdlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299C22.bB6Ng01-299C22.g
ACCGA094094GA094095
length1,1531,132
definitionB6Ng01-299C22.b B6Ng01-299C22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,014,296 - 134,015,474)(134,176,490 - 134,177,624)
sequence
gaattcactatgtacatagcccaggctttcccttgatttgcagcaatcca
agcctggggcttcccgaatgtggaggttacaggcacagccaccaccagtt
catactgctcacctcttgtttgtattttgctcattcggagaagactggct
ggaggaagcggtggaaagcaatcacccagctacttcgttacagaaatggc
cccagttgaggcgacaagactctccatgcaaggtggtgtcctgagttaga
tcttggaacagaaaaaaaaagagagagagagaccccaacaggaagatgga
ggagccagctcaagccagccgttcagttaacagcgctgcgctaaggcaga
tgtcctagtttggatatgtgtcatttattattctgtgtgaccctgatatc
aaccgttgttgtacagaagaagtttcatgagctcttcacagatgacgaga
tggggcagtcgcacctgagattcgcacaaccatgatgagcaggaccagca
ggattgtgtgaggagacacaggatgagaagtccctctgggacaccttggg
agcctgggcaaatgtctccagttctctgaccacgcctctcatctgtaagg
gataggagtagccattcggacagcacagagtggcaaagccagactagact
gaagctctgctgctcccaaatggcctagttgggccagtgacgtcatctca
gcccatccgatgccaagatagggcagagctagatgagaaaaggctccaca
ccatatgttctaggatctcagtcacagatcaaggcagtaaactagttctt
aaaattgcatgttctgccctctcatgtctacacagcctagagagacagag
tttgagttgagggaaaaaatttcgttaaaaaaaaattgaggtggggtggt
ggtagtgcacacctttgaatcctagcacccaggaaacagaggcagtggat
ctctaagttcaagccagcgagtgagttctacgacagccagggctacataa
gaaccctgtctccaacaaaaacaaacaaaatccccacactcccgtacacc
tccaggaaaaaaacccccaaaaatgccatgtatatgtgatggctctggtc
ttcctttccgtctcatactttcggatctggaacagtctctctggtgtagc
cct
gaattctctgaagagtctatacaggaatattcacatgtcacagaagagga
cgctgaggcacagagaggttgggtactttgatcagtgttgcacagctagc
agactaaaggattggaacccacacttttggtacaaggactcaatccattt
cctgtgagaagagggtcctttccacttctccccctaaacctccagcccca
ctcttgctgctctgactgattgacctaaatcctggtccccaggagtcctc
agacactgccttggcatctcagagctctgcatcacaggaccctgctccct
agtcccctggaagaggcccctggagacatgtcttgggaagctggagggta
tctatggcctgagatgcagccaaggttaggagcccacagtcagatctctg
actggagagaatccttgcaggttcctctggggagagcctggctggccatg
cccagggtagtatgggagtctgttccgcagaagagaggggaagacacaag
atggcggcaggagacagttaggtcagtggagctgtatctagattgggcac
acccaacaccagacccccaaaataggccctattctgcaaggacttggggt
acgggtactaagacaggcacatgacctagagagaccaggtgtagtgacta
ttcctggttgtcaacttgactatatctggaatgaactacaatccagaatt
ggaaggctcaccagtgaccctaatctggaggctgggagatacaagtttct
gacctggatcttggtatggagatcttgaggcatagtggcaatggattcga
gaagattaagacagggagatctccgagttcaaagtcatctgggattaaag
ggtgtggtggcacacacctttagtctgggctacacctttctgctggagac
catataaggacattggaagaagggcgtcctctctctccttcacctgcttg
ccgtgtgggactgagcagccagtggaagcagccagtaaagaacatccctc
atgacctctgtatcagctcctgcttcctgactgctttgagttcagtctga
cttccttgttgatggagagcagtatggaagtgtaagcggataaacccctt
tccttcccccaactggcttcttgtcatgatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134014296_134015474
seq2: B6Ng01-299C22.b_48_1200

