BAC Information

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BAC

Clone NameB6Ng01-301I23
Chromosome4 (Build37)
Map Location 58,170,209 - 58,258,296
singlet/doubletdoublet
Overlap geneSvep1
Upstream genePtpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513, Akap2, D630039A03Rik, Txn1, Txndc8
Downstream geneMusk, Edg2, LOC675306, LOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301I23.bB6Ng01-301I23.g
ACCGA095840GA095841
length1,1511,191
definitionB6Ng01-301I23.b B6Ng01-301I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,257,145 - 58,258,296)(58,170,209 - 58,171,379)
sequence
gaattctggggagcagacactagccaggaatgttgagaacttgttacaag
ttctggggaggaagtttcatccatgtctaagtactcacaaggtctactgt
gagacccttgctctgcaggatatcacctagaacactaagcaaacttgcat
attcacaaatgataggccatgtgtgaagaaataaatactgcttatagact
agaagtcacaaaattagtaagccataaggttcaatcctaaaaagtataga
aagtggtaagctgaggtaaagctagacctcttgtgaaaaggccccagagt
aactattcaggagtgtagtagcattagtgtccccgccccctcccccccat
gctcccagcattcacaatttttacaataacagtaagtttctggattagtt
tctataatggtggcttgccagttacactctggttacatttgaatttctgg
ccctcggagaggacatgggatctggagtgactgtggagggttcctcgtac
cttgccaaaatactggtgccctccttgggtcttgcaaggtccagtgagcc
cttggaggaatcttgagccatgtggccaatggcgaacagaagctttctct
tgtccgtgggatacagcagcctgattgcccctacagtagatgacctttca
cttgaggcctgcaatcctctattcctgtccccatgaccacatttttgtaa
gccaagaatcatcatcttcaaggtcaccaggaaggagatagagatggatg
attggcaagactcaaaagaacctcttcagctcaattagttgaaggtttat
ggtgacttgtttgaccagaaacctgtaaaacctaaccttaggtagttagt
tatcctggctcatgaacttcttgtgtcaaaacttcaagtctggttttttt
ggatttgtttgtttgtttgttgtctgttgtttccatgtctattgtgtcca
aactcagtgtgtagccacagatgatcttgaacttcggatcctccttgact
ccataccccatttgctgggattatagcctgcgtaccaggttgcccttatt
cttgtggttcttggaatcaagccagagacctcatgatgtaaggaaggcac
cccacccaactcagatcctgggaacttatggaggtgtcatcagcttccat
g
gaattctttgcccatgaggataatattctaaattttatatggaaagacaa
agaagctagactagctacaatggttgtgataaaacagaatgggcacagtc
agtttcaagaattaccacacagctctagggactgacacagtctatctgat
agaacagaaagcatcggagaaatggacagtaatgcacccaacaagtacaa
aatgagttcagtgagggaggcatcgcctttacgggaaatggtgtagagga
actggctatacccaggcgaactaatcaatcagccataaatctcacacgat
aaaaataaaatgtgacgcatgtgtcagtataaatgcaaggctaaggttca
gactgtagaaggcaaaagcataaagcacagatggaaatgttgcagatgca
cttcttcaagttcaacggcattcataaccatgcaaagacagagtcccgca
cctgagagagtgacactagattcctatctctcaccttacacaagaccaac
tccaaacagacatggtatattaatgtaagacatgaggaagagccagggga
aaactctttcagagacagttgtaagcaagggcttcagaaggaggactgga
gcaacagcagcaaaacctcccagggctgacaaatgcagagagtttcaacg
ctccttcatcgcaaaggggaaatcaaggatcactgacagatgtacagagg
ccaaggaatggacatccagaatccataaggaacctcaccaccaccaccac
caaattagacatcccaaatgccattcgatcaacaaaaggactaattagtt
gaatagaaagaaaggatacaaatggaccataataattaaaaaatcgttca
acatccttaggcaaccaggggaaatgttaattaaactcacagagatccta
caggacatctatcatcaagataacagtgaatgttgggcagaggtgtggag
ggataaaagaactccttaaaacactgctgggtaggaatttaaactgggga
ataatcaataggggagggtctcaaaaaagctaaaggataggagccatgac
cagctgtgcatactgatttatttgttacccagagggaagcaatgtcgcaa
accaacgggagaatattgcaaggtctacactgtaatcaggtactctattc
cgaatgccaaggtttatatccggggaagggaaagacatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_58257145_58258296
seq2: B6Ng01-301I23.b_45_1195 (reverse)

