BAC Information

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BAC

Clone NameB6Ng01-300E15
Chromosome4 (Build37)
Map Location 143,731,821 - 143,919,555
singlet/doubletdoublet
Overlap geneOog3, Oog2, C87977, Pramel5, LOC666150
Upstream genePrdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144
Downstream geneLOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300E15.bB6Ng01-300E15.g
ACCGA094903GA094904
length1,1821,161
definitionB6Ng01-300E15.b B6Ng01-300E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,918,366 - 143,919,555)(143,731,821 - 143,732,981)
sequence
gaattcaccaccacatccagcttactttttattttcaaagttttagagcc
aggttcaaggagcctagctatgtcatactactttggagcacagagcacat
tggaagtgtgtagggggtcttgtctgtcttttagcagcttatttgtttct
attgagacagggtttcactatgtagccctggctagacttgaactcactct
taaagaccctagaattggacactagccaatatggtgccaccttattgctc
agcttgttctttattcaaacgtttgcctttcaaatactaaatggatgtcg
agcttgtcagcaaaaccagaaatttcaagactttagaggcagaggcagga
ggatgccatgtattctatctagtcttcactttgagtgtcaggtcagtcta
gttaaagagcttttgaaaacaacaaaaacaagcaagaatgatatggattg
atgagtctgtttctgatggaggttgttcggtgcagggtcttgatcctgac
ccatgctaggcaagtactcaaccagtgttgcattcaactcaattcttccc
tttcattttatatataaaggttaattatgtgccccagactatcctggaac
aggggataatatccctagggacaggatcctaagagtgtgtgagaagccca
cctgccaccattttgtctgttttagtagtgaacttgtcaattgaccaggc
tgaagcaactgcattcccatatcacagtcccccaaatcactgtgtcttgt
ggacccttctaacaaaactgttcccaggcttgtgtataggatattgccaa
aaataatttcaattagctggacagtggcggcacacacctttaatcccagc
ctttggaaagcagaagtagctggatctgtgagtttgaagccagcctgttg
gtctacagagttgagttccaggacagccagggctatacagagaaaccatg
tctcaaaaaacataatcatttcaattaaaccacaaaactgcaacccatga
aggatattcatgggattacaaatagctaacattacaacaagccataactg
aaatcctaacacagcagagaaacggggaaaaagctagaagaaccagatgt
ataaagaccagcaggctcgatgaattcttatcctcaaccctccactactg
aaccatgaaactaaatataggcttacagtcat
gaattctacgtaactaaggggtcatgtcctattatttggcaatgtacccg
gttcattctgaggttgttccaggaggcccttatctcaaaaatgttcttgg
aactgtctttagttgggagggttcgaactctagggtgaagattcaggaat
gcattctggggtgaagagttcaggagtgttctgggaacaatctctagatg
ggaggggtcgggctctggggtgaggaagagttcagtaatttctttattct
tcaatgtctttgaatgcaatgatctgcctgcctctcccaaattctgagat
taaaggcatggatcactcctgcctagctgtgccaccactacttggcctca
atggttttaatgccaaaattctcccctctaagatatgaaagctctccaaa
gccccctccttctcagagaccatatgcaatctaaccccagcttaggagaa
tatatctggttgggaaaagattaccaggaagctttaagtttcagctcatg
attccttgatgaatagcctgtgcgcaaatcaacaggatctttgtattaaa
aattatttgggattttttagaccatttttcatcattcaaatatgaaataa
gtgacatagcacttttatatttctaagaagccttaatagcactggagctg
ggcagataacaactctctatgctattttgactatgtccctgtaaatattc
tcacgagataacttgtcatggcctgtctgctctacttgtactttaacagg
ccaaccctcatgtcctcatgattcatttaccccatggtgtcttcttttct
ccatttctcctcattttctctcctcagaccccaagcctgggaaacaaagt
cccacacatctttgttctttccagctatttgctgtggggatctttattca
gcctatagtttttaaggagaaagcctataatattaaggagaaaggttata
tagcatcatttgtccttacatgaggatttcctcaatctgatgggcaacca
gagcttatgcatcaccataccacagcaacaggaacaaacctcatacagac
ctcagagaaataagaaattccaactttcctagccttccttgtctccaatc
catctggatgatcctggctagaacaactagggggagttttctgcctccaa
cctggtctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_143918366_143919555
seq2: B6Ng01-300E15.b_46_1227 (reverse)

