BAC Information

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BAC

Clone NameB6Ng01-303M04
Chromosome4 (Build37)
Map Location 86,202,851 - 86,320,971
singlet/doubletdoublet
Overlap gene4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp
Upstream geneA930009N24, LOC668052, Adamtsl1
Downstream geneEG624685, Dennd4c, Rps6, Asah3l, Slc24a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303M04.bB6Ng01-303M04.g
ACCGA097482GA097483
length1,157491
definitionB6Ng01-303M04.b B6Ng01-303M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,202,851 - 86,204,008)(86,320,475 - 86,320,971)
sequence
gaattcaaagtcttctgttttcagagtgtcctcttaacctattctcccaa
atacaataattttgttatttcatgtaacatatgtagctgtaaaatccttt
gcagatcttagggtattaacagaatagatagaatccatgtgcatagacat
acaccctatcccttcacttgtaatagtcctgtgaggagagtattcctagg
gaaatttgaatggggagacgttcggttcctagcccagatcccacatttag
tgacaaccccagagggctagtccccgaggccactcctttcacttggtctt
agccagaagcctgggaagcaagtttatgtactgccccttctgctatcccc
tggctggcacagccctgcagttccctagctgtcctggcaaagcagccaga
aggaccatctcagagaccgcagcccaacgttcctctccaaaaccctgcct
tcactgtgctttgcaccatcatggccctgaagacaaggggcagaaaggca
tcctgcccaaaaactacagcgaactcgcccctggattagctatttatttc
aacactgcaacagttggtgcccgtgcactatggctcccaaagtaccaatt
tctgtaagtgagaaactcacccacacaaaagaactattgttctaacaatt
gcaacagaagaaacaagaccggccccagcctgtccagggtttccatcatg
tcttaacagcatgtagacaaggctgggcccagcccactctcaaagtgcct
gaatctctaccctgcagaaaacacacacgcgcacacacacacacacacac
acacacacacacacacactacctgatcagcgctgattcgacatgtgtgca
tcaaatattagtcaacaatgttgcagtttaaaacccgaatccagtgcgat
gctgcctagcgaagcagcgggatgaagaagacacatcctgtcttcgttcc
aggaaaggggcttggcacccctaaggagtgtgaaaatcagctccccctcc
ccagattgccctttggagactacctttaccccgcaggagccacagttgca
gatgcaagtcctctccccatcttccacctcggaacttccactaaggcatc
cgccttagagatccagctgcctgggacacgaatcacactctcggtgccat
tgaccga

acattctagaccaggctggcatggagctcagaggtccatctgtctctacc
tcctgagtgttggagttaaaggcacatgccaccaccatctggtggggagt
tttcttgatccatgattgatgtgggagggcccagctcactgggtggtgtc
aaccctgagctgctgcttctgggtgctatgagaaggaggctaagttatct
atggtgagcacactagtaagcagcacccctctgtggcctctgtatcagct
tctgacttgagaagtttgtggtcttagggtggtgagatgccttacagagg
cacagagctgaatcttccacagcagagcttaccagagggttcagatattc
tagacagagagggaggaggaaatcagagacccagcagcacaaagaagggg
attggaaaagggagactcagacagagtggagctagaacacatggtgttca
tacaagagggagaagaaatgctggtggaaggggggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_86202851_86204008
seq2: B6Ng01-303M04.b_44_1200

seq1  GAATTCAAAGTCTTCTGTTTTCAGAGTGTCCTCTTAACCTATTCTCCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTCTTCTGTTTTCAGAGTGTCCTCTTAACCTATTCTCCCAA  50

seq1  ATACAATAATTTTGTTATTTCATGTAACATATGTAGCTGTAAAATCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATAATTTTGTTATTTCATGTAACATATGTAGCTGTAAAATCCTTT  100

seq1  GCAGATCTTAGGGTATTAACAGAATAGATAGAATCCATGTGCATAGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCTTAGGGTATTAACAGAATAGATAGAATCCATGTGCATAGACAT  150

seq1  ACACCCTATCCCTTCACTTGTAATAGTCCTGTGAGGAGAGTATTCCTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTATCCCTTCACTTGTAATAGTCCTGTGAGGAGAGTATTCCTAGG  200

seq1  GAAATTTGAATGGGGAGACGTTCGGTTCCTAGCCCAGATCCCACATTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGAATGGGGAGACGTTCGGTTCCTAGCCCAGATCCCACATTTAG  250

seq1  TGACAACCCCAGAGGGCTAGTCCCCGAGGCCACTCCTTTCACTTGGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACCCCAGAGGGCTAGTCCCCGAGGCCACTCCTTTCACTTGGTCTT  300

seq1  AGCCAGAAGCCTGGGAAGCAAGTTTATGTACTGCCCCTTCTGCTATCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAAGCCTGGGAAGCAAGTTTATGTACTGCCCCTTCTGCTATCCCC  350

seq1  TGGCTGGCACAGCCCTGCAGTTCCCTAGCTGTCCTGGCAAAGCAGCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGCACAGCCCTGCAGTTCCCTAGCTGTCCTGGCAAAGCAGCCAGA  400

seq1  AGGACCATCTCAGAGACCGCAGCCCAACGTTCCTCTCCAAAACCCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCATCTCAGAGACCGCAGCCCAACGTTCCTCTCCAAAACCCTGCCT  450

seq1  TCACTGTGCTTTGCACCATCATGGCCCTGAAGACAAGGGGCAGAAAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGCTTTGCACCATCATGGCCCTGAAGACAAGGGGCAGAAAGGCA  500

