BAC Information

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BAC

Clone NameB6Ng01-302H13
Chromosome4 (Build37)
Map Location 118,604,322 - 118,779,289
singlet/doubletdoublet
Overlap geneOlfr1519, Lao1, LOC666703, OTTMUSG00000008833
Upstream geneSt3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329
Downstream geneSlc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302H13.bB6Ng01-302H13.g
ACCGA096509GA096510
length1,162324
definitionB6Ng01-302H13.b B6Ng01-302H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,604,322 - 118,605,456)(118,778,966 - 118,779,289)
sequence
gaattccaagctcagggtctgctcaaggactttctaggacattgaaacac
cggtggaggcttagctatatgtcaaaatcagtccttagaggcacttataa
taaaacaatactgaaagagagcacacggatccatacaccagactaatgca
gggacaggtttggagtataggtgctatgggtatgccaaggttccaggagg
ctaagtttccatgaaactctttgcctcaggactgcttccaggtttctagg
cctgtcacttgagtcactactggagtggatgtagcaaataagtaagtgat
aaaaatagtaagtaggaaaaattaaaataaaaatctaaaataaactttaa
aaacaaaacacagggataaatttccataacatggaaaaaaaagaaacaac
ttcatagatctactgaaaattaacaagagattcaagtgcttcgctgagag
tggtggggtatgcctttaatgcctttatgaaggctggaggctggaggatc
tctgtgagtttgaggctagctgggtctacacagtgagttctagccaagac
agggttacatagagtggatctatctcaagagggggaaaagtaatttgaat
ttttttataatcaaatgacatcatcaaagaatcaaaaattctcccaggtg
tggtaccccatgttgtaatcccagcactggagaggtagaagaagggagat
caaaaatgtgggagatctgtaagaatgtgggcagttccagggtagcctag
gatatatgagacttctcaaaacataaatatataagtaaacaatagtactg
agcattaactatgaaaatgtctggccacagaataaaatcagaggtttgag
gccacactagaaaaaaaaaaaaaaagttcaggactgaaccacagaggaat
atgctgactggttagagaagagctaatctgcagatgagaagaacaggcca
tacccaccaccatcattagggtttaaaaagtgtatcagcagtgggcaggc
caaaaggttgagaccaacgccccttgggatggtgccatgccaaccttaga
agcagatggtggggagtttctgaatgagaaaacccaagctcccttctcct
ttcttgcaaatgcaatcatttcacagagagttcacataggctctggaaca
ataatgtgatgt
cacttctctgtcctctctctgtaaatgttttatagcccctggaggcaact
gtttagaggcaaatttaccaggagctatggacactagatcagaggttaga
ttcttaggtggactgttatcttggagactgagtccttggaaacagaattt
aaccctgtagagaacaccaaagaaagcccacgagatacaaagccttagga
tagtgtgccgctgagagagggatgtggacagaagcccgaagaattggctt
cttgtagttattggctcctagaaactggggagcagggaggggggacgccg
gatgggggggggcagggggagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_118604322_118605456
seq2: B6Ng01-302H13.b_50_1211

seq1  GAATTCCAAGCTCAGGGTCTGCTCAAGGACTTTCTAGGACATTGAAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCTCAGGGTCTGCTCAAGGACTTTCTAGGACATTGAAACAC  50

seq1  CGGTGGAGGCTTAGCTATATGTCAAAATCAGTCCTTAGAGGCACTTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGAGGCTTAGCTATATGTCAAAATCAGTCCTTAGAGGCACTTATAA  100

seq1  TAAAACAATACTGAAAGAGAGCACACGGATCCATACACCAGACTAATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAATACTGAAAGAGAGCACACGGATCCATACACCAGACTAATGCA  150

seq1  GGGACAGGTTTGGAGTATAGGTGCTATGGGTATGCCAAGGTTCCAGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGGTTTGGAGTATAGGTGCTATGGGTATGCCAAGGTTCCAGGAGG  200

seq1  CTAAGTTTCCATGAAACTCTTTGCCTCAGGACTGCTTCCAGGTTTCTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTTCCATGAAACTCTTTGCCTCAGGACTGCTTCCAGGTTTCTAGG  250

seq1  CCTGTCACTTGAGTCACTACTGGAGTGGATGTAGCAAATAAGTAAGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCACTTGAGTCACTACTGGAGTGGATGTAGCAAATAAGTAAGTGAT  300

seq1  AAAAATAGTAAGTAGGAAAAATTAAAATAAAAATCTAAAATAAACTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGTAAGTAGGAAAAATTAAAATAAAAATCTAAAATAAACTTTAA  350

seq1  AAACAAAACACAGGGATAAATTTCCATAACATGGAAAAAAAAGAAACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACACAGGGATAAATTTCCATAACATGGAAAAAAAAGAAACAAC  400

seq1  TTCATAGATCTACTGAAAATTAACAAGAGATTCAAGTGCTTCGCTGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGATCTACTGAAAATTAACAAGAGATTCAAGTGCTTCGCTGAGAG  450

seq1  TGGTGGGGTATGCCTTTAATGCCTTTATGAAGGCTGGAGGCTGGAGGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGGTATGCCTTTAATGCCTTTATGAAGGCTGGAGGCTGGAGGATC  500

