BAC Information

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BAC

Clone NameB6Ng01-300O05
Chromosome4 (Build37)
Map Location 147,049,291 - 147,071,377
singlet/doubletdoublet
Overlap geneLOC100043100
Upstream geneMGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618
Downstream geneLOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300O05.bB6Ng01-300O05.g
ACCGA095345GA095346
length1,0671,120
definitionB6Ng01-300O05.b B6Ng01-300O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,049,291 - 147,050,188)(147,070,455 - 147,071,377)
sequence
gaattctctgatgaatactaagattggattgttgggtaaagcatttgtca
cattcactgcatttgtaaggtttctctcctgtatgaattctctgatgaat
actaagatgggattgttgggtaaagcatttgtcacattcactgcatttgt
aaggtttctctcctgtatgaattctctgatgaattctcagactgcttttt
tcagtaaagcatttgccacattcactgcatttgtaaggtttctctcctgt
atgaattctctgatgaatactaagataggattcttgggtaaagcatttgt
cacattcactgcatttgtaaggtttctctcctgtatgaattctctgatga
atactaagattggattgtttggtaaagcatttgtcacattcactgcattt
gtaaggtttctctcctgtatgaattctctgatgcatagtaagattgaatt
tgtttttaaaacatttgtcacattcactacatttgtaaattttctcttct
gtatgaatttcctgatgaatactaagatggatctgatgggtaaagcattt
gtcacttttactacttttgtaaggtttctttccatgataaattctctgct
gactttgtaggttttctctctgggtaagatatttgtgaaattcactacat
ttgtaagggttccctgcaatattgtcttttttcaccatgactttatgttt
agaaacaaaaatcttgtctaattctgcatttcggttgtgttttttcttct
gcatgttaattccttgattgagactaatggtagaaaacaaacttaaactg
tttacagagtcattgtatttgcaaacttctttagtgttcctgggcttaag
tcttttttggttcgagaattgaagagcatcagagctgtgattagttttgt
aaggtgtacactggagggattcagaatgacattgctaagcttgtcccatt
tagaagacttctcttgatattcatgtgttcatggacatgtactggctgtt
ctggatcataccttcccattcttttccacgtatgcaatgattttctgaaa
aaaaggggggcattaga
gaattcttctaatcctcccaggttcagcccagcatgctgtgagaggaaga
atctaggccaagctagttttataaatagaaaacttactatggattaggac
aaaattagacagcacctttgaaataattatgattgctcactttctttaga
aaaatgactccttgtttcatgaaaagcactttgccaatgcacagtcatgc
tttgttgagtgctgtactgtggacgtcttgcaggtgtggaaatgcttaga
ccctgcattcagggcttttttttttttttaatttattttatgtaagtaca
ctgtagctgtcgtcagacactccagaagagggcatcagatttcgttatgg
atggttgtgagccaccatgtggttgctgggatttgaactcaggacctttg
gaagagcagtcggcgctcttaaccactgagccatctcaccagccctcagg
gcttttttcagcgatctcttgttggagaagttcaacagtttgtatcctgc
gtgtcacaatagttttcttacattcttccttgttcctcagtgtttctggg
aaaaggactctgtgtattagctgtgtgactgactctaggataaactgaaa
tcctcagggaaaaagagacattctcatgacatcttctctttccttcatgt
ttatcctttcacctggtgttggcatctttcatttttgtcacatgaaaagg
tccaggttctttttgaacgatattttcccattttcaggtcttcattttct
cagccaaatctgcataaatataaatcaattctaagagccctagatggtaa
aggccaaggagactctatcgaaaggatccaggtgtgttagaggctttgaa
caaggggtggggtggggctcacctgccagtacaaagaggacatgaatttg
gttttgccagcttctgtttcattaatgattctgaaagattcacctagaat
aattagatgtgatgatatggattcccatggtaggcatgctgtcagctgtc
acttcatgtcatatttattattgatgctgagaagtgctggtgccaatgga
aatcaagttccttttaccagacttgaattcagcatcagtttatgtgtttg
aagggctttacacatgaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147049291_147050188
seq2: B6Ng01-300O05.b_222_1113

seq1  CTGATGAATTCTCAGACTGCTTTTTTCAGTAAAGCATTTGCCACATTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAATTCTCAGACTGCTTTTTTCAGTAAAGCATTTGCCACATTCAC  50

seq1  TGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATTCTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  TGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATACTAAGA  100

seq1  CTGCTTTTTTCAGTAAAGCATTTGCCACATTCACTGCATTTGTAAGGTTT  150
        |  || ||  |||||||||||| |||||||||||||||||||||||||
seq2  TAGGATTCTTGGGTAAAGCATTTGTCACATTCACTGCATTTGTAAGGTTT  150

seq1  CTCTCCTGTATGAATTCTCTGATGAATTCTCAGACTGGTTTTATCAGTAA  200
      ||||||||||||||||||||||||||| || ||| ||| ||  |  ||||
seq2  CTCTCCTGTATGAATTCTCTGATGAATACTAAGATTGGATTGTTTGGTAA  200

