BAC Information

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BAC

Clone NameB6Ng01-301M22
Chromosome3 (Build37)4 (Build37)
Map Location 71,324,456 - 71,325,21163,446,005 - 63,446,161
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC670542, EG625901, EG667377
Downstream geneLOC667385, LOC100041459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301M22.bB6Ng01-301M22.g
ACCGA096025GA096026
length1,001854
definitionB6Ng01-301M22.b B6Ng01-301M22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,324,456 - 71,325,211)(63,446,005 - 63,446,161)
sequence
gaattctttgtttagcactgtaccccatttttaatagagttatttgattc
tctggagtctaacttcttgagttctttgtatgtattggatattagtcatc
tataggatgtaggatgggtaaatatcttccctaatcttttgcttgctgtt
ttgtcttattgacagtgtcctttgccttacagaagttttgctgatttatg
aggtaccatttgttatggttggtttgtttgttttgtttttattttttatt
tttttcaatttttattagatattttcttgatttatatttccaatgctatt
cccaaagtttcctataccctacccccagtcctgctcccctacccacccac
tcccaattcttggccctagcgggctcctgtactggggaatagaaagtttt
taagaccaagggacctctcttcccaatgatggctaactaggccatcttct
gctacatttgcaactagagacatgagccctgggggtactggttagttcat
attgttgttccacctatagggtttcagacctcttcagcttctttgatatt
ttctctagcttctccattgggggccctgtgttccatccaaaagatgactg
agagcatccacttctgtatgcactggcatagcctcacaagagacagctat
atcagagtcctttcagcaaaatctttctggcatgtacaatagagtctgca
tttgttgaatgattatgggatggatccctgggtgaggtagtctctggatg
ctccatcctttcatcttagctccaaactttgtctctgtaatttcttccag
gggcattttgttccctattctaaggaggaatgaagtatccacacttttgt
cttccttcttcttgattttcttgtgttttgcaatttgtatcttggggtaa
tctaggtttctaggctaatatccacttatcaatgagtgtatatcaagtga
cttccttgtgattagtactgcactcaagatgataacctcagaatccatcc
a
gaattctgttcttgtggctgtctttttttaggtttgttgaaggattactt
tctttcttttcctagtatgtggtttccatccttgtaatttttttcttgtt
attatcctttgaggagctggattcgtggaaagataatatgtgaatttgtt
ttttttttttttttttgtgtgtgtgtgtgtggaatactttggtttctcca
tctatggtaattgaaagtttggctaggtatagtatcctggtttggcattt
gtgttctcttagtgtctgtataacatctttccaggatcttctctctttca
tagtctctggtgaaaaatgtggtgtaattctgataggcctgcctttatat
gtttcttgacctttttcctttactgcttttaatattctatctttatttag
tgcatttgttgttctgattattatgtgttgggaggaatttcctcttctgg
tccagtttatttggatctctgtaggcctcttgtatgttcatcagcatctc
tctctttaggtttgggaagttttcttctataattttgttgaagacatttg
ctggccctttaagttgaaaatcttcattctcatctactcctattatctgt
aggtttggtcttctcattttgtcctggattgcatgaatgttttgagttag
gatctttttgcatttcgcattttcttcgattgttttgctgatgttctcta
tggaatcttctgcacctttgattctctcttccatctcttgtatttctgtt
gttgatgctggcatgtatgggtcccagatttatttcctagggtttctatt
ttctagcgttgactcactttgtttttgttgttgtgttttttttttttttt
ttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_71324456_71325211
seq2: B6Ng01-301M22.b_47_802

seq1  GAATTCTTTGTTTAGCACTGTACCCCATTTTTAATAGAGTTATTTGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCACTGTACCCCATTTTTAATAGAGTTATTTGATTC  50

seq1  TCTGGAGTCTAACTTCTTGAGTTCTTTGTATGTATTGGATATTAGTCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTCTAACTTCTTGAGTTCTTTGTATGTATTGGATATTAGTCATC  100

seq1  TATAGGATGTAGGATGGGTAAATATCTTCCCTAATCTTTTGCTTGCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGATGTAGGATGGGTAAATATCTTCCCTAATCTTTTGCTTGCTGTT  150

seq1  TTGTCTTATTGACAGTGTCCTTTGCCTTACAGAAGTTTTGCTGATTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTATTGACAGTGTCCTTTGCCTTACAGAAGTTTTGCTGATTTATG  200

seq1  AGGTACCATTTGTTATGGTTGGTTTGTTTGTTTTGTTTTTATTTTTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACCATTTGTTATGGTTGGTTTGTTTGTTTTGTTTTTATTTTTTATT  250

seq1  TTTTTCAATTTTTATTAGATATTTTCTTGATTTATATTTCCAATGCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAATTTTTATTAGATATTTTCTTGATTTATATTTCCAATGCTATT  300

seq1  CCCAAAGTTTCCTATACCCTACCCCCAGTCCTGCTCCCCTACCCACCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGTTTCCTATACCCTACCCCCAGTCCTGCTCCCCTACCCACCCAC  350

seq1  TCCCAATTCTTGGCCCTAGCGGGCTCCTGTACTGGGGAATAGAAAGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATTCTTGGCCCTAGCGGGCTCCTGTACTGGGGAATAGAAAGTTTT  400

seq1  TAAGACCAAGGGACCTCTCTTCCCAATGATGGCTAACTAGGCCATCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCAAGGGACCTCTCTTCCCAATGATGGCTAACTAGGCCATCTTCT  450

seq1  GCTACATTTGCAACTAGAGACATGAGCCCTGGGGGTACTGGTTAGTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATTTGCAACTAGAGACATGAGCCCTGGGGGTACTGGTTAGTTCAT  500

seq1  ATTGTTGTTCCACCTATAGGGTTTCAGACCTCTTCAGCTTCTTTGATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGTTCCACCTATAGGGTTTCAGACCTCTTCAGCTTCTTTGATATT  550

seq1  TTCTCTAGCTTCTCCATTGGGGGCCCTGTGTTCCATCCAAAAGATGACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGCTTCTCCATTGGGGGCCCTGTGTTCCATCCAAAAGATGACTG  600

seq1  AGAGCATCCACTTCTGTATGCACTGGCATAGCCTCACAAGAGACAGCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATCCACTTCTGTATGCACTGGCATAGCCTCACAAGAGACAGCTAT  650

seq1  ATCAGAGTCCTTTCAGCAAAATCTTTCTGGCATGTACAATAGAGTCTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGTCCTTTCAGCAAAATCTTTCTGGCATGTACAATAGAGTCTGCA  700

seq1  TTTGTTGAATGATTATGGGATGGATCCCTGGGTGAGGTAGTCTCTGGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAATGATTATGGGATGGATCCCTGGGTGAGGTAGTCTCTGGATG  750

seq1  CTCCAT  756
      ||||||
seq2  CTCCAT  756

seq1: chr4_63446005_63446161
seq2: B6Ng01-301M22.g_884_920 (reverse)

seq1  TTAAAAAAAAAAATGGTGTGATCCAGGCATGGTAGTGCACACCTTTAATC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCAGCCCTTGAGAGGCAGATCCGGATCTACAAAGTGAGTTCCAGGACAGC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAGGGCTACAGAGAAACCCTGTCTTGAAAAACAAAAAACA---ACAACAA  147
                             || ||||| |||||| |   |||||||
seq2  -----------------------TTAAAAAAAAAAAAAAAAACACAACAA  27

seq1  CAAAAACAAA  157
      ||||||||||
seq2  CAAAAACAAA  37