BAC Information

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BAC

Clone NameB6Ng01-300D11
Chromosome4 (Build37)
Map Location 66,809,639 - 66,810,752
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300D11.bB6Ng01-300D11.g
ACCGA094848GA094849
length1,2351,114
definitionB6Ng01-300D11.b B6Ng01-300D11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtttgcatgaatcttaatgagtaattttgcatcgatattcata
atagagattggtctgaagttctcagttttgattgagtccttgtgtggttt
aggtatcagagtaattgtggcttcacagaatgaattaggtaatatttctt
ctgtttctgttttatagaatagttttagaaatattggtatcaggtcttct
ttgaaggtctggtagaattctgcactaggattctggccctgggctttttt
atggttgggaggttcttaatgatttattctatttccttatgcaatatggg
tcttttaagatagtttatctgctctttatttaacttttatatatggtatc
tgtttagaaaaccatccatttcatctagattttccagttatgttgagttt
atgtttttgtagtttgatctgacaattttttgaatttcctgtttctgctg
ttgtgtctgttatcatctctgattttgttaatttggatacttcctctggg
ccatttagttagtttggttaggggtttatctatcttgttgattctctcaa
agaaacattatttgtttttttttgttttgttttgttttgttttgttttta
ttgtttgtattgttctctttgtttctatttggttgatttcggcctgaagt
ttgactatttctgcagtctactcctcttgagtgagtctgcttttttcttc
tagaactctcaggtgtgctgttaagttgctaatgtaagatctctccagtt
tctttaccagggaaccacacataaaaatagtgggacacttcaacacccca
ctctcaccaatggacaggtcattgaaacagaaaataaacagtcacagtga
aactaatagacattatgaaccaagtggatataacagatatctacagaaca
ttttacactaaaacaaaagaatataacttattttcatcaccatatggtac
cttctccaaaattgaccatataattgctcacaaaacaactctcaatcata
cagattgaaatattcccatgcatcctatcaaatcaccatgggcggagggc
tactcttcataacagcacatcacagaaagccacaataacatgtggaaatt
gaacactctctactcatgaataacttggtcaggaggaataagaataacta
ccaatatttctgaacttatggaaatgtatctcgtacgacttatggaacaa
atagaaagccggtgcctctgggagaggaaccattc

gaattcattagaatatctctctggggatgagtgacaactcctggagtcat
gactgcagactggaggtgaatgctttagccctctgaatgtggaaggggca
tcccctgggtcgctgagggatttgcaggttgcaggtggcactaatttcac
atgaaagcaatgtgtttgccaaaggaaagacagatggtaccagtcactag
ttatttatttctataattaatagcatgctgtgattcaggtcttgaagaaa
gtcccacttcctatggaattccttccatcgccagatgaaaaatggaaatt
ggaagccaagaagaggttttgaggttttctggcaggatgactcttcagat
ataaaggcttgtagcttttacgggaggaagtacacaacctagagaaatga
tctttattaaccagggtactgagtttttaaatccaggtacattatcactg
tgttttaaccaaacgttatcatatttatgtttcatgtatgtcatctaaga
gagataagtgcctcaggaaataatttttgaacatggaaatcatgaattgg
ttttggctaaatacataattataacctgtggaacacactgaggttataac
agatatcagaatttaaatatttagactaataataatgggtataaactaag
gaaacccactaattagccaattaaagaagttgaattaactttttgatcct
atgttctctgaaaagagaagtaactgatatccacatagcagagtttttgt
aagaattgaaaaaggatagaaataagaatatcctgacaggaccctgatat
agcagtctcctgtgaggctatgccagtgcctggcaaatacagaagtggat
gctcacaatcatctattggatggagcacagggacccgatgaaaggagcca
gagaaaggacccaggagcctgaaggggtctgcagccctaataggaggaac
aaaataatgaactaaatcagtactcccagagctccttggactaaacacct
aatcaagaaaacacatggtgggactcatgtctctagctgaattgtaacag
atgatggactagctggtcctatcaatggaaggaaggccttggcctgcgaa
gaattcatgcccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66809639_66810752
seq2: B6Ng01-300D11.g_65_1178

seq1  GAATTCATTAGAATATCTCTCTGGGGATGAGTGACAACTCCTGGAGTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGAATATCTCTCTGGGGATGAGTGACAACTCCTGGAGTCAT  50

seq1  GACTGCAGACTGGAGGTGAATGCTTTAGCCCTCTGAATGTGGAAGGGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAGACTGGAGGTGAATGCTTTAGCCCTCTGAATGTGGAAGGGGCA  100