seq1  ATGACTGGTAGGCTATAATTTTAGTTTTCATTTGTTCAGTAGTGTGAGGG  50
      |||||||  || |||||  ||||| ||||| | ||||||||||| |||||
seq2  ATGACTGTAAGCCTATA--TTTAG-TTTCA-TGGTTCAGTAGTG-GAGGG  45

seq1  TTTTGAGATAGGATTTCATCGAACCCTGGCTGGTC-TTATACATCTGG-T  98
      ||  | |||| || |||||||| ||   ||||||| |||||||||||| |
seq2  TTGAG-GATAAGAATTCATCGAGCC--TGCTGGTCTTTATACATCTGGTT  92

seq1  CTTCTAGCTTTTTCCCCGTTTCTCTGCTGTGTTAGGATTTCAGTTATGGC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTCTAGCTTTTTCCCCGTTTCTCTGCTGTGTTAGGATTTCAGTTATGG-  141

seq1  CTTGTTGTAATG-TAGCTTATTTGTAATCCCATGAATTATCCTTCATGGG  197
      |||||||||||| |||| |||||||||||||||||| |||||||||||||
seq2  CTTGTTGTAATGTTAGC-TATTTGTAATCCCATGAA-TATCCTTCATGGG  189

seq1  TTGCAGTTTTGTGGTTTAATTGAAATGATTATGTTTTTTGAGACATGGTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTTTGTGGTTTAATTGAAATGATTATGTTTTTTGAGACATGGTT  239

seq1  TCTCTGTATAGCCCTGGCTGTCCTGGAACTCAACTCTGTAGACCAACAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTATAGCCCTGGCTGTCCTGGAACTCAACTCTGTAGACCAACAGG  289

seq1  CTGGCTTCAAACTCACAGATCCAGCTACTTCTGCTTTCCAAAGGCTGGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCAAACTCACAGATCCAGCTACTTCTGCTTTCCAAAGGCTGGGA  339

seq1  TTAAAGGTGTGTGCCGCCACTGTCCAGCTAATTGAAATTATTTTTGGCAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTGTGTGCCGCCACTGTCCAGCTAATTGAAATTATTTTTGGCAA  389

seq1  TATCCTATACACAAGCCTGGGAACAGTTTTGTTAGAAGGGTCCACAAGAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTATACACAAGCCTGGGAACAGTTTTGTTAGAAGGGTCCACAAGAC  439

seq1  ACAGTGATTTGGGGGACTGTGATATGGGAATGCAGTTGCTTCAGCCTGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGATTTGGGGGACTGTGATATGGGAATGCAGTTGCTTCAGCCTGGT  489

seq1  CAATTGACAAGTTCACTACTAAAACAGACAAAATGGTGGCAGGTGGGCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGACAAGTTCACTACTAAAACAGACAAAATGGTGGCAGGTGGGCTT  539

seq1  CTCACACACTCTTAGGATCCTGTCCCTAGGGATATTATCCCCTGTTCCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACACTCTTAGGATCCTGTCCCTAGGGATATTATCCCCTGTTCCAG  589

seq1  GATAGTCTGGGGCACATAATTAACCTTTATATATAAAATGAAAGGGAAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCTGGGGCACATAATTAACCTTTATATATAAAATGAAAGGGAAGA  639

seq1  ATTGAGTTGAATGCAACACTGGTTGAGTACTTGCCTAGCATGGGTCAGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTTGAATGCAACACTGGTTGAGTACTTGCCTAGCATGGGTCAGGA  689

