BAC Information

Click to search

BAC

Clone NameB6Ng01-302K22
Chromosome4 (Build37)
Map Location 58,891,282 - 58,892,387
singlet/doubletsinglet
Overlap geneAI314180
Upstream geneAkap2, D630039A03Rik, Txn1, Txndc8, Svep1, Musk, Edg2, LOC675306, LOC433711, Olfr267
Downstream geneLOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik, Snx30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302K22.bB6Ng01-302K22.g
ACCGA096670GA096671
length1,1951,142
definitionB6Ng01-302K22.b B6Ng01-302K22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccttgcattggagcacagatgttcagaattgagagttcatcttg
gtagagttttcctttgaagagtatgaagtgtccttatctttttagataac
ttttggttgaaagtcgattttattcactattagaatggctactccagttt
gtttcttgggaccatttgcttggacaatttttttccagccttttactctg
aggtagtgtctgtctttgtcactgaggtgtgttttctgtatgcagcaaaa
tgcttggtcctccttatttatctattttgttagtctatgtctttttattg
ggggaattgtgtccgttgatgttaaaagatattaaggagaagtgattgtt
gcttcctgttatttttgtttttagaggtggagttatgtttgtgtgactat
cttctttggggtttgttgaaagacgattatgttcttgctttttctagggt
gtagtttccctccttctgttggagttttccatctattatcctttgtaggg
ctggatctgtagaaagatattgtgtaaatttgtttttgtcatggaatatc
ttaatttttccatctatgttaatttagagttttgcttagtatagagcctg
gattggaatttttgttctcttcgagtctgtatgacatctgcccaggatct
tctggcttttatagtgtctggtgagaagtctggtgtaattctgataggtc
tgcctttatatgttacttgacctttttcccttactcattttaaaagtctt
tctttgtttagtgcatttagtgttttgactattatgtgactggaggaatt
tcttttctggtccagtctatttggagttctgtaggcttcttgtatgttca
tgggtatctctttctttaggtaagggaagttttcttctatgatgtcggtg
aagatatttactggctctttaagttgggaatcctcactctcttctatact
attatccttaaggttcatcttctcattgtgtcctggattcctaagaattg
tttttggggttaggagcttttgattttggcaatttcttgactgtggtatc
atgtttcatagcatctctgcaatcttgaagtcctcctctctattctcttg
tatttcggtttggcaatggccttgcaatcaatgaacttctagcttctcct
tctcatgattttctcaatgcgtactagaggcgcgtgagctagctg
gaattcttaccactctgggtttcagatagatataatttgccatattctat
taggtccagttccttttctgaaaccaattttctccttgaaatttattccc
tagaactcagtgttcctactacattttcttacaagtacgcctatttggcc
aaccaagtatatctagagacagtagaatcttatattttacattgtaataa
tcttggtatcttgcaaaatgcagatactgtgtttctgattctgatacatc
cctttctgcgttataaactttatgttccttaaaagaaagaagtagctact
ttccactaagacaagtaatgtctaagaaatgaatttatttttaagatata
attgataattctagttctgtctttgttttaggtaatggaactgctggtcc
atctgaataaacgtataaaaagccgccccaaaatacagcttccagtagaa
acactattggttcagtaccaggaccctgctgcagtttcctttgtcacggt
gagagttagtttggaattttttttgcggggaggggggtttacgtcagtct
tctcagtgtttagttgatgccatcaatgtttattggcaaacttaaaagtt
tcattcttagaccatacctaactgaaacagttgttttttttttttttttt
tttttttaatgctgtgttattttttcatggagtactgattcacaggtaat
gctgcttcaaagaagttataggaacatggtaatgaatggccatttattgg
gcaaagaaatgttggtgaaatgactgtgaggtatttaatataaaaaaaga
atgattttacctatacagaatctcgaacaagttaatatcaaagacattaa
ggagtagagtaccgattatcagaaggttggggggaaaattaaattgctag
ggtactaagtctagagaacagggaacttgtgatgtgctggtggcttgccc
cagttggaatgactgtaggtaatgggtaccttcctgccaacagggtggtt
ttaccaggcgcccaggtggtgggtgtaggatgccaggttccttggccctg
ttaaggtggagggccaggaggtattggcctggagcctcagaaggttccaa
agaaataggccttggaacagttaatgggatgctctcttcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_58891282_58892387
seq2: B6Ng01-302K22.g_65_1206 (reverse)

seq1  CAAGA--AGAGCATCCCATAATTTGTTC--AGG-CTA-TTCTT--GAA-C  41
      |||||  |||||||||||| |  |||||  ||| ||| |||||  ||| |
seq2  CAAGAAGAGAGCATCCCATTAACTGTTCCAAGGCCTATTTCTTTGGAACC  50

seq1  TTCTGA-GCTCAAG--CAATA-CTCCTG--CCTCAACC-TAACAAGCCAA  84
      |||||| |||| ||  ||||| ||||||  |||| ||| ||||| | | |
seq2  TTCTGAGGCTCCAGGCCAATACCTCCTGGCCCTCCACCTTAACAGGGCCA  100

