BAC Information

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BAC

Clone NameB6Ng01-302A19
Chromosome4 (Build37)
Map Location 146,252,728 - 146,363,734
singlet/doubletdoublet
Overlap geneLOC626288, LOC666498
Upstream geneLOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514
Downstream geneLOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302A19.bB6Ng01-302A19.g
ACCGA096207GA096208
length1,0501,093
definitionB6Ng01-302A19.b B6Ng01-302A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,252,728 - 146,253,783)(146,362,639 - 146,363,734)
sequence
gaattcaactttggactcacacttaattaaatgctctgaggaaaaggctt
ttatttctttccttaactcaactcagatgcattattaaccaccagtatgt
ttaatctactcacatatgaagaatcaattaacttgtgacctttttttttt
tttttttttgcataagtacaatatgggaaaaactaaaagtcaccacaatg
ggaaactagtagccctgccatctgaaaggtgttcatgggctttgaaccct
gttctttaaagtcagacccccaggtttgggcttgtgcttctgagctctcg
cctccatgctgagctagaatccattttaacctctcataatcatcacaaca
ggttttgaacctaagaggtcacatgagaatcctggaactcattacaatca
tgaaaagagttgacttcctagcaatagtctaatgagacttgggtaaatct
cgagtcttctttccccagcttatactgatatgcatgggtgtcatagagtg
tttcagtgaacaatcaggaaactatttatcaacaaacagtgcagtgtgta
ttgtaattttgttctagtttttctttctttccttcttacttttttttctt
cttcttcttttttttttttttcacttttttgacaaaaatctagacagttt
tccaaaggagtttctcttaattgcctcacccttcaagcagtaaataatat
tgtgccttgacttaatatcattttaattcaccattttctttgactgaggt
acccacctcctctaccttttctttaagtctgataatctgtctcccacagt
ttctctatgtttttgtttttgttttttttaacctcactacattttctttt
caagtggttttttttttggtttttttgttttttggtttgttttgtttttt
ggcattcctgagcacctattgaactcaatttaatattttatagtgtcctc
aagcatctggtattatttttctgttcatggtcatttgtctgtctggagtg
gattcacatgggtttacaaccttaatgtcctggatgtgtgtttcattctt

gaattctcagactggttctatcagtaaagcatttgccacattcactgcat
ttgtaaggtttctctcctgtatgaattctctgatgcatagtaagattgaa
tttgtttttaaaacatttgtcacattcactacatttgtaaattttctctt
ctgtatgaattccctgatgaatactaagatggatctgatgggtaaagcat
ttgtcacttttactacttttgtaaggtttctttccatgataaattctctg
ctgactttgtagtttttctctctgggtaagatatttgtgaaattcactac
atttgtaagggttccctgcaatattgtcttttttcaccatgactttatgt
ttagaaacaaaaatcttgtctaattctgcatttcggttgtgttttttctt
ctgcatgttaattccttgattgagactaatggtagaaaacaaacttaaac
tgtttacagagtcattgtatttgcaaacttctttagtgttcctgggctta
agtcttttttgggtcgagaattgaagagcatcagagctgtgattagtttt
gtaaggtgtacactggagggattcaagaatgacattgctaaacttgtccc
atttagaagacttctcttgaatattcatgtgttcatggacaatgtactgg
ctgtcttgatccaataccttcccattctttccacgtatgcaatgattttc
tgaaaaaaaagggggggcaattagaggtgacatgaattacttatataagg
agtaagggactcaataatcagtgagcttatggattcgtactctcaagaaa
ggtttctctctctctctctctctctctctctctctctctctctgtgaatc
attacatgtatcctcagaagaacctcaaatatgatctatatcaaatgact
gggaaatgatattacccctgctaaatgttattttcaaattagacatcata
ccaccttcaaatataataacccagatttgcttccaaaagaagtgacatga
tgtgttacttcacctgataagttggatattagcccaagaaacttaagatt
acccaggattatattcataccatttttgtgaaacacatgacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146252728_146253783
seq2: B6Ng01-302A19.b_44_1093

seq1  GAATTCAACTTTGGACTCACACTTAATTAAATGCTCTGAGGAAAAGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTTGGACTCACACTTAATTAAATGCTCTGAGGAAAAGGCTT  50

seq1  TTATTTCTTTCCTTAACTCAACTCAGATGCATTATTAACCACCAGTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTTTCCTTAACTCAACTCAGATGCATTATTAACCACCAGTATGT  100

seq1  TTAATCTACTCACATATGAAGAATCAATTAACTTGTGACCTTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTACTCACATATGAAGAATCAATTAACTTGTGACCTTTTTTTTTT  150

seq1  TTTTTTTTTGCATAAGTACAATATGGGAAAAACTAAAAGTCACCACAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGCATAAGTACAATATGGGAAAAACTAAAAGTCACCACAATG  200