seq1  TCCTGCCCAAAAACTACAGCGAACTCGCCCCTGGATTAGCTATTTATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCAAAAACTACAGCGAACTCGCCCCTGGATTAGCTATTTATTTC  550

seq1  AACACTGCAACAGTTGGTGCCCGTGCACTATGGCTCCCAAAGTACCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGCAACAGTTGGTGCCCGTGCACTATGGCTCCCAAAGTACCAATT  600

seq1  TCTGTAAGTGAGAAACTCACCCACACAAAAGAACTATTGTTCTAACAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGTGAGAAACTCACCCACACAAAAGAACTATTGTTCTAACAATT  650

seq1  GCAACAGAAGAAACAAGACCGGCCCCAGCCTGTCCAGGGTTTCCATCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGAAGAAACAAGACCGGCCCCAGCCTGTCCAGGGTTTCCATCATG  700

seq1  TCTTAACAGCATGTAGACAAGGCTGGGCCCAGCCCACTCTCAAAGTGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACAGCATGTAGACAAGGCTGGGCCCAGCCCACTCTCAAAGTGCCT  750

seq1  GAATCTCTACCCTGCAGAAAACACACACGCGCACACACACACACACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTACCCTGCAGAAAACACACACGCGCACACACACACACACACAC  800

seq1  ACACACACACACACACACTACCTGATCAGCGCTGATTCGACATGTGTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACTACCTGATCAGCGCTGATTCGACATGTGTGCA  850

seq1  TCAAATATTAGTCAACAATGTTGCAGTTTAAAACCCGAATCCAGTGCGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATTAGTCAACAATGTTGCAGTTTAAAACCCGAATCCAGTGCGAT  900

seq1  GCTGCCTAGCGAAGCAGCGGGATGAAGAAGACACATCCTGTCTTCGTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTAGCGAAGCAGCGGGATGAAGAAGACACATCCTGTCTTCGTTCC  950

seq1  AGGAAAGGGGCTTGGCA-CCCTAGGGAGTGTGAAAATCAGGCTCCCCTCC  999
      ||||||||||||||||| ||||| ||||||||||||||||   |||||||
seq2  AGGAAAGGGGCTTGGCACCCCTAAGGAGTGTGAAAATCAGCTCCCCCTCC  1000

seq1  CCAGATTGCCCTTGGGAGGACTACCTT--ACCCGCAGGAG-CACAGGTTG  1046
      ||||||||||||| ||| |||||||||   |||||||||| |||| ||||
seq2  CCAGATTGCCCTTTGGA-GACTACCTTTACCCCGCAGGAGCCACA-GTTG  1048

seq1  CAGATGCAAGTCCTCTTCCCCATCCTTCACCTCGGACTTTCCACTAAGGC  1096
      ||||||||||||||| |||||||| | |||||||||  ||||||||||||
seq2  CAGATGCAAGTCCTC-TCCCCATCTTCCACCTCGGAACTTCCACTAAGGC  1097

seq1  AATCGCC-TAGAGGATCCCAGCTGCCTGGGACAACGATCACACTTCTTCG  1145
      |  |||| |||| ||| ||||||||||||||||   ||||||||   |||
seq2  ATCCGCCTTAGA-GAT-CCAGCTGCCTGGGACACGAATCACACT--CTCG  1143

seq1  GTGCC-TTGACCGA  1158
      ||||| ||||||||
seq2  GTGCCATTGACCGA  1157


seq1: chr4_86320475_86320971
seq2: B6Ng01-303M04.g_68_564 (reverse)

seq1  CCCCCACCCCCCTTCCACCAGCATTTCTTCTCCCTCTTGTATGAACACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCCCTTCCACCAGCATTTCTTCTCCCTCTTGTATGAACACCA  50

seq1  TGTGTTCTAGCTCCACTCTGTCTGAGTCTCCCTTTTCCAATCCCCTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTAGCTCCACTCTGTCTGAGTCTCCCTTTTCCAATCCCCTTCTT  100

seq1  TGTGCTGCTGGGTCTCTGATTTCCTCCTCCCTCTCTGTCTAGAATATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGCTGGGTCTCTGATTTCCTCCTCCCTCTCTGTCTAGAATATCTG  150

seq1  AACCCTCTGGTAAGCTCTGCTGTGGAAGATTCAGCTCTGTGCCTCTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCTGGTAAGCTCTGCTGTGGAAGATTCAGCTCTGTGCCTCTGTAA  200

seq1  GGCATCTCACCACCCTAAGACCACAAACTTCTCAAGTCAGAAGCTGATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTCACCACCCTAAGACCACAAACTTCTCAAGTCAGAAGCTGATAC  250

seq1  AGAGGCCACAGAGGGGTGCTGCTTACTAGTGTGCTCACCATAGATAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCACAGAGGGGTGCTGCTTACTAGTGTGCTCACCATAGATAACTT  300

seq1  AGCCTCCTTCTCATAGCACCCAGAAGCAGCAGCTCAGGGTTGACACCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCTTCTCATAGCACCCAGAAGCAGCAGCTCAGGGTTGACACCACC  350

seq1  CAGTGAGCTGGGCCCTCCCACATCAATCATGGATCAAGAAAACTCCCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGCTGGGCCCTCCCACATCAATCATGGATCAAGAAAACTCCCCAC  400

seq1  CAGATGGTGGTGGCATGTGCCTTTAACTCCAACACTCAGGAGGTAGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGTGGTGGCATGTGCCTTTAACTCCAACACTCAGGAGGTAGAGAC  450

seq1  AGATGGACCTCTGAGCTCCATGCCAGCCTGGTCTAGAATGTGAATTC  497
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACCTCTGAGCTCCATGCCAGCCTGGTCTAGAATGTGAATTC  497


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