BAC Information

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BAC

Clone NameB6Ng01-305I19
Chromosome4 (Build37)
Map Location 118,814,665 - 118,983,744
singlet/doubletdoublet
Overlap geneZfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih
Upstream geneJmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1
Downstream gene1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305I19.bB6Ng01-305I19.g
ACCGA098813GA098814
length1,0151,217
definitionB6Ng01-305I19.b B6Ng01-305I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,814,665 - 118,815,406)(118,982,561 - 118,983,744)
sequence
gaattcactatatagaacaggctggcttggaactcattgagatcagcctg
tttctgcctctgtagtgctgggattaaagatgaatccaaaacaaaacaaa
aacaaaacaaaacaaaacaaaacagaatgagagtgatggagtgagcaagt
gcatatgaagatgaggagaggagatggtagaagcagagctacacactgag
accctgtctcagacaaaataaagaaagaaagaagctattttaaaatctta
ctttatgtagataagcgtctcgcctgcgtgtatagtctatgcagcacgtg
tggcccggtgccggtggaagccagaagagggcgctgaatcccctagatct
ggggttacggacgcttgtgagctatcacgtgagagctcagactggaaatg
tagaagagcagccagagtctgagctaaggagccatctctatagtatccct
cttctctttttaaacctactccatgtagtgctgcctgtgtgcgcatggat
gtgggaccgtgtactagagcatggctagccctttcagggtctgccgcgct
ccctgaaggaaatcaaccccaagagccatcagttggcatcctgcactgga
tcggctgctctgcggatagggagggcggtacttcgtgagccccacaccgc
cgcgtgctgggatttttggatctggcgcatgtcttgtgcgtgcatatgag
ctcatctgtgcaacaacattacattcagcaaacaatgtctgactggagat
gtctacaattcctggcctttacaatttttccacgttctctttgtcagtga
ttacctgagtcttaggaaaagaagtgtgatagagatttctcatttagagc
ttagtagtccacagcctcttaatctatgagtgttggccagatgtaagtgg
gcctttgttaatccccatctcctacaaaaaagagcttttctgataagggt
tgagagatgcactagtctatgaatgcaaaggttaagaccacacggagcag
tttgttaatttgcct
gaattcctccttgggatcttacctatggtccctggcccagttccaatgtc
ccttctgtggctccctctccgtaagctggatcccttcagtgttcttctaa
cttgcatgatcccattgtgggctgtggcctctcattgttcctcttctcct
tgatctgttatattttactctccgtcaggacacgctccttacatcagcct
gatcttggacctttccataggagatgaaaggttccatgaggcaccgggta
agtgcctgagtgcatttcatgatcttgtgctttgttttctagaatgttcc
cacaggccccaacaataagcccaaactgccagtggtgatctcacagtgtg
gggaaatgtaatctagacaagacggaaccaggtacgtgtccttttcttcc
tggctcggaaaaggagtcatggcttgagggagactttctacccaaagatg
tggactgagtccatttcctctgcatgtgagctgggcgcaaagcactcctg
cagaacaagtttcctcaactgtcaagagagggtgtcaaccttagggtcat
tgtgacaagcaaaaaagggtggatattgggaatattcccctttttactgg
ttcatacagtgtccccctgaaaaggaaccccttgcattgggaccaacctg
gggaaccaggagatatgtgctatgccaccctcagaactgacactggcgtc
cagccttggaggtgtgagcctcatatgccactttttcacttttatagccc
ttcctcctagtacatgctactggctgctttgcactggggctttctggaaa
agaatttgagaggcactcccaggagagacgacacgtttcttagagggtga
aagctagtaatgcaagtgacttgtgtgctttagcactcctaggggagcat
gggtcagtcccaccgctggaaggaggccctgggcattgtgtttgccttga
aatttttttcaaccttacaaagatgttggaaaatgttgattagtcacccc
acaagtatgcagttagggtgaccagttgattgaacatttgtgggacttgc
tgtctcctctccttcgtttcccatgccacatctctctcctccactggtct
tccttaaactttcttggcccctcggaacctttcctacttatttccaaaaa
cttaaggacctcttgaatactctcaccccctaagacacgttcaccatgga
ccgtgtgctaaacagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_118814665_118815406
seq2: B6Ng01-305I19.b_46_787

seq1  GAATTCACTATATAGAACAGGCTGGCTTGGAACTCATTGAGATCAGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATATAGAACAGGCTGGCTTGGAACTCATTGAGATCAGCCTG  50

seq1  TTTCTGCCTCTGTAGTGCTGGGATTAAAGATGAATCCAAAACAAAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCCTCTGTAGTGCTGGGATTAAAGATGAATCCAAAACAAAACAAA  100

