BAC Information

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BAC

Clone NameB6Ng01-300D17
Chromosome4 (Build37)
Map Location 146,553,701 - 146,626,160
singlet/doubletdoublet
Overlap geneOTTMUSG00000010657, LOC384087, LOC666546
Upstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570
Downstream geneLOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300D17.bB6Ng01-300D17.g
ACCGA094860GA094861
length1,1291,189
definitionB6Ng01-300D17.b B6Ng01-300D17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,625,010 - 146,626,160)(146,553,701 - 146,554,338)
sequence
gaattcatgtcatattctgaaacctaatcaagaacaggaagtatgttagg
tcatgagaactatgaggccgttttaagaaatggtatcatctaaaattatc
atagtcataattgtgttgtcttctctcagtaaaaggtagatgagttaatg
gactcagactcacagcataatttagacattgtaatgtatatatatgaggt
ctacatccaggaatatacgtttatgaacattttttgataaaaagaacaat
gccagtgttacatctagtttacagatagtaaagtgatggtgagtaaaact
gtgcttccaaattctacaactgtcatttttgctcagataggaaccctgta
tctctcttatctgaagttgggtgtcaacagctagtctaagatgctcagtt
tggattataagacctatatacaatagagcatcctttctagaagaaagaga
gttagaacaccaaatacaagaatgacttaaaagaaatacgtttctttcta
ttgtagcagttaggaagtgtaaagtcagtgtatacaaacaaaattacaaa
caagacatacaatcaaataccttgtgatatgattttataagaattttata
tgaagaagagttaaatgattatttaatgaagaattaatttgagaatattt
aatgataaaaataaaaagttagcaataggtagcattaatataatgtaatg
tttgtgactatatgacaaaatcaatacagataataatttcataaattaca
cagtggtttcccttcagaatgcttagacatacatgtataactaaatgaca
tatgtgaaaaaagtgataaagtaaaatgatttttataatggaaataacca
tattaagatgtataagaatcatactaacacttcattttttatggatacat
tattactcatgtgtctattactgccacaactaaaaatatgaaacttttga
cttcagcaatgttcttctctttattattgaggtcattgatctacatgatt
acagattacacaaaaaggatcatctaagtcttttactcattcctatcttt
ctttttttatttattttatgtttaatagtattttctatttacattcaatt
ttctaatttaaattcaatgctatgccaaa
gaattcatacaggagagaaaccttacaaatgcattgtatgtgagaaatgc
tttactgaaaaaggcaatctgagaattcatcagaggattcatacaggaga
taaaccttacaaatgcagtgaatgtgacaaatgctttacccaaaaatccc
atcttaatattcatcagagaattcatacaggagagaaaccttacaaatgt
agtcaatgtgacaaatcctttactgaaaatggccatctgagaattcatca
gagaaatcatacaggtgagaaaccttacaaatgtagtcgatgtgacaaat
cctttactgaaaatggccatctgagaattcatcagagaattcatacagga
gagaaaccttacaaatgcagtgaatgtgacaaatcctttactaaaaaatt
cagtttgaggattcatcagagaattcatacaggagagaaaccttacaaat
gcagtgaatgtgaaaaatgctttactttcaaaggcagtctgaggattcat
cagagaattcatacaggagagaaaccctacaaatgtagtgaatgtgacaa
atcctttactgaaaatggctgtttgagaattcatcagagaattcatacag
gagagaaaccttacaaatgcactgaatgtgacaaatgctttactttcaaa
ggcagtctgaggattcatcagagaattcatacaggagagaaaccttacaa
atgcactgaatgtgacaaatcctttactgaaaagggcaaactgagaattc
atcagagaattcatacaggagagaaaccttacaaatgtagtgaatgtgac
aaatgctttactgaaaaaggccatcagagaattcatacaggagagatacc
ttacaaatagtttgtatgtgacaaatacaatacaatgtcagtctgagaaa
tcatcagtttttaatacagtagagaatatttataaatgaagtgaatgaga
caatcctttaccaagatatatcatcttaaaaatcattagagaaatactta
cagaaagagaaacttttcattatatcgaagtatgatcctttactctggct
atttctagaatgttaacagtgaatactacaggatacaacctactcatgca
ttgatgaagaaatatctttgactcattcaagtcaagagaaatctatactt
ttaggcaaggtattttctgttgggggaaggtgtgtggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146625010_146626160
seq2: B6Ng01-300D17.b_44_1172 (reverse)

