BAC Information

Click to search

BAC

Clone NameB6Ng01-304H11
Chromosome4 (Build37)
Map Location 145,888,346 - 145,889,272
singlet/doubletsinglet
Overlap geneRex2
Upstream geneTnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791
Downstream geneLOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304H11.bB6Ng01-304H11.g
ACCGA098016GA098017
length1,1311,163
definitionB6Ng01-304H11.b B6Ng01-304H11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatacaggagagaaaccttacaaatgcagtgaatgtgggaaatgc
tttactgacaaactcactctgagaaggcatcagagaattcatactggaga
gaaaccttataaatgtagtgaatgtaacaaatgctttactgagaaagtta
atctgagaaggcatcagagaactcatacaggggagaattcttacaaatgt
attgaatgtgacaaatgttttgcccagaaatcctatcttgttcataatca
cagaaatcatacattaaagaagccttacaaatgcagtcaatgtgacaaat
gattttcccacaaacttagtctgagaatgcaccagagaattcatacagta
gagaaaacttacaaaaatgcagtgaatgtgataaatgctttactaataaa
ggcagactgagaattaatcagataatttatacatttaaaaaaaccttaca
agtattttgtatgtgataaatgcagtacccacaacatcagtctgacaaat
caacagatatttcaaacagtagagcaacattataaatgaaatgaatgaga
taatcctttaacaagaaatatcatcttaaaattcactggagaattcttcc
aaaagggaaacttttcaaatacattgacggtttgaatcctttattttggc
caatctcttagaatgtaacagataatttatacaggcaagaatcttaacaa
atataatatatgctgaaatatctttgacttcatttcagtgcagaaaaaat
atgtaaaaaaattttttatgggaaaaatagttctcctggggaaatgtggc
atatgttttacacgggtaatattcttttcaacagtcagtgctctaaacta
gagaattattatgaatctgaaaacttttgaaaaccttcatgcaatcttca
aatctaatgtcaactattatgctggcagtaactctgaatatatgataatg
aagaaacattttcattaaacttttacttgttcaccctcaaatattatatg
atgaagtcagtgtgaaagccagaagatatgatgttgtgcaacaatttcat
ggagatagaaatgatccattcagaggaactaaagaggtgtactattcggc
cttcaaatgtctaattaaactggcagcattt
gaattcacactgaagccaaaccctataaaagtaatcaatccagtaaagcc
ttttcatgtcactatcacaaaaatgtcataaaagaatttatattgaagag
aaatcctacaaatataagcaatgtgcttagcatcgggtgcatctgtggac
agctagaagtgtctttacagttaggttctagacccagtgaggacattcct
catatgtaggcaacagcactgcccttgtatctgttgccagggcaccaatt
ccctttcacatgcttcccagcctcatggactgaataaaagagtgttccct
cgtcgcacagacccttctcttcttctgacctctcacccctctcagacact
gcttctgtcaataaaacctcccacatgacacctgaagcttggtgtgatat
gtccaggattttgcctgcctgttctaacaaatatgaagaaatgatttctg
ttacccttgtgactcatgcagtattgtttctggtacataaacaaattcat
gataaagaagaattctgtaagtaagcttttagatgccttaacaggaatga
atgcattcacaagtaaatgtaggaaagaactcacacaagagaaaaacact
attcatgtgaccatttgatgaggactctagtttcaaaaaaaaaaaaaagg
tcttgctccttctccttttcatcatggctttgaaggtagaatatggttta
caatgtgcactcaaatgcagtgaagttgatcattaatagttgtgggagtt
ttattttgaaatatttgaagttgattttaaagtttaatgtatatgaggca
aattcattcccaaaactttattaaggccattgttatactccttctgtgga
tcctggtcatcttcttttgcattttcacgtggtgatcttccccccacccc
cacccccgcaatgtataacatggatgctgatcatctctgtgatccattgt
tatttaaatatcagactgtgtatactcatactttccaagtaagtgtttgt
gagggtttgtgtgttgttcctagtttttgtttttcagattcaccaaaatt
cctagagatgatgttggttatcaggtggatcgatgtcagtcataggcaag
gctacatttgaactcttatcatgtgtagcctccgataatgtccaatgggt
agaatagtgtaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145888346_145889272
seq2: B6Ng01-304H11.b_259_1175

