BAC Information

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BAC

Clone NameB6Ng01-304H02
Chromosome4 (Build37)
Map Location 13,030,411 - 13,176,247
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592, OTTMUSG00000004461
Downstream geneLOC100039988, Runx1t1, LOC625831, LOC433687, LOC100040030
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304H02.bB6Ng01-304H02.g
ACCGA097998GA097999
length1,1321,129
definitionB6Ng01-304H02.b B6Ng01-304H02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,175,109 - 13,176,247)(13,030,411 - 13,031,546)
sequence
gaattcttcaaagagaatggacaggaagtcacttctctatttttggaact
cattaacaaacaaaagcagactatatgtgccttccacacctatgaacaac
ttccaagtgaccttttatttatatcaccaccacccccccccccaaaaaaa
attctccggtaagcaattttctatgcacagagttattcctgtagtttggc
agatgaggggcgggggaggcgaagaggaccacaaacactaagaatcaaat
gcaagctcagctcgtcagttcctctgccaaaaagtgcgctgaagccaacg
gacctcccacgttctccatagtgtgcttctgtgcatggtgatctgcaaat
attatcattccatgacaatgcagtttcatcaaggtacgtctcaatccatg
ggatacgagtcccacacaacagacggggactttggcggagctgtgtgcac
gctgcgtgtgttacttactggttatattgcggtggccacactgagtcccg
tatggcgcagtattaacgaatggcatgcaagcaccttctgtcgaaacatc
tgcgacagggaaatttcaggcatttttccagaaaatttttgtgctctgga
ccaaattttcattaggactctgaaacctggcaagcagcattgttgtgtat
gattttttttttttttaaataaactgggacatgcctttgttacaggagcg
agggaaagggccctgccatggctcccttctattctaaaaagttcaggaaa
catatgacagctcacaaaataacatctcccaacttttggctttttgtcga
catacaaataaaattcacagtttgggatatgtagcttttcccatctcagg
gtaagagattccaatggaggcttcctcaagaaacggtttgtgaggaggac
atgctagcaacaggatgatttgttcgtgtttcatttttgatgctggctgc
caaaaaaataaataaaacaaatccacgcaagagtttttacttgtttaagg
gacagcatgtcccagaataggaaaaataaatcaagagcagtgcattttgt
acatgctgctggactcataaaaacacacgaatccaaacaagagccagcct
ccatatgtcactcacaagaagtatggagtttt

gaattctgcaggcaatgtaattagcatgggggcactgtggaatctttaca
gaactgccaattagcacttaagaaataatttgcttctggtacaaagacaa
agtgacagacagtgcacttgaaaagccctaactgcatttgagagtcttga
ggatatttctttttttattacaaatgaaatattttcaggttcgcaatgct
ggccatactaatttgtatgaatccaacccagtcaattgcatatctttagg
tggaatttaattaattaaataactaattcttttttttttcaaattatttt
aaaaatccaatatattaatgtgtcttgattttcacaatatgtataagaca
gagtttaccctttttttggtacgtatcttaggggctattttactttgtcc
aggaagtcctaagatttgagtcattcatactcataacatcctgatactca
gtgcaagatagaatatggaagtgtggtcagttactgtcacctttgacctt
cgtgtatcattggttctattgactgaaatgtagaaataatgaatggaagg
gctgcatcattatttgatgttctcaagaaaggaggtgttaggtctcaaga
agaggcctctttgatgattcctgccatggaggtagctcagtctggctgtg
cttgttggtttgaaaacaatgctgataaaatagagtcctggactggcttt
caccttaatgtttatgactttgcttagggatggctatattcatccaaagg
ccaattctgccatttggaaatatatgctacttgcttttagaaccgcatga
aaacgaattcaccctatcagaaaccatagtcaattctaaacaaaacaaaa
caaaactaaagatgaagacaacaatcgcaaaaacatttaagaaatatgta
taattaatggagatggtctcttcacttctgatgtatgccagcatcataat
cttccagttaaaccgtccttttttttcatagaacatatgtcactaaaggc
tgatcagaagacgaagtatgacacagttaagtactgatgggttatggatg
tctttattttttaccgatcctagtactacattctacttgagatatttttt
ttctccgagagctgttaagtatttctgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_13175109_13176247
seq2: B6Ng01-304H02.b_42_1173 (reverse)

seq1  AAAACT-CATACTTC-TGTGAGTGACATTAATGAAGCCT-GCTCTTTGTT  47
      |||||| |||||||| ||||||||||||  ||| || || ||||||  ||
seq2  AAAACTCCATACTTCTTGTGAGTGACAT--ATGGAGGCTGGCTCTTGTTT  48

seq1  TGATTCGTGTG-TTTTATGAGTTCAAGCAGGCATGTACAAAATGCACCCT  96
       |||||||||| ||||||||| || |||| ||||||||||||||||  ||
seq2  GGATTCGTGTGTTTTTATGAG-TCCAGCA-GCATGTACAAAATGCA--CT  94

