BAC Information

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BAC

Clone NameB6Ng01-301C06
Chromosome4 (Build37)
Map Location 20,715,022 - 20,716,097
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800, E130310K16Rik
Downstream genePrdm13, Ccnc, 2610029I01Rik, Usp45
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301C06.bB6Ng01-301C06.g
ACCGA095531GA095532
length1,084301
definitionB6Ng01-301C06.b B6Ng01-301C06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaaagaatcctgctatcttctgacataatatggcagccctttt
aattattgttctgtgtttaaaatgaagattattgctgttcatttacaaat
aaaagaaatttagtcttccaacctggatggatataagtttctccgtgttc
ttccaattaacccgccaccacctcgtttttttcccgagacaaagttaaac
aaatttcacccttacgtagcttctgtaatccaagaaggaaacagcacaat
actttttttcttgtcactcatcataccataactcataggagctagcatga
gtcaggtactttttttttctttctttttctttctttctttcttttttttt
tttttttttttttttttttttgagtcagggtttctctgtatagctctgac
tgtcctggaactcactctgtagaccaggctggcctcgaactcaaaaatct
gcctgcctctgcctcctgagtgctgggattaaaggcgtgtgccaggttct
ttattatccacacatatgataatattcagttattatgtagacacagaaag
cagatgtcactagattatttgtttgtgatcatgttagcagagtgaaatga
gggatgaggaaaatcatgtgaagtgtctaatacaattttttatctcataa
taaattttgtgtcttgtcttttgtaaacaaatattactttagcatcgtag
gacaagaaattctcatcaattggtaatatatattacaacaatttagacat
atggaataataattgtgcttccacactgaactatggcactcattttatat
ggactaaatagttatctatcttattatttagttatattatctcattagta
gagagatttaactttttatgaaacccattttaattcttctaataaactaa
taatttgggggtgggagggggtatgaccactggttgttctttttacagga
actgggacttggtttctcaggactcatgatagatggctccacagtgattt
gtatcttacagttcagggactaaagcctcttctggcctctgttgccactg
cattacatggcacaatatatcatgcagttaaaac

acagagatagaggaagcatgcacagtgtccgcatgggtctgatccaggct
ctttgaattgttgcttccagtttactgtttttatgggaattccaagtgtg
aattagtaagtctctgtttttatactttcttttgggttcttttctttttt
ctgtttgtttttatcccaattctgatgtgttaatttttgttttatcatat
tatattttatcttatgttttactttattattatccattaaaatctgtttt
tctttctggtgaagacagatagtagatatggatgggaggagagagggggg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_20715022_20716097
seq2: B6Ng01-301C06.b_50_1133 (reverse)

seq1  GTTTTACCTGCATG-TATA-TGTGCCATGTATGTGCAGTGGCAACAGAGG  48
      |||||| ||||||| |||| |||||||||||  |||||||||||||||||
seq2  GTTTTAACTGCATGATATATTGTGCCATGTA-ATGCAGTGGCAACAGAGG  49

seq1  CCAGAAGAGGGCTTTAGTCCCCTGGAACTGT-AGATACAAATCACTGT-G  96
      |||||||| ||||||||||||   ||||||| |||||||||||||||| |
seq2  CCAGAAGA-GGCTTTAGTCCC--TGAACTGTAAGATACAAATCACTGTGG  96

seq1  AGCCATCTATCATGAGTCCTGAG-AACCAAGT-CCAGTTCCTGT-AAAAG  143
      ||||||||||||||||||||||| |||||||| ||||||||||| |||||
seq2  AGCCATCTATCATGAGTCCTGAGAAACCAAGTCCCAGTTCCTGTAAAAAG  146

seq1  AACAACCAGTGGTCATACCCC--TCCACCCCAAATTTATTAGTTTATTAG  191
      |||||||||||||||||||||   ||||||| || |||||||||||||||
seq2  AACAACCAGTGGTCATACCCCCTCCCACCCCCAAATTATTAGTTTATTAG  196

seq1  -AGAATTAAAATGGGTTTCAT-AAGAGTTAAATCTCTCTACTAATGAGAT  239
       |||||||||||||||||||| || |||||||||||||||||||||||||
seq2  AAGAATTAAAATGGGTTTCATAAAAAGTTAAATCTCTCTACTAATGAGAT  246

seq1  AATATAACTAAATAATAAGATAGATAACTATTTAGTCCATAT-AAATGAG  288
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AATATAACTAAATAATAAGATAGATAACTATTTAGTCCATATAAAATGAG  296

seq1  TGCCATAGTTCAGTGTGGAAGCACAATTATTATTCCATATGTCTAAATTG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAGTTCAGTGTGGAAGCACAATTATTATTCCATATGTCTAAATTG  346

seq1  TTGTAATATATATTACCAATTGATGAGAATTTCTTGTCCTACGATGCTAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATATATATTACCAATTGATGAGAATTTCTTGTCCTACGATGCTAA  396

seq1  AGTAATATTTGTTTACAAAAGACAAGACACAAAATTTATTATGAGATAAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATATTTGTTTACAAAAGACAAGACACAAAATTTATTATGAGATAAA  446

seq1  AAATTGTATTAGACACTTCACATGATTTTCCTCATCCCTCATTTCACTCT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTATTAGACACTTCACATGATTTTCCTCATCCCTCATTTCACTCT  496

seq1  GCTAACATGATCACAAACAAATAATCTAGTGACATCTGCTTTCTGTGTCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACATGATCACAAACAAATAATCTAGTGACATCTGCTTTCTGTGTCT  546

seq1  ACATAATAACTGAATATTATCATATGTGTGGATAATAAAGAACCTGGCAC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATAACTGAATATTATCATATGTGTGGATAATAAAGAACCTGGCAC  596

seq1  ACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCAGATTTCTGAGT  638
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCAGATTTTTGAGT  646

seq1  TCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGTCAGAGCTATA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGTCAGAGCTATA  696

seq1  CAGAGAAACCCTGACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCTGACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA  746

seq1  AGAAAGAAAGAAAAAGAAAGAAAAAAAAAGTACCTGACTCATGCTAGCTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAAAGAAAGAAAAAAAAAGTACCTGACTCATGCTAGCTC  796

seq1  CTATGAGTTATGGTATGATGAGTGACAAGAAAAAAAGTATTGTGCTGTTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGTTATGGTATGATGAGTGACAAGAAAAAAAGTATTGTGCTGTTT  846

seq1  CCTTCTTGGATTACAGAAGCTACGTAAGGGTGAAATTTGTTTAACTTTGT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTGGATTACAGAAGCTACGTAAGGGTGAAATTTGTTTAACTTTGT  896

seq1  CTCGGGAAAAAAACGAGGTGGTGGCGGGTTAATTGGAAGAACACGGAGAA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGAAAAAAACGAGGTGGTGGCGGGTTAATTGGAAGAACACGGAGAA  946

seq1  ACTTATATCCATCCAGGTTGGAAGACTAAATTTCTTTTATTTGTAAATGA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATATCCATCCAGGTTGGAAGACTAAATTTCTTTTATTTGTAAATGA  996

seq1  ACAGCAATAATCTTCATTTTAAACACAGAACAATAATTAAAAGGGCTGCC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATAATCTTCATTTTAAACACAGAACAATAATTAAAAGGGCTGCC  1046

seq1  ATATTATGTCAGAAGATAGCAGGATTCTTTGAGAATTC  1076
      ||||||||||||||||||||||||||||||||||||||
seq2  ATATTATGTCAGAAGATAGCAGGATTCTTTGAGAATTC  1084


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