seq1  AGCATTTGCCACATTCACTGCATTTGTAAGGTTTCTCTCCTTTATGAATT  250
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  AGCATTTGTCACATTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATT  250

seq1  CTCTGATGCATAGTAAGATTGAATTTGTTTTTAAAACATTTGTCACATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGCATAGTAAGATTGAATTTGTTTTTAAAACATTTGTCACATTC  300

seq1  ACTACATTTGTAAATTTTCTCTTCTGTATGAATTCCCTGATGAATACTAA  350
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACTACATTTGTAAATTTTCTCTTCTGTATGAATTTCCTGATGAATACTAA  350

seq1  GATGGATCTGATGGGTAAAGCATTTGTCACTTTTACTACTTTCGTAAGGT  400
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GATGGATCTGATGGGTAAAGCATTTGTCACTTTTACTACTTTTGTAAGGT  400

seq1  TTCTTTCCATGATAAATTCTCTGCTGACTTTGTAGTTTTTCTCTCTGGGT  450
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCTTTCCATGATAAATTCTCTGCTGACTTTGTAGGTTTTCTCTCTGGGT  450

seq1  AAGATATTTGTGAAATTCACTACATTTGTAAGGGTTCCCTGCAATATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTTGTGAAATTCACTACATTTGTAAGGGTTCCCTGCAATATTGT  500

seq1  CTTTTTTCACCATGACTTTATGTTTAGAAACAAAAATCTTGTCTAATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCACCATGACTTTATGTTTAGAAACAAAAATCTTGTCTAATTCT  550

seq1  GCATTTCGGTTGTGTTTTTTCTTCTGCATGTTAATTCCTTGATTGAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCGGTTGTGTTTTTTCTTCTGCATGTTAATTCCTTGATTGAGACT  600

seq1  AATGGTAGAAAACAAACTTAAACTGTTTACAGAGTCATTGTATTTGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGAAAACAAACTTAAACTGTTTACAGAGTCATTGTATTTGCAAA  650

seq1  CTTCTTTAGTGTTCCTGGGCTTAAGTCTTTTTTGGGTCGAGAATTGAAGA  700
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTTCTTTAGTGTTCCTGGGCTTAAGTCTTTTTTGGTTCGAGAATTGAAGA  700

seq1  GCATCAGAGCTGTGATTAGTTTTGTAAGGTGTACACTGGAGGGATTCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCATCAGAGCTGTGATTAGTTTTGTAAGGTGTACACTGGAGGGATTC-AG  749

seq1  AATGACATTGCTAAGCTTGTCCCATTTAGAAGACTTCTCTTGAATATTCA  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AATGACATTGCTAAGCTTGTCCCATTTAGAAGACTTCTCTTG-ATATTCA  798

seq1  TGTGTTCATGGACAATGTACTGGCTG-TCTTGATCCAATACCTTCCCATT  849
      ||||||||||||| |||||||||||| ||| ||||  |||||||||||||
seq2  TGTGTTCATGGAC-ATGTACTGGCTGTTCTGGATC--ATACCTTCCCATT  845

seq1  C-TTTCCACGTATGCAATGATTTTCTGAAAAAAAAGGGGGGGCAATTAGA  898
      | ||||||||||||||||||||||||||||||||  ||||||| ||||||
seq2  CTTTTCCACGTATGCAATGATTTTCTGAAAAAAA--GGGGGGC-ATTAGA  892

seq1: chr4_147070455_147071377
seq2: B6Ng01-300O05.g_87_1187 (reverse)

seq1  GCTTCATGTGTAAATGTCCCTTTTCAAACACATTAACTGATGCTGATTTC  50
      ||||||||||||||   |||  ||||||||||| |||||||||||| |||
seq2  GCTTCATGTGTAAA--GCCC--TTCAAACACATAAACTGATGCTGAATTC  46

seq1  -AGTCTGGGTAAAAGAAACTTTGATTTCAATGGGCAACAGCAATTTCCCA  99
       ||||| |||||||| ||| |||||||| || |||| |||| | ||| ||
seq2  AAGTCT-GGTAAAAGGAAC-TTGATTTCCATTGGCACCAGC-ACTTCTCA  93

seq1  GCATCAAAATTAATTAAATATTGACATGAAGTGACAGCTGACAGCACTGC  149
      |||||||   ||| |||||| ||||||||||||||||||||||||| |||
seq2  GCATCAA---TAA-TAAATA-TGACATGAAGTGACAGCTGACAGCA-TGC  137

seq1  CTAACATGGGAAATCCATATCATCATGTCTAA-TATTCTTAGTGAAATCT  198
      ||| |||||| ||||||||||||||  ||||| ||||||  ||| |||||
seq2  CTACCATGGG-AATCCATATCATCACATCTAATTATTCTAGGTG-AATCT  185