seq1  GGAAACTAGTAGCCCTGCCATCTGAAAGGTGTTCATGGGCTTTGAACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTAGTAGCCCTGCCATCTGAAAGGTGTTCATGGGCTTTGAACCCT  250

seq1  GTTCTTTAAAGTCAGACCCCCAGGTTTGGGCTTGTGCTTCTGAGCTCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTAAAGTCAGACCCCCAGGTTTGGGCTTGTGCTTCTGAGCTCTCG  300

seq1  CCTCCATGCTGAGCTAGAATCCATTTTAACCTCTCATAATCATCACAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGCTGAGCTAGAATCCATTTTAACCTCTCATAATCATCACAACA  350

seq1  GGTTTTGAACCTAAGAGGTCACATGAGAATCCTGGAACTCATTACAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGAACCTAAGAGGTCACATGAGAATCCTGGAACTCATTACAATCA  400

seq1  TGAAAAGAGTTGACTTCCTAGCAATAGTCTAATGAGACTTGGGTAAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAGTTGACTTCCTAGCAATAGTCTAATGAGACTTGGGTAAATCT  450

seq1  CGAGTCTTCTTTCCCCAGCTTATACTGATATGCATGGGTGTCATAGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCTTCTTTCCCCAGCTTATACTGATATGCATGGGTGTCATAGAGTG  500

seq1  TTTCAGTGAACAATCAGGAAACTATTTATCAACAAACAGTGCAGTGTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGAACAATCAGGAAACTATTTATCAACAAACAGTGCAGTGTGTA  550

seq1  TTGTAATTTTGTTCTAGTTTTTCTTTCTTTCCTTCTTACTTTTTTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTTTGTTCTAGTTTTTCTTTCTTTCCTTCTTACTTTTTTTTCTT  600

seq1  CTTCTTCTTTTTTTTTTTTTTCACTTTTTTGACAAAAATCTAGACAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTTTTTTTTTTTTTCACTTTTTTGACAAAAATCTAGACAGTTT  650

seq1  TCCAAAGGAGTTTCTCTTAATTGCCTCACCCTTCAAGCAGTAAATAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGGAGTTTCTCTTAATTGCCTCACCCTTCAAGCAGTAAATAATAT  700

seq1  TGTGCCTTGACTTAATATCATTTTAATTCACCATTTTCTTTGACTGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTTGACTTAATATCATTTTAATTCACCATTTTCTTTGACTGAGGT  750

seq1  ACCCACCTCCTCTACCTTTTCTTTAAGTCTGATAATCTGTCTCCCACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCTCCTCTACCTTTTCTTTAAGTCTGATAATCTGTCTCCCACAGT  800

seq1  TTCTCTATGTTTTTGTTTTTGTTTTTTTTAACCTCACTACATTTTCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATGTTTTTGTTTTTGTTTTTTTTAACCTCACTACATTTTCTTTT  850

seq1  CAGGTGGTTTTTTTTTT-GTTTTTTTGTTTTTTGGTTTTGTTTTGTTTTT  899
      || |||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  CAAGTGGTTTTTTTTTTGGTTTTTTTGTTTTTTGG-TTTGTTTTGTTTTT  899

seq1  TGGCATTCCTGAGCACCTATTGAACTCAATTTTAATATTTTATAGTGTCC  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGCATTCCTGAGCACCTATTGAACTCAA-TTTAATATTTTATAGTGTCC  948

seq1  TCAGGCATCTGGTATTATTTTCTTGTTCATGGTTCATTTTGTTCCTGTCT  999
      ||| |||||||||||||||||  ||||||||| ||| |||||  ||||||
seq2  TCAAGCATCTGGTATTATTTTTCTGTTCATGG-TCA-TTTGT--CTGTCT  994

seq1  -GAGTGGATTCACAT-GGTTTACAAACTTTAATGTCCCTGATGTGTGTTT  1047
       |||||||||||||| ||||||| ||| |||||||||  |||||||||||
seq2  GGAGTGGATTCACATGGGTTTAC-AACCTTAATGTCCTGGATGTGTGTTT  1043

seq1  TCTATTCTT  1056
         ||||||
seq2  --CATTCTT  1050

seq1: chr4_146362639_146363734
seq2: B6Ng01-302A19.g_66_1158 (reverse)

seq1  GTGTCATGTGTTTCAC--AAATTGTATG-ATAT-ATCTTGGGTATTC-TA  45
      ||||||||||||||||  |||| ||||| |||| ||| |||||| || ||
seq2  GTGTCATGTGTTTCACAAAAATGGTATGAATATAATCCTGGGTAATCTTA  50

seq1  AGTTTC-TGGGCTAATATCC-ACTTATCA-GTG-AGT-ACATATCATGTC  90
      |||||| ||||||||||||| |||||||| ||| ||| ||| ||||||||
seq2  AGTTTCTTGGGCTAATATCCAACTTATCAGGTGAAGTAACACATCATGTC  100