seq1  CATGGAAGCTGATGACAACCTCAATAAAGGTCCAGGGATCTGAGTTGGGT  50
      |||||||||||||||| ||||| || ||| |||  |||||||||||||||
seq2  CATGGAAGCTGATGAC-ACCTCCAT-AAGTTCCCAGGATCTGAGTTGGGT  48

seq1  -GGGTGCTTTCCTAACATCATGA-GTCTCTTGGCTTGATCCCAAGAACCA  98
       |||||| ||||| ||||||||| ||||| ||||||||| ||||||||||
seq2  GGGGTGCCTTCCTTACATCATGAGGTCTC-TGGCTTGATTCCAAGAACCA  97

seq1  C-AGAATAAGGGC-ACCTTGTACGCA-GCTATAATCCCAGCAAATGGGGT  145
      | ||||||||||| |||| ||||||| |||||||||||||||||||||||
seq2  CAAGAATAAGGGCAACCTGGTACGCAGGCTATAATCCCAGCAAATGGGGT  147

seq1  ATGGAGTC-AGGAGGATCCGAAGTTCAAGATCATCCTGT-GCTACACACT  193
      |||||||| ||||||||||||||||||||||||| |||| ||||||||||
seq2  ATGGAGTCAAGGAGGATCCGAAGTTCAAGATCAT-CTGTGGCTACACACT  196

seq1  GAGTTTGGACACATTAGACATTGAAAACAAACAAGACAACAAACAAACAA  243
      ||||||||||||| |||||| || ||||||   |||||||||||||||||
seq2  GAGTTTGGACACAATAGACA-TGGAAACAA--CAGACAACAAACAAACAA  243

seq1  ACAAAATCCAAAAAAACCAGACTTGAAGTTTTGACACAAGAAGTTCATGA  293
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AC-AAATCCAAAAAAACCAGACTTGAAGTTTTGACACAAGAAGTTCATGA  292

seq1  GCCAGGATAACTAACTACCTAAGGTTAGGTTTTACAGGTTTCTGGTCAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGATAACTAACTACCTAAGGTTAGGTTTTACAGGTTTCTGGTCAAA  342

seq1  CAAGTCACCATAAACCTTCAACTAATTGAGCTGAAGAGGTTCTTTTGAGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCACCATAAACCTTCAACTAATTGAGCTGAAGAGGTTCTTTTGAGT  392

seq1  CTTGCCAATCATCCATCTCTATCTCCTTCCTGGTGACCTTGAAGATGATG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAATCATCCATCTCTATCTCCTTCCTGGTGACCTTGAAGATGATG  442

seq1  ATTCTTGGCTTACAAAAATGTGGTCATGGGGACAGGAATAGAGGATTGCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGCTTACAAAAATGTGGTCATGGGGACAGGAATAGAGGATTGCA  492

seq1  GGCCTCAAGTGAAAGGTCATCTACTGTAGGGGCAATCAGGCTGCTGTATC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAAGTGAAAGGTCATCTACTGTAGGGGCAATCAGGCTGCTGTATC  542

seq1  CCACGGACAAGAGAAAGCTTCTGTTCGCCATTGGCCACATGGCTCAAGAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGACAAGAGAAAGCTTCTGTTCGCCATTGGCCACATGGCTCAAGAT  592

seq1  TCCTCCAAGGGCTCACTGGACCTTGCAAGACCCAAGGAGGGCACCAGTAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAAGGGCTCACTGGACCTTGCAAGACCCAAGGAGGGCACCAGTAT  642

seq1  TTTGGCAAGGTACGAGGAACCCTCCACAGTCACTCCAGATCCCATGTCCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAAGGTACGAGGAACCCTCCACAGTCACTCCAGATCCCATGTCCT  692