seq1  AACAAAACAAAACAAAACAAAACAGAATGAGAGTGATGGAGTGAGCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAACAAAACAAAACAGAATGAGAGTGATGGAGTGAGCAAGT  150

seq1  GCATATGAAGATGAGGAGAGGAGATGGTAGAAGCAGAGCTACACACTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGAAGATGAGGAGAGGAGATGGTAGAAGCAGAGCTACACACTGAG  200

seq1  ACCCTGTCTCAGACAAAATAAAGAAAGAAAGAAGCTATTTTAAAATCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCAGACAAAATAAAGAAAGAAAGAAGCTATTTTAAAATCTTA  250

seq1  CTTTATGTAGATAAGCGTCTCGCCTGCGTGTATAGTCTATGCAGCACGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTAGATAAGCGTCTCGCCTGCGTGTATAGTCTATGCAGCACGTG  300

seq1  TGGCCCGGTGCCGGTGGAAGCCAGAAGAGGGCGCTGAATCCCCTAGATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCGGTGCCGGTGGAAGCCAGAAGAGGGCGCTGAATCCCCTAGATCT  350

seq1  GGGGTTACGGACGCTTGTGAGCTATCACGTGAGAGCTCAGACTGGAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTACGGACGCTTGTGAGCTATCACGTGAGAGCTCAGACTGGAAATG  400

seq1  TAGAAGAGCAGCCAGAGTCTGAGCTAAGGAGCCATCTCTATAGTATCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAGCAGCCAGAGTCTGAGCTAAGGAGCCATCTCTATAGTATCCCT  450

seq1  CTTCTCTTTTTAAACCTACTCCATGTAGTGCTGCCTGTGTGCGCATGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTTTTAAACCTACTCCATGTAGTGCTGCCTGTGTGCGCATGGAT  500

seq1  GTGGGACCGTGTACTAGAGCATGGCTAGCCCTTTCAGGGTCTGCCGCGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACCGTGTACTAGAGCATGGCTAGCCCTTTCAGGGTCTGCCGCGCT  550

seq1  CCCTGAAGGAAATCAACCCCAAGAGCCATCAGTTGGCATCCTGCACTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAGGAAATCAACCCCAAGAGCCATCAGTTGGCATCCTGCACTGGA  600

seq1  TCGGCTGCTCTGCGGATAGGGAGGGCGGTACTTCGTGAGCCCCACACCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTGCTCTGCGGATAGGGAGGGCGGTACTTCGTGAGCCCCACACCGC  650

seq1  CGCGTGCTGGGATTTTTGGATCTGGCGCATGTCTTGTGCGTGCATATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTGCTGGGATTTTTGGATCTGGCGCATGTCTTGTGCGTGCATATGAG  700

seq1  CTCATCTGTGCAACAACATTACATTCAGCAAACAATGTCTGA  742
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGTGCAACAACATTACATTCAGCAAACAATGTCTGA  742

seq1: chr4_118982561_118983744
seq2: B6Ng01-305I19.g_69_1285 (reverse)

seq1  CACTGTTTAGCA----GCTCATTGTGAA-GTG-CTTA-GGGGTGA-AGTA  42
      ||||||||||||    |  ||| ||||| ||| |||| ||||||| ||||
seq2  CACTGTTTAGCACACGGTCCATGGTGAACGTGTCTTAGGGGGTGAGAGTA  50

seq1  -TCAAGAGGT-CTGTAGTTTT--GGAATAAGAAAGAAAAGTACTGAGGG-  87
       ||||||||| ||  ||||||  | |||||| | |||| || | ||||| 
seq2  TTCAAGAGGTCCTTAAGTTTTTGGAAATAAGTAGGAAAGGTTCCGAGGGG  100

seq1  --CAGGAAGTT--AAGAAGA-CAGTGGAGGAGAG-GATGTGGCATGGG-A  130
         || |||||  | ||||| ||||||||||||| ||||||||||||| |
seq2  CCAAGAAAGTTTAAGGAAGACCAGTGGAGGAGAGAGATGTGGCATGGGAA  150

seq1  ACGGAGG-GAGGAGACAGCAAGT-CCACAAATG-TCAATC-ACTGGTCAC  176
      ||| ||| ||||||||||||||| ||||||||| |||||| |||||||||
seq2  ACGAAGGAGAGGAGACAGCAAGTCCCACAAATGTTCAATCAACTGGTCAC  200

seq1  CCTAGCTGCATACTTGT-GGGTGACTAATCAACATTTTCCCAACATCTTT  225
      |||| |||||||||||| |||||||||||||||||||| |||||||||||
seq2  CCTAACTGCATACTTGTGGGGTGACTAATCAACATTTT-CCAACATCTTT  249