seq1  TCTGTGAGTTTGAGGCTAGCTGGGTCTACACAGTGAGTTCTAGCCAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAGTTTGAGGCTAGCTGGGTCTACACAGTGAGTTCTAGCCAAGAC  550

seq1  AGGGTTACATAGAGTGGATCTATCTCAAGAGGGGGAAAAGTAATTTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTACATAGAGTGGATCTATCTCAAGAGGGGGAAAAGTAATTTGAAT  600

seq1  TTTTTTATAATCAAATGACATCATCAAAGAATCAAAAATTCTCCCAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATAATCAAATGACATCATCAAAGAATCAAAAATTCTCCCAGGTG  650

seq1  TGGTACCCCATGTTGTAATCCCAGCACTGGAGAGGTAGAAGAAGGGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCCCATGTTGTAATCCCAGCACTGGAGAGGTAGAAGAAGGGAGAT  700

seq1  CAAAAATGTGGGAGATCTGTAAGAATGTGGGCAGTTCCAGGGTAGCCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGTGGGAGATCTGTAAGAATGTGGGCAGTTCCAGGGTAGCCTAG  750

seq1  GATATATGAGACTTCTCAAAACATAAATATATAAGTAAACAATAGTACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATGAGACTTCTCAAAACATAAATATATAAGTAAACAATAGTACTG  800

seq1  AGCATTAACTATGAAAATGTCTGGCCACAGAATAAAATCAGAGG-TTGAG  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGCATTAACTATGAAAATGTCTGGCCACAGAATAAAATCAGAGGTTTGAG  850

seq1  GCCACACTAG--AAAAAAAAAAAAAGTTCAGGGACTGAACCACAGAGGAA  897
      ||||||||||  |||||||||||||||||| |||||||||||||||||||
seq2  GCCACACTAGAAAAAAAAAAAAAAAGTTCA-GGACTGAACCACAGAGGAA  899

seq1  TATGCTGACTGGTAAGAGAAGAGCTAATCTGCAGATGAGA--GACAGGCC  945
      ||||||||||||| ||||||||||||||||||||||||||   |||||||
seq2  TATGCTGACTGGTTAGAGAAGAGCTAATCTGCAGATGAGAAGAACAGGCC  949

seq1  ATACCCACCACCATCA-TAGGGTT--AAAAGTGTATCAGCAGTGGGCA-G  991
      |||||||||||||||| |||||||  |||||||||||||||||||||| |
seq2  ATACCCACCACCATCATTAGGGTTTAAAAAGTGTATCAGCAGTGGGCAGG  999

seq1  CCAAA--GGTGAGAC--ACGCCC--TTGGATGGTG-CATGC--AACTTAG  1032
      |||||  | ||||||  ||||||  | |||||||| |||||  | |||||
seq2  CCAAAAGGTTGAGACCAACGCCCCTTGGGATGGTGCCATGCCAACCTTAG  1049

seq1  -AGCAGAT-GTTGGGAGGTTCTG-ATGAGAA---CCCAGCT-CCTTCT-C  1074
       ||||||| || ||||| ||||| |||||||   || |||| |||||| |
seq2  AAGCAGATGGTGGGGAGTTTCTGAATGAGAAAACCCAAGCTCCCTTCTCC  1099

seq1  TTTC-TGC-AATGC-ATCATTTCACAGGAGAGGTCACCATAGCCTCT-GA  1120
      |||| ||| ||||| ||||||||||| ||||| ||| ||||| |||| ||
seq2  TTTCTTGCAAATGCAATCATTTCACA-GAGAGTTCA-CATAGGCTCTGGA  1147

seq1  ACATATATGTGATGT  1135
      |||   |||||||||
seq2  ACAATAATGTGATGT  1162

seq1: chr4_118778966_118779289
seq2: B6Ng01-302H13.g_73_396 (reverse)

seq1  CCTCTCCCCCTGCCCCCCCCCATCCGGCGTCCCCCCTCCCTGCTCCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCCCTGCCCCCCCCCATCCGGCGTCCCCCCTCCCTGCTCCCCAG  50

seq1  TTTCTAGGAGCCAATAACTACAAGAAGCCAATTCTTCGGGCTTCTGTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGGAGCCAATAACTACAAGAAGCCAATTCTTCGGGCTTCTGTCCA  100

seq1  CATCCCTCTCTCAGCGGCACACTATCCTAAGGCTTTGTATCTCGTGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCTCTCAGCGGCACACTATCCTAAGGCTTTGTATCTCGTGGGCT  150

seq1  TTCTTTGGTGTTCTCTACAGGGTTAAATTCTGTTTCCAAGGACTCAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGTGTTCTCTACAGGGTTAAATTCTGTTTCCAAGGACTCAGTCT  200

seq1  CCAAGATAACAGTCCACCTAAGAATCTAACCTCTGATCTAGTGTCCATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATAACAGTCCACCTAAGAATCTAACCTCTGATCTAGTGTCCATAG  250

seq1  CTCCTGGTAAATTTGCCTCTAAACAGTTGCCTCCAGGGGCTATAAAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGTAAATTTGCCTCTAAACAGTTGCCTCCAGGGGCTATAAAACAT  300

seq1  TTACAGAGAGAGGACAGAGAAGTG  324
      ||||||||||||||||||||||||
seq2  TTACAGAGAGAGGACAGAGAAGTG  324