seq1  ACTTCTTTTGG-AGCAATTCTGGGTTATTATATTTG-AGGTGGTATGATG  138
      ||||||||||| ||||| |||||||||||||||||| |||||||||||||
seq2  ACTTCTTTTGGAAGCAAATCTGGGTTATTATATTTGAAGGTGGTATGATG  150

seq1  TCTAATTTGAAAATAACATTTAGCA-GGGTATTATCATTT-CCAGTCATT  186
      ||||||||||||||||||||||||| ||||| |||||||| |||||||||
seq2  TCTAATTTGAAAATAACATTTAGCAGGGGTAATATCATTTCCCAGTCATT  200

seq1  TGATATAGATCATATTTGAGGTTCTTCTGAGGATACATGTAATGATTCAC  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAGATCATATTTGAGGTTCTTCTGAGGATACATGTAATGATTCAC  250

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  286
                      ||||||||||||||||||||||||||||||||||
seq2  ----------------AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  284

seq1  AGAGAGACCTTTCTTGAGAGTACGAATCCATAAGCTCACTGATTATTGAG  336
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCTTTCTTGAGAGTACGAATCCATAAGCTCACTGATTATTGAG  334

seq1  TCCCTTACTCCTTATATAAGTAATTCATGTCACCTCTAATTGCCCCCCCT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCCCTTACTCCTTATATAAGTAATTCATGTCACCTCTAATTGCCCCCCC-  383

seq1  TTTTTTTTCAGAAAATCATTGCATACATGGAAAGAATGGGAAGGTATTGG  436
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTTTTTCAGAAAATCATTGCATACGTGGAAAGAATGGGAAGGTATTGG  433

seq1  ATCAAGACAGCCAGTACATTGTCCATGAACACATGAATATTCAAGAGAAG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGACAGCCAGTACATTGTCCATGAACACATGAATATTCAAGAGAAG  483

seq1  TCTTCTAAATGGGACAAGCTTAGCAATGTCATTCTTGAATCCCTCCAGTG  536
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTTCTAAATGGGACAAGTTTAGCAATGTCATTCTTGAATCCCTCCAGTG  533

seq1  TACACCTTACAAAACTAATCACAGCTCTGATGCTCTTCAATTCTCGAACC  586
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TACACCTTACAAAACTAATCACAGCTCTGATGCTCTTCAATTCTCGACCC  583

seq1  AAAAAAGACTTAAGCCCAGGAACACTAAAGAAGTTTGCAAATACAATGAC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGACTTAAGCCCAGGAACACTAAAGAAGTTTGCAAATACAATGAC  633

seq1  TCTGTAAACAGTTTAAGTTTGTTTTCTACCATTAGTCTCAATCAAGGAAT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAACAGTTTAAGTTTGTTTTCTACCATTAGTCTCAATCAAGGAAT  683

seq1  TAACATGCAGAAGAAAAAACACAACCGAAATGCAGAATTAGACAAGATTT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGCAGAAGAAAAAACACAACCGAAATGCAGAATTAGACAAGATTT  733

seq1  TTGTTTCTAAACATAAAGTCATGGTGAAAAAAGACAATATTGCGGGGAAC  786
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGTTTCTAAACATAAAGTCATGGTGAAAAAAGACAATATTGCAGGGAAC  783

seq1  CCTTACAAATGTAGTGAATTTCACAAATATCTTACCCAGAGAGAAAACCT  836
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTTACAAATGTAGTGAATTTCACAAATATCTTACCCAGAGAGAAAAACT  833

seq1  ACAAAGTCAGCAGAGAATTTATCATGGAAAGAAACCTTACAAAAGTAGTA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTCAGCAGAGAATTTATCATGGAAAGAAACCTTACAAAAGTAGTA  883

seq1  AAAGTGACAAATGCTTTACCCATCAGATCCATCTTAGTATTCATCAGGGA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGACAAATGCTTTACCCATCAGATCCATCTTAGTATTCATCAGGGA  933

seq1  ATTCATACAGAAGAGAAAATTTGCAAATGTAGTGAATGTGACAAATGTTT  986
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTCATACAGAAGAGAAAATTTACAAATGTAGTGAATGTGACAAATGTTT  983

seq1  TAAAAACAAATTCAATCTTACTATGCATCAGAGAATTCATACAGGAGAGA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAAATTCAATCTTACTATGCATCAGAGAATTCATACAGGAGAGA  1033

seq1  AACCTTACAAATGCAGTGAATGTGGCAAATGCTTTACTGATAAAACCAGT  1086
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACCTTACAAATGCAGTGAATGTGGCAAATGCTTTACTGATAGAACCAGT  1083

seq1  CTGAGAATTC  1096
      ||||||||||
seq2  CTGAGAATTC  1093