seq1  CTCCGAGGGCCAGAAATTCAAATGTAACCAGAGTGTAACTGGCAAGCCAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGAGGGCCAGAAATTCAAATGTAACCAGAGTGTAACTGGCAAGCCAC  742

seq1  CATTATAGAAACTAATCCAGAAACTTACTGTTATTGTAAAAATTGTGAAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAGAAACTAATCCAGAAACTTACTGTTATTGTAAAAATTGTGAAT  792

seq1  GCTGGGAGCATGGGGGGGAGGGGGCGGGGACACTAATGCTACTACACTCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGCATGGGGGGGAGGGGGCGGGGACACTAATGCTACTACACTCC  842

seq1  TGAATAGTTACTCTGGGGCCTTTTCACAAGAGGTCTAGCTTTACCTCAGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGTTACTCTGGGGCCTTTTCACAAGAGGTCTAGCTTTACCTCAGC  892

seq1  TTACCACTTTCTATACTTTTTAGGATTGAACCTTATGGCTTACTAATTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACTTTCTATACTTTTTAGGATTGAACCTTATGGCTTACTAATTTT  942

seq1  GTGACTTCTAGTCTATAAGCAGTATTTATTTCTTCACACATGGCCTATCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTCTAGTCTATAAGCAGTATTTATTTCTTCACACATGGCCTATCA  992

seq1  TTTGTGAATATGCAAGTTTGCTTAGTGTTCTAGGTGATATCCTGCAGAGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAATATGCAAGTTTGCTTAGTGTTCTAGGTGATATCCTGCAGAGC  1042

seq1  AAGGGTCTCACAGTAGACCTTGTGAGTACTTAGACATGGATGAAACTTCC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCTCACAGTAGACCTTGTGAGTACTTAGACATGGATGAAACTTCC  1092

seq1  TCCCCAGAACTTGTAACAAGTTCTCAACATTCCTGGCTAGTGTCTGCTCC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGAACTTGTAACAAGTTCTCAACATTCCTGGCTAGTGTCTGCTCC  1142

seq1  CCAGAATTC  1152
      |||||||||
seq2  CCAGAATTC  1151

seq1: chr4_58170209_58171379
seq2: B6Ng01-301I23.g_67_1257

seq1  GAATTCTTTGCCCATGAGGATAATATTCTAAATTTTATATGGAAAGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCCCATGAGGATAATATTCTAAATTTTATATGGAAAGACAA  50

seq1  AGAAGCTAGACTAGCTACAATGGTTGTGATAAAACAGAATGGGCACAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTAGACTAGCTACAATGGTTGTGATAAAACAGAATGGGCACAGTC  100

seq1  AGTTTCAAGAATTACCACACAGCTCTAGGGACTGACACAGTCTATCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAAGAATTACCACACAGCTCTAGGGACTGACACAGTCTATCTGAT  150

seq1  AGAACAGAAAGCATCGGAGAAATGGACAGTAATGCACCCAACAAGTACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGAAAGCATCGGAGAAATGGACAGTAATGCACCCAACAAGTACAA  200

seq1  AATGAGTTCAGTGAGGGAGGCATCGCCTTTACGGGAAATGGTGTAGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTTCAGTGAGGGAGGCATCGCCTTTACGGGAAATGGTGTAGAGGA  250

seq1  ACTGGCTATACCCAGGCGAACTAATCAATCAGCCATAAATCTCACACGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTATACCCAGGCGAACTAATCAATCAGCCATAAATCTCACACGAT  300

seq1  AAAAATAAAATGTGACGCATGTGTCAGTATAAATGCAAGGCTAAGGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAATGTGACGCATGTGTCAGTATAAATGCAAGGCTAAGGTTCA  350

seq1  GACTGTAGAAGGCAAAAGCATAAAGCACAGATGGAAATGTTGCAGATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTAGAAGGCAAAAGCATAAAGCACAGATGGAAATGTTGCAGATGCA  400