seq1  AGGAA-CTGCAATCCTACA-CCAC--ACTGGGCGCCT-GTAAA--CA-CC  126
      ||||| |||  |||||||| ||||   |||||||||| |||||  || ||
seq2  AGGAACCTGGCATCCTACACCCACCACCTGGGCGCCTGGTAAAACCACCC  150

seq1  TGTTTGCA-GAAAGTACCCATTACCTACAGTCATTCCAACT-GCGCAAGC  174
      |||| ||| ||| |||||||||||||||||||||||||||| | ||||||
seq2  TGTTGGCAGGAAGGTACCCATTACCTACAGTCATTCCAACTGGGGCAAGC  200

seq1  --ACAGCACATCACAAGTT-CCTGTTCTCTAGACTTAGTA-CCTAGCAA-  219
         |||||||||||||||| |||||||||||||||||||| |||||||| 
seq2  CACCAGCACATCACAAGTTCCCTGTTCTCTAGACTTAGTACCCTAGCAAT  250

seq1  TTAATTTTCCCCC--AACTTCTGATAATCGGTACTCTACT-CTTAATGTC  266
      |||||||||||||  | ||||||||||||||||||||||| |||||||||
seq2  TTAATTTTCCCCCCAACCTTCTGATAATCGGTACTCTACTCCTTAATGTC  300

seq1  TTTGATATTAACTTGTTC-AGATTCTGTATAAGTAAAATCATTC-TTTTT  314
      |||||||||||||||||| |||||||||||| |||||||||||| |||||
seq2  TTTGATATTAACTTGTTCGAGATTCTGTATAGGTAAAATCATTCTTTTTT  350

seq1  TATATTAAATACCTCACAGTCATTTCACCAACATTTCTTTGCCCAATAAA  364
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAAATACCTCACAGTCATTTCACCAACATTTCTTTGCCCAATAAA  400

seq1  TGGCCATTCATTACCATGTTCCTATAACTTCTTTGAAGCAGCATTACCTG  414
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATTCATTACCATGTTCCTATAACTTCTTTGAAGCAGCATTACCTG  450

seq1  TGAATCAGTACTCCATGAAAAAATAACACAGCATTAAAAAAAAAAAAAAA  464
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAGTACTCCATGAAAAAATAACACAGCATTAAAAAAAAAAAAAAA  500

seq1  AAAAAAAAACAACTGTTTCAGTTAGGTATGGTCTAAGAATGAAACTTTTA  514
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACAACTGTTTCAGTTAGGTATGGTCTAAGAATGAAACTTTTA  550

seq1  AGTTTGCCAATAAACATTGATGGCATCAACTAAACACTGAGAAGACTGAC  564
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCCAATAAACATTGATGGCATCAACTAAACACTGAGAAGACTGAC  600

seq1  GTAAACCCCCCTCCCCGCAAAAAAAATTCCAAACTAACTCTCACCGTGAC  614
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCCCCCTCCCCGCAAAAAAAATTCCAAACTAACTCTCACCGTGAC  650

seq1  AAAGGAAACTGCAGCAGGGTCCTGGTACTGAACCAATAGTGTTTCTACTG  664
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAACTGCAGCAGGGTCCTGGTACTGAACCAATAGTGTTTCTACTG  700

seq1  GAAGCTGTATTTTGGGGCGGCTTTTTATACGTTTATTCAGATGGACCAGC  714
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGTATTTTGGGGCGGCTTTTTATACGTTTATTCAGATGGACCAGC  750

seq1  AGTTCCATTACCTAAAACAAAGACAGAACTAGAATTATCAATTATATCTT  764
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCATTACCTAAAACAAAGACAGAACTAGAATTATCAATTATATCTT  800

seq1  AAAAATAAATTCATTTCTTAGACATTACTTGTCTTAGTGGAAAGTAGCTA  814
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATTCATTTCTTAGACATTACTTGTCTTAGTGGAAAGTAGCTA  850

seq1  CTTCTTTCTTTTAAGGAACATAAAGTTTATAACGCAGAAAGGGATGTATC  864
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTTTTAAGGAACATAAAGTTTATAACGCAGAAAGGGATGTATC  900

seq1  AGAATCAGAAACACAGTATCTGCATTTTGCAAGATACCAAGATTATTACA  914
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAGAAACACAGTATCTGCATTTTGCAAGATACCAAGATTATTACA  950

seq1  ATGTAAAATATAAGATTCTACTGTCTCTAGATATACTTGGTTGGCCAAAT  964
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAATATAAGATTCTACTGTCTCTAGATATACTTGGTTGGCCAAAT  1000

seq1  AGGCGTACTTGTAAGAAAATGTAGTAGGAACACTGAGTTCTAGGGAATAA  1014
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTACTTGTAAGAAAATGTAGTAGGAACACTGAGTTCTAGGGAATAA  1050

seq1  ATTTCAAGGAGAAAATTGGTTTCAGAAAAGGAACTGGACCTAATAGAATA  1064
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGGAGAAAATTGGTTTCAGAAAAGGAACTGGACCTAATAGAATA  1100

seq1  TGGCAAATTATATCTATCTGAAACCCAGAGTGGTAAGAATTC  1106
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAATTATATCTATCTGAAACCCAGAGTGGTAAGAATTC  1142