seq1  TTCAGAATCATTAATGAAATAGAAGCTGGCAAAACC-AATTCATGTCCTC  247
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  TTCAGAATCATTAATGAAACAGAAGCTGGCAAAACCAAATTCATGTCCTC  235

seq1  TTTGTACTGGCAGGTGAGCCCCACCCCACCCCTTGTTCAAAGCCTCTAAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACTGGCAGGTGAGCCCCACCCCACCCCTTGTTCAAAGCCTCTAAC  285

seq1  ACACTTGGATGC-TTCAATAGAGTCTCTTTGGCCTTTACCATATTAGGGC  346
      |||| ||||| | ||| |||||||||| ||||||||||||||  ||||||
seq2  ACACCTGGATCCTTTCGATAGAGTCTCCTTGGCCTTTACCAT-CTAGGGC  334

seq1  TCTTAGATTTGATTTCTATTTATGCAGATTTGGCTGAGAAAATGGAGACC  396
      ||||||| ||||||| |||||||||||||||||||||||||||| |||||
seq2  TCTTAGAATTGATTTATATTTATGCAGATTTGGCTGAGAAAATGAAGACC  384

seq1  CGAAAATGGGAAAATATCATTCAAACAGAACCTGGAACTTTTCATGTGAC  446
       ||||||||||||||||| |||||| |||||||||| |||||||||||||
seq2  TGAAAATGGGAAAATATCGTTCAAAAAGAACCTGGACCTTTTCATGTGAC  434

seq1  AAAAATGAAAGACACCAACACCAGGCAAAAGGATAAACATGAAGGAAAGA  496
      ||||||||||||  |||||||||||  |||||||||||||||||||||||
seq2  AAAAATGAAAGATGCCAACACCAGGTGAAAGGATAAACATGAAGGAAAGA  484

seq1  GAAGATATCATGAGAATGTCTCTTTTTCCCTGAGGATTTCAGTTTACCCT  546
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  GAAGATGTCATGAGAATGTCTCTTTTTCCCTGAGGATTTCAGTTTATCCT  534

seq1  AGAGACAGTCACACA--TTTTACACAGAGTCCTTTTCCCAGAAACACTGA  594
      |||| ||||||||||  |  ||||||||||||||||||||||||||||||
seq2  AGAGTCAGTCACACAGCTAATACACAGAGTCCTTTTCCCAGAAACACTGA  584

seq1  GG---AAGGAAGAATGTAAGAAAACTATTGTGACACGCAGGATCCAAACC  641
      ||   |||||||||||||||||||||||||||||||||||||| ||||| 
seq2  GGAACAAGGAAGAATGTAAGAAAACTATTGTGACACGCAGGATACAAACT  634

seq1  ATTGAACTTCTTCAACAAGAGATCACTG----------------------  669
       |||||||||| |||||||||||| |||                      
seq2  GTTGAACTTCTCCAACAAGAGATCGCTGAAAAAAGCCCTGAGGGCTGGTG  684

seq1  --------------------------------------------------  669
                                                        
seq2  AGATGGCTCAGTGGTTAAGAGCGCCGACTGCTCTTCCAAAGGTCCTGAGT  734

seq1  --------------------------------------------------  669
                                                        
seq2  TCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACGAAATCT  784

seq1  --------------------------------------------------  669
                                                        
seq2  GATGCCCTCTTCTGGAGTGTCTGACGACAGCTACAGTGTACTTACATAAA  834

seq1  -------------AAAAAAAAGCCGTGAACGCAGGGTCTAAGCATTACCA  706
                   ||||||||||| |||| |||||||||||||||| |||
seq2  ATAAATTAAAAAAAAAAAAAAGCCCTGAATGCAGGGTCTAAGCATTTCCA  884

seq1  CACCTGCAAGAAGTCCAGAGTGCCGCACTCAACAAACCATGAATGTGTAT  756
      ||||||||||| ||||| ||| | |||||||||||| ||||| |||| ||
seq2  CACCTGCAAGACGTCCACAGTACAGCACTCAACAAAGCATGACTGTGCAT  934

seq1  GGGCAAAGTGCTTTTCATGAAACAAGGAGTCATTTTTCTTAAGAAAGTGA  806
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGGCAAAGTGCTTTTCATGAAACAAGGAGTCATTTTTCTAAAGAAAGTGA  984

seq1  GCAATCATAATTATTTCAAAGGTACTGTCTATTTATGTCCTAATCCATAG  856
      ||||||||||||||||||||||| ||||||| || |||||||||||||||
seq2  GCAATCATAATTATTTCAAAGGTGCTGTCTAATTTTGTCCTAATCCATAG  1034

seq1  TAAGTTTTCTATTTATAAAAATAGCTTGGCCTAGATTCTTCCTCTCACAG  906
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAAGTTTTCTATTTATAAAACTAGCTTGGCCTAGATTCTTCCTCTCACAG  1084

seq1  CATGCAGGGCTGAACCT  923
      ||||| |||||||||||
seq2  CATGCTGGGCTGAACCT  1101