BAC Information

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BAC

Clone NameB6Ng01-299G04
Chromosome4 (Build37)
Map Location 134,196,480 - 134,239,344
singlet/doubletdoublet
Overlap geneMan1c1
Upstream genePigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1
Downstream geneLdlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299G04.bB6Ng01-299G04.g
ACCGA094241GA094242
length1,006900
definitionB6Ng01-299G04.b B6Ng01-299G04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,238,344 - 134,239,344)(134,196,480 - 134,197,382)
sequence
gaattctcaaccttcagccgactcacagcctctcttcggttctgtcccaa
ctgtttatttctaacaaattccttgactgatgcagcctatagaaatgcat
ctcctttgcccgtctctgatttccttccggcttggatgggtggacgttca
gccaaggggcaccagtggagagtcaggcttcagagagggggagatctctc
tgttgttaaatctcgagttaagccctgcttactctggctgctggctgcag
gaagcggtgctgggcaggcgggcgtcttggcagatggccgccttgcctgt
ggtttcctggaggcctgtgtgggagacgatgtttgtgtattggttttcat
ttatgtgtcgctcctattttcatcttcccgaggtacccagatgctatggt
gatagattgattggaaacgactcatttgtcagggttccgtgggggactca
ggttccttgctcacgtgcagtggagtctaaaatgtttaattagatgctga
ggctttctgcatgggtccatctccgccagtcctcctaggatttaagtgag
agaggaactgggggcctttggggctctgcctactcttccttcaccccttc
attttgtctcagggctgccatcctttcaaaggctgctgtttgtcttgttt
ctccccctatcacggttaccctaaaaactgccctcctgtggctgctggaa
tttgcagatctgctccgtgttgccaaacaggtcagacccagaccttttca
agattgacacgcttgaactgagagatgttgagaggaatgttaactgcctt
ctgttccttttctggttcagcctttcctaggaactgacctcattcagccc
caggtgtgaagacaaggaggtgcggtttcacccccactgtgtagagcatg
caggttgtaatgcagccaaagcacaccgtggttgcactaccgaaggtgtc
ctatatatgcgtgcagaagggccgaaggaaagatattggggaagtggggg
gtttgt
ttgttcgaggccaagaggaaaaaccagaaagaagagggaaaaactcttag
gcgggcagtgtggttcagtggtaggagcctgcccattagaactgtgtaga
aagccaacacacacacaaggagatgggtcggaaatgaggtaaccagttca
aatttcccaggtggtcagtgagagggccgggaacaggatgcacactctgg
ttagaagtgtcaggtctgtcccctaaagactatggactgtgctgagctag
gcaccctgggctctttgggccctcgctggtcactgtcattggttctctgt
atggctgtgggccagaagctcattgaggccagacactatacctgccttgc
ctcagtttccctgacaacccagcccaggtcatggtacatactatcggcgt
atctgaggacagtcactctgtttgtgccggagtctcaacataaaggctcc
tccgggctactagtccctagctgcactcagcctagaggctgagggacatg
gtgacaatctgctcaccctgctcccgaatccccacagtcaccctcatttg
tttttacactctgtccctttcacttctgtaaggcagggtgcaggaagagg
gtcgcaggggtggaactctggagtgacagtggggtggaatgggacttgct
tgttttttgagacagggtctcaggtagcccgttagctcactctgctgcca
aagaataatcttaaacctctggcactcctgtctgcacctctcatgtggct
ctgggctgggagcagggcaccctgcacattaagtgagcatgcccagttga
gccactacaaccttcaacccgttcttgccggttcccatttgtcagtgttg
caaacactgccatgccttgtttactctgtctgtgtttcctccagcagcgc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134238344_134239344
seq2: B6Ng01-299G04.b_48_1053 (reverse)

seq1  ACAAACCCACCACT--CCCAATACTCTTTCC-TCGGCCC-TCTGCACGCA  46
      |||||||| |||||  ||||||| ||||||| ||||||| ||||||||||
seq2  ACAAACCCCCCACTTCCCCAATA-TCTTTCCTTCGGCCCTTCTGCACGCA  49

seq1  TATATAGGACACCTTC-GTAGTGCAACCACGGTGTGCTTGTGGCTGCA-T  94
      |||||||||||||||| |||||||||||||||||||||| |||||||| |
seq2  TATATAGGACACCTTCGGTAGTGCAACCACGGTGTGCTT-TGGCTGCATT  98