seq1  GAATTCACTATGTACATAGCCCAGGCTTTCCCTTGATTTGCAGCAATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTACATAGCCCAGGCTTTCCCTTGATTTGCAGCAATCCA  50

seq1  AGCCTGGGGCTTCCCGAATGTGGAGGTTACAGGCACAGCCACCACCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGGCTTCCCGAATGTGGAGGTTACAGGCACAGCCACCACCAGTT  100

seq1  CATACTGCTCACCTCTTGTTTGTATTTTGCTCATTCGGAGAAGACTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGCTCACCTCTTGTTTGTATTTTGCTCATTCGGAGAAGACTGGCT  150

seq1  GGAGGAAGCGGTGGAAAGCAATCACCCAGCTACTTCGTTACAGAAATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGCGGTGGAAAGCAATCACCCAGCTACTTCGTTACAGAAATGGC  200

seq1  CCCAGTTGAGGCGACAAGACTCTCCATGCAAGGTGGTGTCCTGAGTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTGAGGCGACAAGACTCTCCATGCAAGGTGGTGTCCTGAGTTAGA  250

seq1  TCTTGGAACAGAAAAAAAAAGAGAGAGAGAGACCCCAACAGGAAGATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAACAGAAAAAAAAAGAGAGAGAGAGACCCCAACAGGAAGATGGA  300

seq1  GGAGCCAGCTCAAGCCAGCCGTTCAGTTAACAGCGCTGCGCTAAGGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGCTCAAGCCAGCCGTTCAGTTAACAGCGCTGCGCTAAGGCAGA  350

seq1  TGTCCTAGTTTGGATATGTGTCATTTATTATTCTGTGTGACCCTGATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTAGTTTGGATATGTGTCATTTATTATTCTGTGTGACCCTGATATC  400

seq1  AACCGTTGTTGTACAGAAGAAGTTTCATGAGCTCTTCACAGATGACGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTTGTTGTACAGAAGAAGTTTCATGAGCTCTTCACAGATGACGAGA  450

seq1  TGGGGCAGTCGCACCTGAGATTCGCACAACCATGATGAGCAGGACCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAGTCGCACCTGAGATTCGCACAACCATGATGAGCAGGACCAGCA  500

seq1  GGATTGTGTGAGGAGACACAGGATGAGAAGTCCCTCTGGGACACCTTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTGTGAGGAGACACAGGATGAGAAGTCCCTCTGGGACACCTTGGG  550

seq1  AGCCTGGGCAAATGTCTCCAGTTCTCTGACCACGCCTCTCATCTGTAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGCAAATGTCTCCAGTTCTCTGACCACGCCTCTCATCTGTAAGG  600

seq1  GATAGGAGTAGCCATTCGGACAGCACAGAGTGGCAAAGCCAGACTAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAGTAGCCATTCGGACAGCACAGAGTGGCAAAGCCAGACTAGACT  650

seq1  GAAGCTCTGCTGCTCCCAAATGGCCTAGTTGGGCCAGTGACGTCATCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCTGCTGCTCCCAAATGGCCTAGTTGGGCCAGTGACGTCATCTCA  700

seq1  GCCCATCCGATGCCAAGATAGGGCAGAGCTAGATGAGAAAAGGCTCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATCCGATGCCAAGATAGGGCAGAGCTAGATGAGAAAAGGCTCCACA  750

seq1  CCATATGTTCTAGGATCTCAGTCACAGATCAAGGCAGTAAACTAGTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGTTCTAGGATCTCAGTCACAGATCAAGGCAGTAAACTAGTTCTT  800

seq1  AAAATTGCATGTTCTGCCCTCTCATGTCTACACAGCCTAGAGAGACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCATGTTCTGCCCTCTCATGTCTACACAGCCTAGAGAGACAGAG  850