seq1  ATGTTTTGCCCAGAAATCCTATCTTGTTTTTAATCACAGAAATCATACAT  50
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  ATGTTTTGCCCAGAAATCCTATCTTGTTCATAATCACAGAAATCATACAT  50

seq1  TAAAGAAGCCTTACAAATGCAGTCAATGTGACAAATGATTTTCCCACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGCCTTACAAATGCAGTCAATGTGACAAATGATTTTCCCACAAA  100

seq1  CTTAGTCTGAGAATGCATCAGAGAATTCATACAGTAGAGAAAACTTACAA  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTAGTCTGAGAATGCACCAGAGAATTCATACAGTAGAGAAAACTTACAA  150

seq1  AAATGCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAGAAT  200

seq1  TAATCAGATAATTTATACATTTAAAAAAACCCTTACAAGTATTTTGTATG  250
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAATCAGATAATTTATACATTTAAAAAAA-CCTTACAAGTATTTTGTATG  249

seq1  TGATAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAGATATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAGATATTTC  299

seq1  AAACAGTAGAGCAACATTATAAATGAAATGAATGAGATAGTCCTTTAACA  350
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAACAGTAGAGCAACATTATAAATGAAATGAATGAGATAATCCTTTAACA  349

seq1  AGAAATATCATCTTAAAATTCACTGGAGAATTCTTCCAAAAGGGAAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATCATCTTAAAATTCACTGGAGAATTCTTCCAAAAGGGAAACTT  399

seq1  TTCAAATACATTGACGGTTTGAATCCTTTATTTTGGCCTATCTCTTAGAA  450
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCAAATACATTGACGGTTTGAATCCTTTATTTTGGCCAATCTCTTAGAA  449

seq1  TGTAATAGATAATTTATACAGGCAAGAATCTTAACAAATATAATATATGC  500
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGATAATTTATACAGGCAAGAATCTTAACAAATATAATATATGC  499

seq1  TGAAATATCTTTGACTTCATTTCAGTGCAGAAAAAATATGTAAAAAAAAT  550
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGAAATATCTTTGACTTCATTTCAGTGCAGAAAAAATATGTAAAAAAATT  549

seq1  TTTTATGGGAAAAATAGTTCTCCTGGGGAAATGTGGCATATGTTTTACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGGGAAAAATAGTTCTCCTGGGGAAATGTGGCATATGTTTTACAC  599

seq1  GGGTAATATTCTTTTCAACAGTCAGTGCTCTAAACTAGAGAATTATTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATATTCTTTTCAACAGTCAGTGCTCTAAACTAGAGAATTATTATG  649

seq1  AATCTGAAAACTTTTGAAAACCTTCATGCAATGTTCAAATCTTAGATAAT  700
      |||||||||||||||||||||||||||||||| ||||||||     ||||
seq2  AATCTGAAAACTTTTGAAAACCTTCATGCAATCTTCAAATC-----TAAT  694

seq1  GTCAACTATTATGCTGGCAGTAACTCTGAATATATGATAGTGAAGAAACA  750
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTCAACTATTATGCTGGCAGTAACTCTGAATATATGATAATGAAGAAACA  744

seq1  TTTTCATTAAACTTTTACTTGTTCACCCTCAAATATTATATGATGAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTAAACTTTTACTTGTTCACCCTCAAATATTATATGATGAAGTC  794

seq1  AGGTGTGAAAGCCAGAAGAATATGATGTTGTGCAACAA-TTCATGGAGAT  849
      | |||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  A-GTGTGAAAGCCAGAAG-ATATGATGTTGTGCAACAATTTCATGGAGAT  842

seq1  AGAAATGATCCATTCCAAAAGGAAACTAAATAAAGTGTACTAT--CGCCT  897
      |||||||||||||||  | ||| |||||||  | |||||||||   ||||
seq2  AGAAATGATCCATTC--AGAGG-AACTAAA-GAGGTGTACTATTCGGCCT  888

seq1  TCAAAATGTCTAATAAAACTGGCAGCATTT  927
      || ||||||||||| |||||||||||||||
seq2  TC-AAATGTCTAATTAAACTGGCAGCATTT  917