seq1  TCCCCTGGGTCGCTGAGGGATTTGCAGGTTGCAGGTGGCACTAATTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGGGTCGCTGAGGGATTTGCAGGTTGCAGGTGGCACTAATTTCAC  150

seq1  ATGAAAGCAATGTGTTTGCCAAAGGAAAGACAGATGGTACCAGTCACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGCAATGTGTTTGCCAAAGGAAAGACAGATGGTACCAGTCACTAG  200

seq1  TTATTTATTTCTATAATTAATAGCATGCTGTGATTCAGGTCTTGAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTCTATAATTAATAGCATGCTGTGATTCAGGTCTTGAAGAAA  250

seq1  GTCCCACTTCCTATGGAATTCCTTCCATCGCCAGATGAAAAATGGAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACTTCCTATGGAATTCCTTCCATCGCCAGATGAAAAATGGAAATT  300

seq1  GGAAGCCAAGAAGAGGTTTTGAGGTTTTCTGGCAGGATGACTCTTCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCAAGAAGAGGTTTTGAGGTTTTCTGGCAGGATGACTCTTCAGAT  350

seq1  ATAAAGGCTTGTAGCTTTTACGGGAGGAAGTACACAACCTAGAGAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGCTTGTAGCTTTTACGGGAGGAAGTACACAACCTAGAGAAATGA  400

seq1  TCTTTATTAACCAGGGTACTGAGTTTTTAAATCCAGGTACATTATCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTAACCAGGGTACTGAGTTTTTAAATCCAGGTACATTATCACTG  450

seq1  TGTTTTAACCAAACGTTATCATATTTATGTTTCATGTATGTCATCTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAACCAAACGTTATCATATTTATGTTTCATGTATGTCATCTAAGA  500

seq1  GAGATAAGTGCCTCAGGAAATAATTTTTGAACATGGAAATCATGAATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAGTGCCTCAGGAAATAATTTTTGAACATGGAAATCATGAATTGG  550

seq1  TTTTGGCTAAATACATAATTATAACCTGTGGAACACACTGAGGTTATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCTAAATACATAATTATAACCTGTGGAACACACTGAGGTTATAAC  600

seq1  AGATATCAGAATTTAAATATTTAGACTAATAATAATGGGTATAAACTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCAGAATTTAAATATTTAGACTAATAATAATGGGTATAAACTAAG  650

seq1  GAAACCCACTAATTAGCCAATTAAAGAAGTTGAATTAACTTTTTGATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCACTAATTAGCCAATTAAAGAAGTTGAATTAACTTTTTGATCCT  700

seq1  ATGTTCTCTGAAAAGAGAAGTAACTGATATCCACATAGCAGAGTTTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTCTGAAAAGAGAAGTAACTGATATCCACATAGCAGAGTTTTTGT  750

seq1  AAGAATTGAAAAAGGATAGAAATAAGAATATCCTGACAGGACCCTGATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTGAAAAAGGATAGAAATAAGAATATCCTGACAGGACCCTGATAT  800

seq1  AGCAGTCTCCTGTGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCTCCTGTGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGAT  850

seq1  GCTCACAATCATCTATTGGATGGAGCACAGGGACCCGATG-AAGGAGCCA  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCTCACAATCATCTATTGGATGGAGCACAGGGACCCGATGAAAGGAGCCA  900

seq1  GAGAAAGGACCCAAGGAG-CTGAAGGGGTCTGCAGCCCT-ATAGGAGGAA  947
      |||||||||||| ||||| |||||||||||||||||||| ||||||||||
seq2  GAGAAAGGACCC-AGGAGCCTGAAGGGGTCTGCAGCCCTAATAGGAGGAA  949

seq1  CAAAAT-ATGAACT-AATCAGTACCCCCAGAGCTCCCTGGGACTAAACCA  995
      |||||| ||||||| ||||||||| ||||||||| ||| |||||||||  
seq2  CAAAATAATGAACTAAATCAGTACTCCCAGAGCT-CCTTGGACTAAACAC  998

seq1  CCAATCAAAGAAAACACATGGTGGGACTCATGTCTCTAGCTGAATATGTA  1045
      | |||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  CTAATC-AAGAAAACACATGGTGGGACTCATGTCTCTAGCTGAAT-TGTA  1046

seq1  ACAGATGATGTACTAGTTGG--CCATCAATGGGAGGAGAGGCCCTTGGTC  1093
      |||||||||| ||||| |||  | |||||||| |||| ||| |||||| |
seq2  ACAGATGATGGACTAGCTGGTCCTATCAATGGAAGGA-AGG-CCTTGG-C  1093

seq1  TTGCGAAGATTCTATGCCCCA  1114
       |||||||| |  ||||||||
seq2  CTGCGAAGAATTCATGCCCCA  1114


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