seq1  TTTGGCATAGCATTTGAAATTTAAATTAAGAAAATTTGAAATGTAAATTA  50
      ||||||||||||||   |||||||||| ||||||||   |||||||||  
seq2  TTTGGCATAGCATT--GAATTTAAATT-AGAAAATT--GAATGTAAAT--  43

seq1  AGAAAATACCTAATTTAAAACAATAAAATAAAATAAAAAAAGAAAAGAAT  100
      |||||||||    | | |||| ||||||| |||||||||||||||   ||
seq2  AGAAAATAC----TATTAAAC-ATAAAAT-AAATAAAAAAAGAAA--GAT  85

seq1  AGGAATGAAGTAAAAGAACCTTAGATGATTCCTTTTTTGTGTAATCTGTA  150
      ||||||| |||||||||  ||||||||||  | |||||||||||||||||
seq2  AGGAATG-AGTAAAAGA--CTTAGATGAT--CCTTTTTGTGTAATCTGTA  130

seq1  ATCATGTTAGATCAATGACCTCAAATAATAAAGAGAAGAACATTGCTGAA  200
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  ATCATG-TAGATCAATGACCTC-AATAATAAAGAGAAGAACATTGCTGAA  178

seq1  GTCAAAAGTTTCATATTTTTAGTTGTGGCAGTAATAGACACATGAGTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAGTTTCATATTTTTAGTTGTGGCAGTAATAGACACATGAGTAAT  228

seq1  AATGTATCCATAAAAAATGAAGTGTTAGTATGATTCTTATACATCTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCCATAAAAAATGAAGTGTTAGTATGATTCTTATACATCTTAAT  278

seq1  ATGGTTATTTCCATTATAAAAATCATTTTACTTTATCACTTTTTTCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTATTTCCATTATAAAAATCATTTTACTTTATCACTTTTTTCACAT  328

seq1  ATGTCATTTAGTTATACATGTATGTCTAAGCATTCTGAAGGGAAACCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTTAGTTATACATGTATGTCTAAGCATTCTGAAGGGAAACCACT  378

seq1  GTGTAATTTATGAAATTATTATCTGTATTGATTTTGTCATATAGTCACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATTTATGAAATTATTATCTGTATTGATTTTGTCATATAGTCACAA  428

seq1  ACATTACATTATATTAATGCTACCTATTGCTAACTTTTTATTTTTATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACATTATATTAATGCTACCTATTGCTAACTTTTTATTTTTATCAT  478

seq1  TAAATATTCTCAAATTAATTCTTCATTAAATAATCATTTAACTCTTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTCTCAAATTAATTCTTCATTAAATAATCATTTAACTCTTCTTC  528

seq1  ATATAAAATTCTTATAAAATCATATCACAAGGTATTTGATTGTATGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATTCTTATAAAATCATATCACAAGGTATTTGATTGTATGTCTT  578

seq1  ATTTGTAATTTTGTTTGTATACACTGACTTTACACTTCCTAACTGCTACA  650
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAATTTTGTTTGTATACACTGACTTTACACTTCCTAACTGCTACA  628

seq1  ATAGAAAGAAACGTATTTCTTTTAAGTCATTCTTGTATTTGGTGTTCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGAAACGTATTTCTTTTAAGTCATTCTTGTATTTGGTGTTCTAA  678

seq1  CTCTCTTTCTTCTAGAAAGGATGCTCTATTGTATATAGGTCTTATAATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTCTTCTAGAAAGGATGCTCTATTGTATATAGGTCTTATAATCC  728

seq1  AAACTGAGCATCTTAGACTAGCTGTTGACACCCAACTTCAGATAAGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGCATCTTAGACTAGCTGTTGACACCCAACTTCAGATAAGAGAG  778

seq1  ATACAGGGTTCCTATCTGAGCAAAAATGACAGTTGTAGAATTTGGAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGGTTCCTATCTGAGCAAAAATGACAGTTGTAGAATTTGGAAGCA  828