seq1  GCTCTTTGATTTATTTTTCCTAATTCTGGGACATGCTGTCCCCTTAAAAC  146
      |||| |||||||||||||||| ||||||||||||||||||||  | ||||
seq2  GCTC-TTGATTTATTTTTCCT-ATTCTGGGACATGCTGTCCC--TTAAAC  140

seq1  AAGTAAAAACTCTTGCGTGGATTTGTTTTATTTATTTTTTTGGCAGCCAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAAACTCTTGCGTGGATTTGTTTTATTTATTTTTTTGGCAGCCAG  190

seq1  CATCAAAAATGAAACACGAACAAATCATCCCTGTTGCTAGCATGTCCTCC  246
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CATCAAAAATGAAACACGAACAAATCAT-CCTGTTGCTAGCATGTCCTCC  239

seq1  TCACAAACCGTTTCTTGAGGAAGCCTCCATTGGAATCTCTTACCCTGAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAACCGTTTCTTGAGGAAGCCTCCATTGGAATCTCTTACCCTGAGA  289

seq1  TGGGAAAAGCTACATATCCCAAACTGTGAATTTTATTTGTATGTCGACAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAAGCTACATATCCCAAACTGTGAATTTTATTTGTATGTCGACAA  339

seq1  AAAGCCAAAAGTTGGGAGATGTTATTTTGTGAGCTGTCATATGTTTCCTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAAAAGTTGGGAGATGTTATTTTGTGAGCTGTCATATGTTTCCTG  389

seq1  AACTTTTTAGAATAGAAGGGAGCCATGGCAGGGCCCTTTCCCTCGCTCCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTAGAATAGAAGGGAGCCATGGCAGGGCCCTTTCCCTCGCTCCT  439

seq1  GTAACAAAGGCATGTCCCAGTTTATTTAAAAAAAAAAAAAATCATACACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAAGGCATGTCCCAGTTTATTTAAAAAAAAAAAAAATCATACACA  489

seq1  ACAATGCTGCTTGCCAGGTTTCAGAGTCCTAATGAAAATTTGGTCCAGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCTGCTTGCCAGGTTTCAGAGTCCTAATGAAAATTTGGTCCAGAG  539

seq1  CACAAAAATTTTCTGGAAAAATGCCTGAAATTTCCCTGTCGCAGATGTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAATTTTCTGGAAAAATGCCTGAAATTTCCCTGTCGCAGATGTTT  589

seq1  CGACAGAAGGTGCTTGCATGCCATTCGTTAATACTGCGCCATACGGGACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGAAGGTGCTTGCATGCCATTCGTTAATACTGCGCCATACGGGACT  639

seq1  CAGTGTGGCCACCGCAATATAACCAGTAAGTAACACACGCAGCGTGCACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGGCCACCGCAATATAACCAGTAAGTAACACACGCAGCGTGCACA  689

seq1  CAGCTCCGCCAAAGTCCCCGTCTGTTGTGTGGGACTCGTATCCCATGGAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCGCCAAAGTCCCCGTCTGTTGTGTGGGACTCGTATCCCATGGAT  739

seq1  TGAGACGTACCTTGATGAAACTGCATTGTCATGGAATGATAATATTTGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACGTACCTTGATGAAACTGCATTGTCATGGAATGATAATATTTGCA  789

seq1  GATCACCATGCACAGAAGCACACTATGGAGAACGTGGGAGGTCCGTTGGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACCATGCACAGAAGCACACTATGGAGAACGTGGGAGGTCCGTTGGC  839

seq1  TTCAGCGCACTTTTTGGCAGAGGAACTGACGAGCTGAGCTTGCATTTGAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCGCACTTTTTGGCAGAGGAACTGACGAGCTGAGCTTGCATTTGAT  889

seq1  TCTTAGTGTTTGTGGTCCTCTTCGCCTCCCCCGCCCCTCATCTGCCAAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTGTTTGTGGTCCTCTTCGCCTCCCCCGCCCCTCATCTGCCAAAC  939

seq1  TACAGGAATAACTCTGTGCATAGAAAATTGCTTACCGGAGAATTTTTTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAATAACTCTGTGCATAGAAAATTGCTTACCGGAGAATTTTTTTT  989

seq1  GGGGGGGGGGGTGGTGGTGATATAAATAAAAGGTCACTTGGAAGTTGTTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGGTGGTGGTGATATAAATAAAAGGTCACTTGGAAGTTGTTC  1039

seq1  ATAGGTGTGGAAGGCACATATAGTCTGCTTTTGTTTGTTAATGAGTTCCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGTGGAAGGCACATATAGTCTGCTTTTGTTTGTTAATGAGTTCCA  1089

seq1  AAAATAGAGAAGTGACTTCCTGTCCATTCTCTTTGAAGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAGAAGTGACTTCCTGTCCATTCTCTTTGAAGAATTC  1132


seq1: chr4_13030411_13031546
seq2: B6Ng01-304H02.g_66_1194

seq1  GAATTCTGCAGGCAATGTAATTAGCATGGGGGCACTGTGGAATCTTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGGCAATGTAATTAGCATGGGGGCACTGTGGAATCTTTACA  50

