BAC Information

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BAC

Clone NameB6Ng01-305I05
Chromosome4 (Build37)
Map Location 62,943,947 - 63,106,521
singlet/doubletdoublet
Overlap geneCol27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn
Upstream geneSlc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3, Zfp618, Ambp, Kif12
Downstream geneAtp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305I05.bB6Ng01-305I05.g
ACCGA098785GA098786
length1,1081,020
definitionB6Ng01-305I05.b B6Ng01-305I05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,105,414 - 63,106,521)(62,943,947 - 62,944,962)
sequence
gaattcaaggcctgcctgggccacttagtgagactgtgccagcggtgggg
ggtggaacagttgctgaacaggtgtgagggagggcctgggtgcaatgctc
agtactttaaaaaaaaaaaaaaaaagagccgggtgtggtggtgcacgcct
ttaatcccagcactcgggaggcagaggcaggcggatttctgagttcgagg
ccagcctggtctacagagtgagttccaggacagctagggctacacagaga
aaccctgtctcaaaaatcccaaaaaaaaaaaaaccaaacaaacaaacaaa
aaagggcaattaagtaatgaagttaatttcattttatacttttaagtaat
ttctgactaatacagttattttattaaaaaaaaactaatatatttatttt
gaggggtatctaagatttagggacaaatcacgcatccagtatagggttct
accactgagcctccctccatctttattagcaagccacagattagaacata
agagacacgtgttctagttaatgacccagtgaggtttgcagtattcactg
gagcctgtaattcacatccaaggtcacagttctgtgggttttcttagatg
agtaacatgacgtgccctcccacgtagctccccctccctaaaaaccccat
gccccacttagcctccctccccatcagcctctctgtttcccagttcccaa
gcccctctgatcatcccaccgtttctatgtttctgtctggctccgtgttt
ctctctgcccacagcatcacagagttatatgcactctcttctgggccttt
ccacataagccttttcctttgccaagttatcttctgacctatttattgag
acacagcatcacgcatcgctgtgagaagcgttacatgcattaccacctgc
catgaacagcctgggggagtaacgcttccatctgcacagctgtgctgggg
accttggcagtggtttccctgtgctgttgttactgaatggaaccaaggat
gcttgtaagcaatagttactctgcagtaaacattggaggcccattcacat
aacagttattccacatgaacttcttatggctatgctcacaaatcctggct
gcagtttt
gaattcttgcaggagctgcccactttgctcagtgttgtcagaggggaaca
accgaggctgaagggtggaaggtctagcctgggtcctacagctaggacgt
agggttggctaccagagctaaggtgcacattctttcccggcttccagctt
tgcagaacacctacctgccccacctgcaccccccagccatggtgttgact
ggtagtccgtggggcttcagatttcagtttctctttaacattcagaaatg
atggagcacccaagaatctttgctagtgtgggttacatctgattgatatg
aataattagaacaagcacactctaggcatgtttgtttattcagtggaagt
taattataagtctgttcctcataagcagaatcttgtcttttgtctgaaat
cactctattttctgaatcgggacaagcgagtgggacaaaatcggcttggt
gttcccatttttgccaagttctttaatgtcactctggtgaagtcagctgg
cttcctacttctgtgtctgcatcagtctgtgatggcgccatgagtcacaa
agtctctgaacagtccactgcatgcatcagagagagtgaggaaggcagat
ggcagacatcccagagctactgtgaagcaaacttccccacctggctctcc
taaaagggtcccggggatagcagagttctctgaccatgtttggaagacca
caaacaggaagtctgaattaccctgagcccagatgctctgcccaacctct
tccttacctctcccatagaaagcaggggccattgtccctgtttaagacag
atcagtccaagggacaaggaagccatgctgaagccacctagctgtagagc
atcttgaattcctttgtctggatgcctggtgacactggatctctacatcg
ctgtcccctccagaatgttgctagattcctaagatttctccagggccctt
cagcattgtccctggcagcccccttcatgttgtgtctctctgttgcaggg
tcagcctttgaaaggaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_63105414_63106521
seq2: B6Ng01-305I05.b_45_1152 (reverse)

seq1  AAAACTGCAGCCAGAATTTGTGAAGCATTAGCAT-AGAAGTTCATGTGGA  49
      |||||||||||||| ||||||| |||||   ||| |||||||||||||||
seq2  AAAACTGCAGCCAGGATTTGTG-AGCATAGCCATAAGAAGTTCATGTGGA  49

seq1  AAATAAAACTG-TATGTGAAT-GGCCTCCAATGTTTACTGCAGAGTAACT  97
          | ||||| ||||||||| ||||||||||||||||||||||||||||
seq2  ----ATAACTGTTATGTGAATGGGCCTCCAATGTTTACTGCAGAGTAACT  95