seq1  CAGTTTTACTCACCATCACTTTACTATCTGTAAACTAGATGTAACACTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTACTCACCATCACTTTACTATCTGTAAACTAGATGTAACACTGG  878

seq1  CATTGTTCTTTTTATCAAAAAATGTTCATAAACGTATATTCCTGGATGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCTTTTTATCAAAAAATGTTCATAAACGTATATTCCTGGATGTA  928

seq1  GACCTCATATATATACATTACAATGTCTAAATTATGCTGTGAGTCTGAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCATATATATACATTACAATGTCTAAATTATGCTGTGAGTCTGAGT  978

seq1  CCATTAACTCATCTACCTTTTACTGAGAGAAGACAACACAATTATGACTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAACTCATCTACCTTTTACTGAGAGAAGACAACACAATTATGACTA  1028

seq1  TGATAATTTTAGATGATACCATTTCTTAAAACGGCCTCATAGTTCTCATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATTTTAGATGATACCATTTCTTAAAACGGCCTCATAGTTCTCATG  1078

seq1  ACCTAACATACTTCCTGTTCTTGATTAGGTTTCAGAATATGACATGAATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACATACTTCCTGTTCTTGATTAGGTTTCAGAATATGACATGAATT  1128

seq1  C  1151
      |
seq2  C  1129

seq1: chr4_146553701_146554338
seq2: B6Ng01-300D17.g_629_1255

seq1  AAATGGCTGTTTGAGAATTCATCAGAGAATTCATACAGGAGAGAAACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTGTTTGAGAATTCATCAGAGAATTCATACAGGAGAGAAACCTT  50

seq1  ACAAATGCACTGAATGTGACAAATGCTTTACTTTCAAAGGCAGTCTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCACTGAATGTGACAAATGCTTTACTTTCAAAGGCAGTCTGAGG  100

seq1  ATTCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCACTGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCACTGAATG  150

seq1  TGACAAATCCTTTACTGAAAAGGGCAAACTGAGAATTCATCAGAGAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATCCTTTACTGAAAAGGGCAAACTGAGAATTCATCAGAGAATTC  200

seq1  ATAAAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACT  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACT  250

seq1  GAAAAAGGCCATCAGAGAATTCATACAGGAGAGATAGCTTACAAATAGTT  300
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAAAAAGGCCATCAGAGAATTCATACAGGAGAGATACCTTACAAATAGTT  300

seq1  TGTATGTGACAAATACAATACAATGTCAGTCTGAGAAATCATCAGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGACAAATACAATACAATGTCAGTCTGAGAAATCATCAGTTTTT  350

seq1  AATACAGTAGAGAATATTTATAAATGAAGTGAATGAGACAATCCTTTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGTAGAGAATATTTATAAATGAAGTGAATGAGACAATCCTTTACC  400

seq1  AAGATATATCATCTTAAAAATCATTAGAG-AATACTTACAG-AAGAGAAA  448
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  AAGATATATCATCTTAAAAATCATTAGAGAAATACTTACAGAAAGAGAAA  450

seq1  CTTTTCAATTATATCGAAGGTATGAATCCTTTACTCTTGGCCTATTTCCT  498
      |||||| ||||||||||| ||||| ||||||||||||  | |||||| ||
seq2  CTTTTC-ATTATATCGAA-GTATG-ATCCTTTACTCT--GGCTATTT-CT  494

seq1  AGAATGTTAACAGTGAATACTTACAGGATACAAACTTAACTCATGCATTG  548
      |||||||||||||||||||| |||||||||||| ||  ||||||||||||
seq2  AGAATGTTAACAGTGAATAC-TACAGGATACAACCT--ACTCATGCATTG  541

seq1  TATGAAGAAATATCTTTGACTTCATTTCAGGTCAAAGAGAATATCTAATA  598
       ||||||||||||||||||| ||| |||| ||| ||||||| |||| |||
seq2  -ATGAAGAAATATCTTTGAC-TCA-TTCAAGTC-AAGAGAA-ATCT-ATA  585

seq1  ACTTTTTAGGCAAAGTA-TTTCTGTTGGGGAAA---GTGTGGCC  638
         |||||||||| ||| |||||||||||| ||   ||||||||
seq2  --CTTTTAGGCAAGGTATTTTCTGTTGGGGGAAGGTGTGTGGCC  627