seq1  TCAAGACCCTGCACCGAACAACCTCCATCAGAAACAGACTCATCAATCCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACCCTGCACCGAACAACCTCCATCAGAAACAGACTCATCAATCCA  739

seq1  TATCATTCTTGCTTGTTTTTGTTGTTTTCAAAAGCTCTTTAACTAGACTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTCTTGCTTGTTTTTGTTGTTTTCAAAAGCTCTTTAACTAGACTG  789

seq1  ACCTGACACTCAAAGTGAAGACTAGATAGAATACATGGCATCCTCCTGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACACTCAAAGTGAAGACTAGATAGAATACATGGCATCCTCCTGCC  839

seq1  TCTGCCTCTAAAGTCTTGAAATTTCTGGTTTTGCTGACAAGCTCGACATC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTAAAGTCTTGAAATTTCTGGTTTTGCTGACAAGCTCGACATC  889

seq1  CATTTAGTATTTGAAAGGCAAACGTTTGAATAAAGAACAAGCTGAGCAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGTATTTGAAAGGCAAACGTTTGAATAAAGAACAAGCTGAGCAAT  939

seq1  AAGGTGGCACCATATTGGCTAGTGTCCAATTCTAGGGTCTTTAAGAGTGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGCACCATATTGGCTAGTGTCCAATTCTAGGGTCTTTAAGAGTGA  989

seq1  GTTCAAGTCTAGCCAGGGCTACATAGTGAAACCCTGTCTCAATAGAAACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGTCTAGCCAGGGCTACATAGTGAAACCCTGTCTCAATAGAAACA  1039

seq1  AATAAGCTGCTAAAAGACAGACAAGACCCCCTACACACTTCCAATGTGCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCTGCTAAAAGACAGACAAGACCCCCTACACACTTCCAATGTGCT  1089

seq1  CTGTGCTCCAAAGTAGTATGACATAGCTAGGCTCCTTGAACCTGGCTCTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCCAAAGTAGTATGACATAGCTAGGCTCCTTGAACCTGGCTCTA  1139

seq1  AAACTTTGAAAATAAAAAGTAAGCTGGATGTGGTGGTGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTGAAAATAAAAAGTAAGCTGGATGTGGTGGTGAATTC  1182

seq1: chr4_143731821_143732981
seq2: B6Ng01-300E15.g_66_1226

seq1  GAATTCTACGTAACTAAGGGGTCATGTCCTATTATTTGGCAATGTACCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACGTAACTAAGGGGTCATGTCCTATTATTTGGCAATGTACCCG  50

seq1  GTTCATTCTGAGGTTGTTCCAGGAGGCCCTTATCTCAAAAATGTTCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTCTGAGGTTGTTCCAGGAGGCCCTTATCTCAAAAATGTTCTTGG  100

seq1  AACTGTCTTTAGTTGGGAGGGTTCGAACTCTAGGGTGAAGATTCAGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCTTTAGTTGGGAGGGTTCGAACTCTAGGGTGAAGATTCAGGAAT  150

seq1  GCATTCTGGGGTGAAGAGTTCAGGAGTGTTCTGGGAACAATCTCTAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTGGGGTGAAGAGTTCAGGAGTGTTCTGGGAACAATCTCTAGATG  200

seq1  GGAGGGGTCGGGCTCTGGGGTGAGGAAGAGTTCAGTAATTTCTTTATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGTCGGGCTCTGGGGTGAGGAAGAGTTCAGTAATTTCTTTATTCT  250

seq1  TCAATGTCTTTGAATGCAATGATCTGCCTGCCTCTCCCAAATTCTGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTCTTTGAATGCAATGATCTGCCTGCCTCTCCCAAATTCTGAGAT  300

seq1  TAAAGGCATGGATCACTCCTGCCTAGCTGTGCCACCACTACTTGGCCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCATGGATCACTCCTGCCTAGCTGTGCCACCACTACTTGGCCTCA  350