seq1  TTTGAGTTGAGGGAAAAAATTTCGTTAAAAAAAAAATTGAGGT-GGGTGG  899
      |||||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  TTTGAGTTGAGGGAAAAAATTTCGTT-AAAAAAAAATTGAGGTGGGGTGG  899

seq1  TGGTAGTGCACACCTTTGAATCCTAGCACCCAGGAAACAGAGGCAGGTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGTAGTGCACACCTTTGAATCCTAGCACCCAGGAAACAGAGGCA-GTGG  948

seq1  ATCTCTAAGTTCAAGGCCAGCGAGTGAGTTCTACGACAGCCAGGGCTACA  999
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATCTCTAAGTTCAA-GCCAGCGAGTGAGTTCTACGACAGCCAGGGCTACA  997

seq1  TAAAGAAACCCTGTCTCCAAAAACAAAAAACAAAAACAAAAATCCCCCAA  1049
      |||   |||||||||||||| || || ||||       |||||||||  |
seq2  TAA--GAACCCTGTCTCCAACAAAAACAAAC-------AAAATCCCC--A  1036

seq1  CAACCTCCCGTACCAACCCCCAGGAAAAAAAAACACACAAAAAATTGGCA  1099
      ||  |||||||||  ||| |||||  |||||||| | ||||||  || ||
seq2  CA--CTCCCGTAC--ACCTCCAGG--AAAAAAACCCCCAAAAA--TGCCA  1078

seq1  TGTATATGTGTATGGTTCT-GTCTTTCTTTCTGTCT--TCTTTTCTTTTC  1146
      |||||||||| |||| ||| ||||| ||||| ||||  |  ||||   ||
seq2  TGTATATGTG-ATGGCTCTGGTCTTCCTTTCCGTCTCATACTTTCGGATC  1127

seq1  TGGTTCTTTGAGACAGTCTCTCT-GTGTAGCCCT  1179
      |||         ||||||||||| ||||||||||
seq2  TGG--------AACAGTCTCTCTGGTGTAGCCCT  1153

seq1: chr4_134176490_134177624
seq2: B6Ng01-299C22.g_65_1196 (reverse)

seq1  ACATCATGACCAAGAAGCAAGTTGGGG--AGGAAAGGGTTTATTCGGCTT  48
      ||||||||| |||||||| ||||||||  ||||||||| ||  || ||||
seq2  ACATCATGA-CAAGAAGCCAGTTGGGGGAAGGAAAGGGGTTTATCCGCTT  49

seq1  ACACTTCCATACTGCTCTTCATCACCAAGGAAGTCAGGACTGGAACTC-A  97
      |||||||||||||||||| ||||| ||||||||||| |||| |||||| |
seq2  ACACTTCCATACTGCTCTCCATCAACAAGGAAGTCA-GACT-GAACTCAA  97

seq1  AGCAGGTCAGGAAGCAGGAGCTGATACAGAGGTCATGGAGGGATGTTCTT  147
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGCA-GTCAGGAAGCAGGAGCTGATACAGAGGTCAT-GAGGGATGTTCTT  145

seq1  TACTGGCTTGCTTCCACTGGCTTGCTCAGTCCCACACGGCAAGCAGGTGA  197
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  TACTGGC-TGCTTCCACTGGC-TGCTCAGTCCCACACGGCAAGCAGGTGA  193

seq1  AGGAGAGAGAGGGACGCCCTTCTTCCAATGTCCTTATATGGTCTCCAGCA  247
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAGA-GGACGCCCTTCTTCCAATGTCCTTATATGGTCTCCAGCA  242

seq1  G-AAGGTGTAGCCCAGACTAAAGGTGTGTGCCACCACA-CCTTTAATCCC  295
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAAAGGTGTAGCCCAGACTAAAGGTGTGTGCCACCACACCCTTTAATCCC  292