seq1  GAACTGCCAATTAGCACTTAAGAAATAATTTGCTTCTGGTACAAAGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCCAATTAGCACTTAAGAAATAATTTGCTTCTGGTACAAAGACAA  100

seq1  AGTGACAGACAGTGCACTTGAAAAGCCCTAACTGCATTTGAGAGTCTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGACAGTGCACTTGAAAAGCCCTAACTGCATTTGAGAGTCTTGA  150

seq1  GGATATTTCTTTTTTTATTACAAATGAAATATTTTCAGGTTCGCAATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTCTTTTTTTATTACAAATGAAATATTTTCAGGTTCGCAATGCT  200

seq1  GGCCATACTAATTTGTATGAATCCAACCCAGTCAATTGCATATCTTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATACTAATTTGTATGAATCCAACCCAGTCAATTGCATATCTTTAGG  250

seq1  TGGAATTTAATTAATTAAATAACTAATTCTTTTTTTTTTCAAATTATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTAATTAATTAAATAACTAATTCTTTTTTTTTTCAAATTATTTT  300

seq1  AAAAATCCAATATATTAATGTGTCTTGATTTTCACAATATGTATAAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCAATATATTAATGTGTCTTGATTTTCACAATATGTATAAGACA  350

seq1  GAGTTTACCCTTTTTTTGGTACGTATCTTAGGGGCTATTTTACTTTGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTACCCTTTTTTTGGTACGTATCTTAGGGGCTATTTTACTTTGTCC  400

seq1  AGGAAGTCCTAAGATTTGAGTCATTCATACTCATAACATCCTGATACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTCCTAAGATTTGAGTCATTCATACTCATAACATCCTGATACTCA  450

seq1  GTGCAAGATAGAATATGGAAGTGTGGTCAGTTACTGTCACCTTTGACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGATAGAATATGGAAGTGTGGTCAGTTACTGTCACCTTTGACCTT  500

seq1  CGTGTATCATTGGTTCTATTGACTGAAATGTAGAAATAATGAATGGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTATCATTGGTTCTATTGACTGAAATGTAGAAATAATGAATGGAAGG  550

seq1  GCTGCATCATTATTTGATGTTCTCAAGAAAGGAGGTGTTAGGTCTCAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATCATTATTTGATGTTCTCAAGAAAGGAGGTGTTAGGTCTCAAGA  600

seq1  AGAGGCCTCTTTGATGATTCCTGCCATGGAGGTAGCTCAGTCTGGCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCTCTTTGATGATTCCTGCCATGGAGGTAGCTCAGTCTGGCTGTG  650

seq1  CTTGTTGGTTTGAAAACAATGCTGATAAAATAGAGTCCTGGACTGGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGGTTTGAAAACAATGCTGATAAAATAGAGTCCTGGACTGGCTTT  700

seq1  CACCTTAATGTTTATGACTTTGCTTAGGGATGGCTATATTCATCCAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTAATGTTTATGACTTTGCTTAGGGATGGCTATATTCATCCAAAGG  750

seq1  CCAATTCTGCCATTTGGAAATATATGCTACTTGCTTTTAGAACCGCATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCTGCCATTTGGAAATATATGCTACTTGCTTTTAGAACCGCATGA  800

seq1  AAACGAATTCACCCTATCAGAAACCATAGTCAATTCTAAACAAAACAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAATTCACCCTATCAGAAACCATAGTCAATTCTAAACAAAACAAAA  850

seq1  CAAAACTAAAGATGAAGACAACAATCGCAAAAACATTTAAGAAATATGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTAAAGATGAAGACAACAATCGCAAAAACATTTAAGAAATATGTA  900

seq1  TAATTAATGGAGATGGTCTCTTCACTTCTGATGTATGCCAGCATCATAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATGGAGATGGTCTCTTCACTTCTGATGTATGCCAGCATCATAAT  950

seq1  CTTCCAGTTAAACCGTCCTTTTTTTTCATAG-ACATATGTCACTAAAGGC  999
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTCCAGTTAAACCGTCCTTTTTTTTCATAGAACATATGTCACTAAAGGC  1000

seq1  TGATCAGAAGACGGAAGGTTATGACACAGTTAAGGTAACTGATGGGTTTA  1049
      |||||||||||| ||||  |||||||||||||||   |||||||||||  
seq2  TGATCAGAAGAC-GAAG--TATGACACAGTTAAG--TACTGATGGGTTAT  1045

seq1  TGATGTCTTTATTTTTTAACGAT-CTAGTACTACATTCTACTTGAAGGAT  1098
       ||||||||||||||||| |||| |||||||||||||||||||||  |||
seq2  GGATGTCTTTATTTTTTACCGATCCTAGTACTACATTCTACTTGA--GAT  1093

seq1  ATTTTTTTCCTCCCAAGAGTCTG-TAAGTATTTCCTGAT  1136
      |||||||| || || |||| ||| ||||||||| |||||
seq2  ATTTTTTTTCT-CCGAGAG-CTGTTAAGTATTT-CTGAT  1129


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