seq1  ATGGTTTTAATGCCAAAATTCTCCCCTCTAAGATATGAAAGCTCTCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTAATGCCAAAATTCTCCCCTCTAAGATATGAAAGCTCTCCAAA  400

seq1  GCCCCCTCCTTCTCAGAGACCATATGCAATCTAACCCCAGCTTAGGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTCCTTCTCAGAGACCATATGCAATCTAACCCCAGCTTAGGAGAA  450

seq1  TATATCTGGTTGGGAAAAGATTACCAGGAAGCTTTAAGTTTCAGCTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGGTTGGGAAAAGATTACCAGGAAGCTTTAAGTTTCAGCTCATG  500

seq1  ATTCCTTGATGAATAGCCTGTGCGCAAATCAACAGGATCTTTGTATTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGATGAATAGCCTGTGCGCAAATCAACAGGATCTTTGTATTAAA  550

seq1  AATTATTTGGGATTTTTTAGACCATTTTTCATCATTCAAATATGAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTGGGATTTTTTAGACCATTTTTCATCATTCAAATATGAAATAA  600

seq1  GTGACATAGCACTTTTATATTTCTAAGAAGCCTTAATAGCACTGGAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATAGCACTTTTATATTTCTAAGAAGCCTTAATAGCACTGGAGCTG  650

seq1  GGCAGATAACAACTCTCTATGCTATTTTGACTATGTCCCTGTAAATATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATAACAACTCTCTATGCTATTTTGACTATGTCCCTGTAAATATTC  700

seq1  TCACGAGATAACTTGTCATGGCCTGTCTGCTCTACTTGTACTTTAACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAGATAACTTGTCATGGCCTGTCTGCTCTACTTGTACTTTAACAGG  750

seq1  CCAACCCTCATGTCCTCATGATTCATTTACCCCATGGTGTCTTCTTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCTCATGTCCTCATGATTCATTTACCCCATGGTGTCTTCTTTTCT  800

seq1  CCATTTCTCCTCATTTTCTCTCCTCAGACCCCAAGCCTGGGAAACAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTCCTCATTTTCTCTCCTCAGACCCCAAGCCTGGGAAACAAAGT  850

seq1  CCCACACATCTTTGTTCTTTCCAGCTATTTGCTGTGGGGATCTTTATTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACATCTTTGTTCTTTCCAGCTATTTGCTGTGGGGATCTTTATTCA  900

seq1  GCCTATAGTTTTTAAGGAGAAAGCCTATAATATTAAGGAGAAAGGTTATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATAGTTTTTAAGGAGAAAGCCTATAATATTAAGGAGAAAGGTTATA  950

seq1  TAGCATCATTTGT-CTTACATGAGGATTTCCTCAATCTGATGGGCAACCA  999
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAGCATCATTTGTCCTTACATGAGGATTTCCTCAATCTGATGGGCAACCA  1000

seq1  GAGCTTTATGCATCACAATA-CACAGCAACA-GAACAAACCTCAATACAG  1047
      |||| ||||||||||| ||| |||||||||| ||||||||||| ||||| 
seq2  GAGC-TTATGCATCACCATACCACAGCAACAGGAACAAACCTC-ATACA-  1047

seq1  GACCTCAGAGAAATAAAGAAATTCCAAC-TTCCTAGCCTTTCCTTGGTCT  1096
      |||||||||||||| ||||||||||||| ||||||||| |||||| ||||
seq2  GACCTCAGAGAAAT-AAGAAATTCCAACTTTCCTAGCC-TTCCTT-GTCT  1094

seq1  CC-ATTCATCTGGATGATTCTTGGCTAGAACAACTA-GGGGAG-TTTCTG  1143
      || || ||||||||||| || ||||||||||||||| |||||| ||||||
seq2  CCAATCCATCTGGATGA-TCCTGGCTAGAACAACTAGGGGGAGTTTTCTG  1143

seq1  CTCCAAACTTTGTCTCTG  1161
      |  | ||| | |||||||
seq2  CCTCCAACCTGGTCTCTG  1161