seq1  ACAACCTGCATGCTCTACACAGTGGGGGTGAAACCGCACCTCCTTGTCTT  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTGCATGCTCTACACAGTGGGGGTGAAACCGCACCTCCTTGTCTT  148

seq1  CACACCTGGGGCTGAATGAGGTCAGTTCCTAGGAAAGGCTGAACCAG-AA  193
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CACACCTGGGGCTGAATGAGGTCAGTTCCTAGGAAAGGCTGAACCAGAAA  198

seq1  AGGAACAGAAGGCAGTTAACATTCCTCTCAACATCTCTCAGTTCAAGCGT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGAAGGCAGTTAACATTCCTCTCAACATCTCTCAGTTCAAGCGT  248

seq1  GTCAATCCTGAAAAGGTCTGGGTCTGACCTGTTTGGCAACACGGAGCAGA  293
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATCTTGAAAAGGTCTGGGTCTGACCTGTTTGGCAACACGGAGCAGA  298

seq1  TCTGCAAATTCCAGCAGCCACAGGAGGGCAGTTTTTAGGGTAACCGTGAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAATTCCAGCAGCCACAGGAGGGCAGTTTTTAGGGTAACCGTGAT  348

seq1  AGGGGGAGAAACAAGACAAACAGCAGCCTTTGAAAGGATGGCAGCCCTGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAGAAACAAGACAAACAGCAGCCTTTGAAAGGATGGCAGCCCTGA  398

seq1  GACAAAATGAAGGGGTGAAGGAAGAGTAGGCAGAGCCCCAAAGGCCCCCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATGAAGGGGTGAAGGAAGAGTAGGCAGAGCCCCAAAGGCCCCCA  448

seq1  GTTCCTCTCTCACTTAAATCCTAGGAGGACTGGCGGAGATGGACCCATGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCTCTCACTTAAATCCTAGGAGGACTGGCGGAGATGGACCCATGC  498

seq1  AGAAAGCCTCAGCATCTAATTAAACATTTTAGACTCCACTGCACGTGAGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCCTCAGCATCTAATTAAACATTTTAGACTCCACTGCACGTGAGC  548

seq1  AAGGAACCTGAGTCCCCCACGGAACCCTGACAAATGAGTCGTTTCCAATC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACCTGAGTCCCCCACGGAACCCTGACAAATGAGTCGTTTCCAATC  598

seq1  AATCTATCACCATAGCATCTGGGTACCTCGGGAAGATGAAAATAGGAGCG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATCACCATAGCATCTGGGTACCTCGGGAAGATGAAAATAGGAGCG  648

seq1  ACACATAAATGAAAACCAATACACAAACATCGTCTCCCACACAGGCCTCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAAATGAAAACCAATACACAAACATCGTCTCCCACACAGGCCTCC  698

seq1  AGGAAACCACAGGCAAGGCGGCCATCTGCCAAGACGCCCGCCTGCCCAGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCACAGGCAAGGCGGCCATCTGCCAAGACGCCCGCCTGCCCAGC  748

seq1  ACCGCTTCCTGCAGCCAGCAGCCAGAGTAAGCAGGGCTTAACTCGAGATT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTTCCTGCAGCCAGCAGCCAGAGTAAGCAGGGCTTAACTCGAGATT  798

seq1  TAACAACAGAGAGATCTCCCCCTCTCTGAAGCCTGACTCTCCACTGGTGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACAGAGAGATCTCCCCCTCTCTGAAGCCTGACTCTCCACTGGTGC  848

seq1  CCCTTGGCTGAACGTCCACCCATCCAAGCCGGAAGGAAATCAGAGACGGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGCTGAACGTCCACCCATCCAAGCCGGAAGGAAATCAGAGACGGG  898

seq1  CAAAGGAGATGCATTTCTATAGGCTGCATCAGTCAAGGAATTTGTTAGAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGATGCATTTCTATAGGCTGCATCAGTCAAGGAATTTGTTAGAA  948

seq1  ATAAACAGTTGGGACAGAACCGAAGAGAGGCTGTGAGTCGGCTGAAGGTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAGTTGGGACAGAACCGAAGAGAGGCTGTGAGTCGGCTGAAGGTT  998