seq1  AGATGACTTTGAACTCGGAGATCTCCCTGTCTTAATCTTCTCGAATCCAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACTTTGAACTCGGAGATCTCCCTGTCTTAATCTTCTCGAATCCAT  342

seq1  TGCCACTATGCCTCAAGATCTCCATACCAAGATCCAGGTCAGAAACTTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTATGCCTCAAGATCTCCATACCAAGATCCAGGTCAGAAACTTGT  392

seq1  ATCTCCCAGCCTCCAGATTAGGGTCACTGGTGAGCCTTCCAATTCTGGAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCAGCCTCCAGATTAGGGTCACTGGTGAGCCTTCCAATTCTGGAT  442

seq1  TGTAGTTCATTCCAGATATAGTCAAGTTGACAACCAGGAATAGTCACTAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTCATTCCAGATATAGTCAAGTTGACAACCAGGAATAGTCACTAC  492

seq1  ACCTGGTCTCTCTAGGTCATGTGCCTGTCTTAGTACCCGTACCCCAAGTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTCTCTCTAGGTCATGTGCCTGTCTTAGTACCCGTACCCCAAGTC  542

seq1  CTTGCAGAATAGGGCCTATTTTGGGGGTCTGGTGTTGGGTGTGCCCAATC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGAATAGGGCCTATTTTGGGGGTCTGGTGTTGGGTGTGCCCAATC  592

seq1  TAGATACAGCTCCACTGACCTAACTGTCTCCTGCCGCCATCTTGTGTCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACAGCTCCACTGACCTAACTGTCTCCTGCCGCCATCTTGTGTCTT  642

seq1  CCCCTCTCTTCTGCGGAACAGACTCCCATACTACCCTGGGCATGGCCAGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCTTCTGCGGAACAGACTCCCATACTACCCTGGGCATGGCCAGC  692

seq1  CAGGCTCTCCCCAGAGGAACCTGCAAGGATTCTCTCCAGTCAGAGATCTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCTCCCCAGAGGAACCTGCAAGGATTCTCTCCAGTCAGAGATCTG  742

seq1  ACTGTGGGCTCCTAACCTTGGCTGCATCTCAGGCCATAGATACCCTCCAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGGCTCCTAACCTTGGCTGCATCTCAGGCCATAGATACCCTCCAG  792

seq1  CTTCCCAAGACATGTCTCCAGGGGCCTCTTCCAGGGGACTAGGGAGCAGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAAGACATGTCTCCAGGGGCCTCTTCCAGGGGACTAGGGAGCAGG  842

seq1  GTCCTGTGATGCAGAGCTCTGAGATGCCAAGGCAGTGTCTGAGGACTCCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTGATGCAGAGCTCTGAGATGCCAAGGCAGTGTCTGAGGACTCCT  892

seq1  GGGGACCAGGATTTAGGTCAATCAGTCAGAGCAGCAAGAGTGGGGCTGGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCAGGATTTAGGTCAATCAGTCAGAGCAGCAAGAGTGGGGCTGGA  942

seq1  GGTTTAGGGGGAGAAGTGGAAAGGACCCTCTTCTCACAGGAAATGGATTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGGGGGAGAAGTGGAAAGGACCCTCTTCTCACAGGAAATGGATTG  992

seq1  AGTCCTTGTACCAAAAGTGTGGGTTCCAATCCTTTAGTCTGCTAGCTGTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTGTACCAAAAGTGTGGGTTCCAATCCTTTAGTCTGCTAGCTGTG  1042

seq1  CAACACTGATCAAAGTACCCAACCTCTCTGTGCCTCAGCGTCCTCTTCTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGATCAAAGTACCCAACCTCTCTGTGCCTCAGCGTCCTCTTCTG  1092

seq1  TGACATGTGAATATTCCTGTATAGACTCTTCAGAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTGAATATTCCTGTATAGACTCTTCAGAGAATTC  1132