seq1  ATTGCTTACAGCAATCCTTGG-TCCATTCAGTAACAAACAGCACAGGG-A  145
      ||||||||||   |||||||| ||||||||||||| |||||||||||| |
seq2  ATTGCTTACAAGCATCCTTGGTTCCATTCAGTAAC-AACAGCACAGGGAA  144

seq1  ACCACTGCCAAGGTCCCCAGCACAGCTGTGCAGATGGAAGCGTTACTCCC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGCCAAGGTCCCCAGCACAGCTGTGCAGATGGAAGCGTTACTCCC  194

seq1  CCAGGCTGGTCATGGCAGGTGGTAATGCATGTAACGC-TCTCACAGCGAT  244
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  CCAGGCTGTTCATGGCAGGTGGTAATGCATGTAACGCTTCTCACAGCGAT  244

seq1  GCGTGATGCTGTGTCTCAATAAATAGGTCAGAAGATAACTTGGCAAAGGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGATGCTGTGTCTCAATAAATAGGTCAGAAGATAACTTGGCAAAGGA  294

seq1  AAAGGCTTATGTGGAAAGGCCCAGAAGAGAGTGCATATAACTCTGTGATG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTTATGTGGAAAGGCCCAGAAGAGAGTGCATATAACTCTGTGATG  344

seq1  CTGTGGGCAGAGAGAAACACGGAGCCAGACAGAAACATAGAAACGGTGGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGCAGAGAGAAACACGGAGCCAGACAGAAACATAGAAACGGTGGG  394

seq1  ATGATCAGAGGGGCTTGGGAACTGGGAAACAGAGAGGCTGATGGGGAGGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCAGAGGGGCTTGGGAACTGGGAAACAGAGAGGCTGATGGGGAGGG  444

seq1  AGGCTAAGTGGGGCATGGGGTTTTTAGGGAGGGGGAGCTACGTGGGAGGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAGTGGGGCATGGGGTTTTTAGGGAGGGGGAGCTACGTGGGAGGG  494

seq1  CACGTCATGTTACTCATCTAAGAAAACCCACAGAACTGTGACCTTGGATG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCATGTTACTCATCTAAGAAAACCCACAGAACTGTGACCTTGGATG  544

seq1  TGAATTACAGGCTCCAGTGAATACTGCAAACCTCACTGGGTCATTAACTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTACAGGCTCCAGTGAATACTGCAAACCTCACTGGGTCATTAACTA  594

seq1  GAACACGTGTCTCTTATGTTCTAATCTGTGGCTTGCTAATAAAGATGGAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACGTGTCTCTTATGTTCTAATCTGTGGCTTGCTAATAAAGATGGAG  644

seq1  GGAGGCTCAGTGGTAGAACCCTATACTGGATGCGTGATTTGTCCCTAAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTCAGTGGTAGAACCCTATACTGGATGCGTGATTTGTCCCTAAAT  694

seq1  CTTAGATACCCCTCAAAATAAATATATTAGTTTTTTTTTAATAAAATAAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATACCCCTCAAAATAAATATATTAGTTTTTTTTTAATAAAATAAC  744

seq1  TGTATTAGTCAGAAATTACTTAAAAGTATAAAATGAAATTAACTTCATTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAGTCAGAAATTACTTAAAAGTATAAAATGAAATTAACTTCATTA  794

seq1  CTTAATTGCCCTTTTTTGTTTGTTTGTTTGGTTTTTTTTTTTTTGGGATT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTGCCCTTTTTTGTTTGTTTGTTTGGTTTTTTTTTTTTTGGGATT  844

seq1  TTTGAGACAGGGTTTCTCTGTGTAGCCCTAGCTGTCCTGGAACTCACTCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACAGGGTTTCTCTGTGTAGCCCTAGCTGTCCTGGAACTCACTCT  894

seq1  GTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCG  944

seq1  AGTGCTGGGATTAAAGGCGTGCACCACCACACCCGGCTCTTTTTTTTTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGATTAAAGGCGTGCACCACCACACCCGGCTCTTTTTTTTTTT  994

seq1  TTTTTTAAAGTACTGAGCATTGCACCCAGGCCCTCCCTCACACCTGTTCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAGTACTGAGCATTGCACCCAGGCCCTCCCTCACACCTGTTCA  1044

seq1  GCAACTGTTCCACCCCCCACCGCTGGCACAGTCTCACTAAGTGGCCCAGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGTTCCACCCCCCACCGCTGGCACAGTCTCACTAAGTGGCCCAGG  1094

seq1  CAGGCCTTGAATTC  1108
      ||||||||||||||
seq2  CAGGCCTTGAATTC  1108

seq1: chr4_62943947_62944962
seq2: B6Ng01-305I05.g_70_1089

seq1  GAATTCTTGCAGGAGCTGCCCACTTTGCTCAGTGTTGTCAGAGGGGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCAGGAGCTGCCCACTTTGCTCAGTGTTGTCAGAGGGGAACA  50

