BAC Information

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BAC

Clone NameB6Ng01-303J08
Chromosome4 (Build37)
Map Location 113,576,290 - 113,695,769
singlet/doubletdoublet
Overlap geneLOC242627
Upstream geneLOC433745, LOC545668, LOC230622, LOC100040607
Downstream geneLOC100040625, A630098G03Rik, LOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303J08.bB6Ng01-303J08.g
ACCGA097349GA097350
length1,073294
definitionB6Ng01-303J08.b B6Ng01-303J08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,576,290 - 113,577,372)(113,695,476 - 113,695,769)
sequence
gaattctctaggtataggatgatctagtgtagtaccatgatacatcttag
aagcaatatcagttgtatccctctccattctaccataggttgtgcctcag
cttttaatgtttaagaacttgtttattcacaaggtatacactttttttca
aacaccaagatacctaccataatatgccttgcatctggatatcatatgat
tttgttcatggctgtgaccaatattaattaaaaatgggtgaatgtttcta
cagcaatttttgaatccttgccaataagaggaattttcctttctcatcaa
tcttttctttaggaacttaaaccttcaaacccatgtttactttctacttc
agcatgatctatttaactctgaatttggatttcagggtattgctgtataa
ttggcacctgccttctgagtatcatcattccattggttggcttcatgagt
cagttaccccagctaatacatagtatttcatattttagtgaaactttccc
tagcctgccagatgtcacgttgatttttgggtgaaccttgcagaccattt
tttttctaccttctgctctatgtatccaatcttgattgcattaaatcttt
tcagaaatcaacctaaataactgtgtaagtcattcaaatcagtcaaagac
ttttccacctctcaaagatcactaaaaaatctgcttttacacgaaatttt
ccgatgcttatccttttgctaatgttctccaatctctgctatttataaga
aaatttgcctggaaatagttaacagttctcagtgtctgtgagtcagtcca
tccatagggatatctttacattgtcttagcccatgttgaatgcatagata
taatactgtctctccagttctgtagtacccacattttcccaagaatttcc
atatctggttagtccagactctggttcttagtaactctcttttacttaaa
atcttctatacttcaacattggagaatacaatttattcctaaacatcatc
atattgttcttcatactgttctaaaatattgttctagatcaatatctgag
cactgtttccttctcttcttatt

caaacataaactatctgcagcaggaaaaataaacatgcttttgttagagc
acaatttgtcattgtcatgggctgtgaacaatcagaattattattaatta
tttggtagagttggttcctcttgaatgtatgagcttcttttcattccaga
gctttcaggttttctgaaaacaaataaatctatatatcatattctgtcat
gttacagggatccagtgacaagaagaagaataattatttgtaagaacaac
tatcattttttgttatttggtggtgatggtatgtgtgtgtgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_113576290_113577372
seq2: B6Ng01-303J08.b_45_1117

seq1  GAATTCTCTAGGTATAGGATGATCTAGTGTAGTACCATGATACATCTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGGTATAGGATGATCTAGTGTAGTACCATGATACATCTTAG  50

seq1  AAGCAATATCAGTTGTATCCCTCTCCATTCTACCATAGGTTGTGCCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATATCAGTTGTATCCCTCTCCATTCTACCATAGGTTGTGCCTCAG  100

seq1  CTTTTAATGTTTAAGAACTTGTTTATTCACAAGGTATACACTTTTTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATGTTTAAGAACTTGTTTATTCACAAGGTATACACTTTTTTTCA  150

seq1  AACACCAAGATACCTACCATAATATGCCTTGCATCTGGATATCATATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAAGATACCTACCATAATATGCCTTGCATCTGGATATCATATGAT  200

seq1  TTTGTTCATGGCTGTGACCAATATTAATTAAAAATGGGTGAATGTTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCATGGCTGTGACCAATATTAATTAAAAATGGGTGAATGTTTCTA  250

seq1  CAGCAATTTTTGAATCCTTGCCAATAAGAGGAATTTTCCTTTCTCATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATTTTTGAATCCTTGCCAATAAGAGGAATTTTCCTTTCTCATCAA  300

seq1  TCTTTTCTTTAGGAACTTAAACCTTCAAACCCATGTTTACTTTCTACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTAGGAACTTAAACCTTCAAACCCATGTTTACTTTCTACTTC  350

seq1  AGCATGATCTATTTAACTCTGAATTTGGATTTCAGGGTATTGCTGTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGATCTATTTAACTCTGAATTTGGATTTCAGGGTATTGCTGTATAA  400