seq1  GAGAATTC  1001
      ||||||||
seq2  GAGAATTC  1006

seq1: chr4_134196480_134197382
seq2: B6Ng01-299G04.g_78_977

seq1  TTGTTCGAGGCCAAGAGGAAAAACCAGAAAGAAGAGGGAAAAACTCTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCGAGGCCAAGAGGAAAAACCAGAAAGAAGAGGGAAAAACTCTTAG  50

seq1  GCGGGCAGTGTGGTTCAGTGGTAGGAGCCTGCCCATTAGAACTGTGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCAGTGTGGTTCAGTGGTAGGAGCCTGCCCATTAGAACTGTGTAGA  100

seq1  AAGCCAACACACACACAAGGAGATGGGTCGGAAATGAGGTAACCAGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAACACACACACAAGGAGATGGGTCGGAAATGAGGTAACCAGTTCA  150

seq1  AATTTCCCAGGTGGTCAGTGAGAGGGCCGGGAACAGGATGCACACTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCAGGTGGTCAGTGAGAGGGCCGGGAACAGGATGCACACTCTGG  200

seq1  TTAGAAGTGTCAGGTCTGTCCCCTAAAGACTATGGACTGTGCTGAGCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGTGTCAGGTCTGTCCCCTAAAGACTATGGACTGTGCTGAGCTAG  250

seq1  GCACCCTGGGCTCTTTGGGCCCTCGCTGGTCACTGTCATTGGTTCTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTGGGCTCTTTGGGCCCTCGCTGGTCACTGTCATTGGTTCTCTGT  300

seq1  ATGGCTGTGGGCCAGAAGCTCATTGAGGCCAGACACTATACCTGCCTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGTGGGCCAGAAGCTCATTGAGGCCAGACACTATACCTGCCTTGC  350

seq1  CTCAGTTTCCCTGACAACCCAGCCCAGGTCATGGTACATACTATCGGCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTTCCCTGACAACCCAGCCCAGGTCATGGTACATACTATCGGCGT  400

seq1  ATCTGAGGACAGTCACTCTGTTTGTGCCGGAGTCTCAACATAAAGGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGGACAGTCACTCTGTTTGTGCCGGAGTCTCAACATAAAGGCTCC  450

seq1  TCCGGGCTACTAGTCCCTAGCTGCACTCAGCCTAGAGGCTGAGGGACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGCTACTAGTCCCTAGCTGCACTCAGCCTAGAGGCTGAGGGACATG  500

seq1  GTGACAATCTGCTCACCCTGCTCCCGAATCCCCACAGTCACCCTCATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAATCTGCTCACCCTGCTCCCGAATCCCCACAGTCACCCTCATTTG  550

seq1  TTTTTACACTCTGTCCCTTTCACTTCTGTAAGGCAGGGTGCAGGAAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACACTCTGTCCCTTTCACTTCTGTAAGGCAGGGTGCAGGAAGAGG  600

seq1  GTCGCAGGGGTGGAACTCTGGAGTGACAGTGGGGTGGAATGGGACTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCAGGGGTGGAACTCTGGAGTGACAGTGGGGTGGAATGGGACTTGCT  650

seq1  TGTTTTTTGAGACAGGGTCTCAGGTAGCCCGTTAGCTCACTCTGCTGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTGAGACAGGGTCTCAGGTAGCCCGTTAGCTCACTCTGCTGCCA  700

seq1  AAG-ATAATCTTAAACCTCTGGCACTCCTGTCTGCACCTCTCATGTGGCT  749
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAATCTTAAACCTCTGGCACTCCTGTCTGCACCTCTCATGTGGCT  750

seq1  CTGGGCTGGGAGCAGGGCACCCTGCACATTAAGTGAGCATGCCCAGTTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTGGGAGCAGGGCACCCTGCACATTAAGTGAGCATGCCCAGTTGA  800

seq1  GCCACTACAACCCTTCAACCCGTTCTTGCCGGTTCCCATTTGTCAGTGTT  849
      |||||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  GCCACTACAA-CCTTCAACCCGTTCTTGCCGGTTCCCATTTGTCAGTG-T  848

seq1  TCCAAACACTGCCATGCCTTGGTTTACTCTGTCCTGTGTTTCCTCCAGCA  899
      | |||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  TGCAAACACTGCCATGCCTT-GTTTACTCTGT-CTGTGTTTCCTCCAGCA  896

seq1  GCGC  903
      ||||
seq2  GCGC  900