seq1  GTAGGTTTGAAAAAAATTTCAAGGCAAACACAATGCC--AGGCCTCCTTC  273
      ||| | |||||||||||||||||||||||||||||||   ||||||||||
seq2  GTAAGGTTGAAAAAAATTTCAAGGCAAACACAATGCCCAGGGCCTCCTTC  299

seq1  CAGCGGT-GGACTGACCCATGCT-CCCTA-GTGTGCT-AAGCACACAAGT  319
      ||||||| ||||||||||||||| ||||| | ||||| ||||||||||||
seq2  CAGCGGTGGGACTGACCCATGCTCCCCTAGGAGTGCTAAAGCACACAAGT  349

seq1  CACTTGCATTACTAGCTTTCA-CCTCTAAG-AACGTGTCGTCTCTCCTGG  367
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  CACTTGCATTACTAGCTTTCACCCTCTAAGAAACGTGTCGTCTCTCCTGG  399

seq1  GAGTGCCTCTC-AATTCTTTTCCAGAAAGCCCCAGTGCAAAGCAGCCAGT  416
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCTCTCAAATTCTTTTCCAGAAAGCCCCAGTGCAAAGCAGCCAGT  449

seq1  AGCATGTACTAGGAGGAAGGGCTATAAAAGTGAAAAAGTGGCATATGAGG  466
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTACTAGGAGGAAGGGCTATAAAAGTGAAAAAGTGGCATATGAGG  499

seq1  CTCACACCTCCAAGGCTGGACGCCAGTGTCAGTTCTGAGGGTGGCATAGC  516
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACCTCCAAGGCTGGACGCCAGTGTCAGTTCTGAGGGTGGCATAGC  549

seq1  ACATATCTCCTGGTTCCCCAGGTTGGTCCCAATGCAAGGGGTTCCTTTTC  566
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCTCCTGGTTCCCCAGGTTGGTCCCAATGCAAGGGGTTCCTTTTC  599

seq1  AGGGGGACACTGTATGAACCAGTAAAAAGGGGAATATTCCCAATATCCAC  616
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGACACTGTATGAACCAGTAAAAAGGGGAATATTCCCAATATCCAC  649

seq1  CCTTTTTTGCTTGTCACAATGACCCTAAGGTTGACACCCTCTCTTGACAG  666
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTGCTTGTCACAATGACCCTAAGGTTGACACCCTCTCTTGACAG  699

seq1  TTGAGGAAACTTGTTCTGCAGGAGTGCTTTGCGCCCAGCTCACATGCAGA  716
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAAACTTGTTCTGCAGGAGTGCTTTGCGCCCAGCTCACATGCAGA  749

seq1  GGAAATGGACTCAGTCCACATCTTTGGGTAGAAAGTCTCCCTCAAGCCAT  766
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGACTCAGTCCACATCTTTGGGTAGAAAGTCTCCCTCAAGCCAT  799

seq1  GACTCCTTTTCCGAGCCAGGAAGAAAAGGACACGTACCTGGTTCCGTCTT  816
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTTTTCCGAGCCAGGAAGAAAAGGACACGTACCTGGTTCCGTCTT  849

seq1  GTCTAGATTACATTTCCCCACACTGTGAGATCACCACTGGCAGTTTGGGC  866
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGATTACATTTCCCCACACTGTGAGATCACCACTGGCAGTTTGGGC  899

seq1  TTATTGTTGGGGCCTGTGGGAACATTCTAGAAAACAAAGCACAAGATCAT  916
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTGGGGCCTGTGGGAACATTCTAGAAAACAAAGCACAAGATCAT  949

seq1  GAAATGCACTCAGGCACTTACCCGGTGCCTCATGGAACCTTTCATCTCCT  966
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCACTCAGGCACTTACCCGGTGCCTCATGGAACCTTTCATCTCCT  999

seq1  ATGGAAAGGTCCAAGATCAGGCTGATGTAAGGAGCGTGTCCTGACGGAGA  1016
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGGTCCAAGATCAGGCTGATGTAAGGAGCGTGTCCTGACGGAGA  1049

seq1  GTAAAATATAACAGATCAAGGAGAAGAGGAACAATGAGAGGCCACAGCCC  1066
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATATAACAGATCAAGGAGAAGAGGAACAATGAGAGGCCACAGCCC  1099

seq1  ACAATGGGATCATGCAAGTTAGAAGAACACTGAAGGGATCCAGCTTACGG  1116
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGGATCATGCAAGTTAGAAGAACACTGAAGGGATCCAGCTTACGG  1149

seq1  AGAGGGAGCCACAGAAGGGACATTGGAACTGGGCCAGGGACCATAGGTAA  1166
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGCCACAGAAGGGACATTGGAACTGGGCCAGGGACCATAGGTAA  1199

seq1  GATCCCAAGGAGGAATTC  1184
      ||||||||||||||||||
seq2  GATCCCAAGGAGGAATTC  1217