seq1  CTTCTTCAAGTTCAACGGCATTCATAACCATGCAAAGACAGAGTCCCGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCAAGTTCAACGGCATTCATAACCATGCAAAGACAGAGTCCCGCA  450

seq1  CCTGAGAGAGTGACACTAGATTCCTATCTCTCACCTTACACAAGACCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGAGTGACACTAGATTCCTATCTCTCACCTTACACAAGACCAAC  500

seq1  TCCAAACAGACATGGTATATTAATGTAAGACATGAGGAAGAGCCAGGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACAGACATGGTATATTAATGTAAGACATGAGGAAGAGCCAGGGGA  550

seq1  AAACTCTTTCAGAGACAGTTGTAAGCAAGGGCTTCAGAAGGAGGACTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTTCAGAGACAGTTGTAAGCAAGGGCTTCAGAAGGAGGACTGGA  600

seq1  GCAACAGCAGCAAAACCTCCCAGGGCTGACAAATGCAGAGAGTTTCAACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGCAGCAAAACCTCCCAGGGCTGACAAATGCAGAGAGTTTCAACG  650

seq1  CTCCTTCATCGCAAAGGGGAAATCAAGGATCACTGACAGATGTACAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCATCGCAAAGGGGAAATCAAGGATCACTGACAGATGTACAGAGG  700

seq1  CCAAGGAATGGACATCCAGAATCCATAAGGAACCTCACCACCACCACCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAATGGACATCCAGAATCCATAAGGAACCTCACCACCACCACCAC  750

seq1  CAAATTAGACATCCCAAATGCCATTCGATCAACAAAAGGACTAATTAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAGACATCCCAAATGCCATTCGATCAACAAAAGGACTAATTAGTT  800

seq1  GAATAGAAAG-AAGGATACAAATGGACCATAAATAATTAAAAAATCGTTC  849
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  GAATAGAAAGAAAGGATACAAATGGACCAT-AATAATTAAAAAATCGTTC  849

seq1  AACATCCTTA-GCAACCA-GGGAAATGTTAATTAAACTCACAGAGATCCT  897
      |||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  AACATCCTTAGGCAACCAGGGGAAATGTTAATTAAACTCACAGAGATCCT  899

seq1  ACAGGACATCTATCATCAAGATAACAGTGAATGTTGGCAAGA-GTGT-GA  945
      |||||||||||||||||||||||||||||||||||||  ||| |||| ||
seq2  ACAGGACATCTATCATCAAGATAACAGTGAATGTTGGGCAGAGGTGTGGA  949

seq1  GGGAT-AAAGAACTC--TTACACACTGCT-GGTAGGAATTTAAACTGGG-  990
      ||||| |||||||||  | | |||||||| ||||||||||||||||||| 
seq2  GGGATAAAAGAACTCCTTAAAACACTGCTGGGTAGGAATTTAAACTGGGG  999

seq1  -ATAATCAATAGGGAGGGTTCTC-AAAAAGCTAAA-GATA-GAGCCATGA  1036
       |||||||||||||  || |||| ||||||||||| |||| |||||||||
seq2  AATAATCAATAGGGGAGGGTCTCAAAAAAGCTAAAGGATAGGAGCCATGA  1049

seq1  CCCAGCTGTGCCATTACTGA-TTATT--GTACCCAGA-GGAAGCCATGTC  1082
       ||||||||||   |||||| |||||   |||||||| |||||| |||| 
seq2  -CCAGCTGTGC--ATACTGATTTATTTGTTACCCAGAGGGAAGCAATGT-  1095

seq1  CGCAAACCA--CGGAG-ATATTTGCAGGTCTACACTG--ATCA-GTACTC  1126
      |||||||||   |||| |||||   ||||||||||||  |||| ||||||
seq2  CGCAAACCAACGGGAGAATATTGCAAGGTCTACACTGTAATCAGGTACTC  1145

seq1  TATTCCGAATAGCCAAG--TTATAATC-GGGAAGAGAAAGAAAATTTG  1171
      |||||||||| ||||||  |||||  | |||||| ||||| | |||||
seq2  TATTCCGAAT-GCCAAGGTTTATATCCGGGGAAGGGAAAG-ACATTTG  1191