seq1  ACCGAGGCTGAAGGGTGGAAGGTCTAGCCTGGGTCCTACAGCTAGGACGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGGCTGAAGGGTGGAAGGTCTAGCCTGGGTCCTACAGCTAGGACGT  100

seq1  AGGGTTGGCTACCAGAGCTAAGGTGCACATTCTTTCCCGGCTTCCAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGGCTACCAGAGCTAAGGTGCACATTCTTTCCCGGCTTCCAGCTT  150

seq1  TGCAGAACACCTACCTGCCCCACCTGCACCCCCCAGCCATGGTGTTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAACACCTACCTGCCCCACCTGCACCCCCCAGCCATGGTGTTGACT  200

seq1  GGTAGTCCGTGGGGCTTCAGATTTCAGTTTCTCTTTAACATTCAGAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTCCGTGGGGCTTCAGATTTCAGTTTCTCTTTAACATTCAGAAATG  250

seq1  ATGGAGCACCCAAGAATCTTTGCTAGTGTGGGTTACATCTGATTGATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCACCCAAGAATCTTTGCTAGTGTGGGTTACATCTGATTGATATG  300

seq1  AATAATTAGAACAAGCACACTCTAGGCATGTTTGTTTATTCAGTGGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAGAACAAGCACACTCTAGGCATGTTTGTTTATTCAGTGGAAGT  350

seq1  TAATTATAAGTCTGTTCCTCATAAGCAGAATCTTGTCTTTTGTCTGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATAAGTCTGTTCCTCATAAGCAGAATCTTGTCTTTTGTCTGAAAT  400

seq1  CACTCTATTTTCTGAATCGGGACAAGCGAGTGGGACAAAATCGGCTTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTATTTTCTGAATCGGGACAAGCGAGTGGGACAAAATCGGCTTGGT  450

seq1  GTTCCCATTTTTGCCAAGTTCTTTAATGTCACTCTGGTGAAGTCAGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCATTTTTGCCAAGTTCTTTAATGTCACTCTGGTGAAGTCAGCTGG  500

seq1  CTTCCTACTTCTGTGTCTGCATCAGTCTGTGATGGCGCCATGAGTCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTACTTCTGTGTCTGCATCAGTCTGTGATGGCGCCATGAGTCACAA  550

seq1  AGTCTCTGAACAGTCCACTGCATGCATCAGAGAGAGTGAGGAAGGCAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGAACAGTCCACTGCATGCATCAGAGAGAGTGAGGAAGGCAGAT  600

seq1  GGCAGACATCCCAGAGCTACTGTGAAGCAAACTTCCCCACCTGGCTCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACATCCCAGAGCTACTGTGAAGCAAACTTCCCCACCTGGCTCTCC  650

seq1  TAAAAGGGTCCCGGGGATAGCAGAGTTCTCTGACCATGTTTGGAAGACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGGTCCCGGGGATAGCAGAGTTCTCTGACCATGTTTGGAAGACCA  700

seq1  CAAACAGGAAGTCTGAATTACCCTGAGCCCAGATGCTCTGCCCAACCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGGAAGTCTGAATTACCCTGAGCCCAGATGCTCTGCCCAACCTCT  750

seq1  TCCTTACCTCTCCCATAGAAAGCAGGGGCCATTGTCCCTGTTTAAGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACCTCTCCCATAGAAAGCAGGGGCCATTGTCCCTGTTTAAGACAG  800

seq1  ATCAGTCCAAGGGACAAGGAAGCCATGCTGAAGCCACCTAGCTGTAGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCCAAGGGACAAGGAAGCCATGCTGAAGCCACCTAGCTGTAGAGC  850

seq1  ATCTTTGAATTCCTTTGTCTGGATGCCTGGTGACACTGGATCTCTACATC  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATC-TTGAATTCCTTTGTCTGGATGCCTGGTGACACTGGATCTCTACATC  899

seq1  GCTGTCCCCTCCAGAATG-TGCTAGATTCCTAAGA-TTCTCCAGGGCCCC  948
      |||||||||||||||||| |||||||||||||||| ||||||||||||| 
seq2  GCTGTCCCCTCCAGAATGTTGCTAGATTCCTAAGATTTCTCCAGGGCCCT  949

seq1  TCAGCATTGTCCCTGGCAGCCCCCTTCATG-TGTGTCTCTCTGTTGCAGG  997
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCAGCATTGTCCCTGGCAGCCCCCTTCATGTTGTGTCTCTCTGTTGCAGG  999

seq1  GTCAGCC--TGGAAGGAAAGG  1016
      |||||||  || |||||||||
seq2  GTCAGCCTTTGAAAGGAAAGG  1020