seq1  TTGGCACCTGCCTTCTGAGTATCATCATTCCATTGGTTGGCTTCATGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACCTGCCTTCTGAGTATCATCATTCCATTGGTTGGCTTCATGAGT  450

seq1  CAGTTACCCCAGCTAATACATAGTATTTCATATTTTAGTGAAACTTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACCCCAGCTAATACATAGTATTTCATATTTTAGTGAAACTTTCCC  500

seq1  TAGCCTGCCAGATGTCACGTTGATTTTTGGGTGAACCTTGCAGACCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGCCAGATGTCACGTTGATTTTTGGGTGAACCTTGCAGACCATTT  550

seq1  TTTTTCTACCTTCTGCTCTATGTATCCAATCTTGATTGCATTAAATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTACCTTCTGCTCTATGTATCCAATCTTGATTGCATTAAATCTTT  600

seq1  TCAGAAATCAACCTAAATAACTGTGTAAGTCATTCAAATCAGTCAAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATCAACCTAAATAACTGTGTAAGTCATTCAAATCAGTCAAAGAC  650

seq1  TTTTCCACCTCTCAAAGATCACTAAAAAATCTGCTTTTACACGAAATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACCTCTCAAAGATCACTAAAAAATCTGCTTTTACACGAAATTTT  700

seq1  CCGATGCTTATCCTTTTGCTAATGTTCTCCAATCTCTGCTATTTATAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGCTTATCCTTTTGCTAATGTTCTCCAATCTCTGCTATTTATAAGA  750

seq1  AAATTTGCCTGGAAATAGTTAACAGTTCTCAGTGTCTGTGAGTCAGTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGCCTGGAAATAGTTAACAGTTCTCAGTGTCTGTGAGTCAGTCCA  800

seq1  TCCATAGGGATATCTTTACATTGTCTTAGCCCATGTTGAATGCATAGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGGGATATCTTTACATTGTCTTAGCCCATGTTGAATGCATAGATA  850

seq1  TAATACTGTCTCTCCAGTTCTGTAGTACCCACATTTTCCCAAGAATTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTGTCTCTCCAGTTCTGTAGTACCCACATTTTCCCAAGAATTTCC  900

seq1  ATATCTGGTTAGTCCAGACTCTGGTTCTTAGTAACTCTCTTTTAACTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATATCTGGTTAGTCCAGACTCTGGTTCTTAGTAACTCTCTTTT-ACTTAA  949

seq1  AATCTTCTATACTTCAACATTGGAG-ATACAATTTATTCCCTAAACATCA  999
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  AATCTTCTATACTTCAACATTGGAGAATACAATTTATT-CCTAAACATCA  998

seq1  TTCTTTATTTTTTTCTTTCCAATACTGTTCCTAAAATA-TGTTCTAGATC  1048
          | || || |||||    |||||||| |||||||| |||||||||||
seq2  ----TCATATTGTTCTT---CATACTGTT-CTAAAATATTGTTCTAGATC  1040

seq1  CAAATATCTGAGCACTGTTTCCTTCTCTTCTTATT  1083
        |||||||||||||||||||||||||||||||||
seq2  --AATATCTGAGCACTGTTTCCTTCTCTTCTTATT  1073


seq1: chr4_113695476_113695769
seq2: B6Ng01-303J08.g_72_365 (reverse)

seq1  TCACACACACACATACCATCACCACCAAATAACAAAAAATGATAGTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACACACATACCATCACCACCAAATAACAAAAAATGATAGTTGTT  50

seq1  CTTACAAATAATTATTCTTCTTCTTGTCACTGGATCCCTGTAACATGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAATAATTATTCTTCTTCTTGTCACTGGATCCCTGTAACATGACA  100

seq1  GAATATGATATATAGATTTATTTGTTTTCAGAAAACCTGAAAGCTCTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGATATATAGATTTATTTGTTTTCAGAAAACCTGAAAGCTCTGGA  150

seq1  ATGAAAAGAAGCTCATACATTCAAGAGGAACCAACTCTACCAAATAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGAAGCTCATACATTCAAGAGGAACCAACTCTACCAAATAATTA  200

seq1  ATAATAATTCTGATTGTTCACAGCCCATGACAATGACAAATTGTGCTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATTCTGATTGTTCACAGCCCATGACAATGACAAATTGTGCTCTA  250

seq1  ACAAAAGCATGTTTATTTTTCCTGCTGCAGATAGTTTATGTTTG  294
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGCATGTTTATTTTTCCTGCTGCAGATAGTTTATGTTTG  294


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