BAC Information

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BAC

Clone NameB6Ng01-305K09
Chromosome4 (Build37)
Map Location 55,348,783 - 55,438,366
singlet/doubletdoublet
Overlap geneRad23b, LOC666953, LOC100041348
Upstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211
Downstream geneKlf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305K09.bB6Ng01-305K09.g
ACCGA098888GA098889
length1,131228
definitionB6Ng01-305K09.b B6Ng01-305K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,348,783 - 55,349,913)(55,438,139 - 55,438,366)
sequence
gaattctctattttctgactctccagcattggaattacaaggatatacca
caatgctcggcttttttacatatcgtctagagactggatttagctcctca
tggtgatgtgctgagcatttgctaacacctcagctcccaattttgtgttt
ttgattttcccccctttttttctttgttccttctttctctctttcctttt
ctatacatatctgttgatatctgtcttctctcggcattgccgggcatcag
tcctcacgaccccctacatatacagaaatttacagctgttcagacccttt
gtatgtagtagtatacagttacctgttacctgtgaccacactctcatgta
ctgtaggtcatctctaggttacttgacacttaatgctatgtaaattctat
gtaaacacttactatatttccttgcttaggaaataataacaagaaaaagc
acctccacatattcattatggacaacttaaaaaaaaaacttttattttat
ttttatgtatagaagtgttttgcttgcatgcctgtgtgttcagtacccac
agaggccagaagagggtggtggattccccaggattggagttaacagtttt
gagctgccatgtgggtgctaggaatcgaatctaggtactctagaattgta
gccagtgctcttaactgctgagccatctccccagctccttgcaattattt
ttgatccgcagctagatgaatctgtagatgtggaacctcatctatggtga
tgtctctaaaatataaattctctacaaagcagatcaagaccaagaaaaca
cacaagtgtgagcaactttggcaaaaatcgtcttattgtctgtcacaaga
gttaagacttagaacagcccagagtcatgccaggactacagagatatctg
tctattcaacagagtttattgactaattgtctttttctatgggttttcta
tataaggcttttgtgattttcctaattgactcctaacaccctccccccaa
cacacacacacacacacaacacgaacatctattattgaacaactttgcat
atttataatttcatttgtcacatggttagggattatttagggttcggact
agagaacatggcttatggtaagaacatggct

aacctcacagagccatgtttagaaaagaaagagctgggtatgctggtaca
cactgtaatcctaaccctatagggagacaaatggatccctggggtttgtc
agacagccaagcattgcctatcaggtgagtttcaggccagttccaaacct
tgagaaactctgaaggaaaaaaaaaatagaagggaaggaagaagaggagg
aggaaggaggatgaagaggagggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_55348783_55349913
seq2: B6Ng01-305K09.b_46_1176

seq1  GAATTCTCTATTTTCTGACTCTCCAGCATTGGAATTACAAGGATATACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATTTTCTGACTCTCCAGCATTGGAATTACAAGGATATACCA  50

seq1  CAATGCTCGGCTTTTTTACATATCGTCTAGAGACTGGATTTAGCTCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTCGGCTTTTTTACATATCGTCTAGAGACTGGATTTAGCTCCTCA  100

seq1  TGGTGATGTGCTGAGCATTTGCTAACACCTCAGCTCCCAATTTTGTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATGTGCTGAGCATTTGCTAACACCTCAGCTCCCAATTTTGTGTTT  150

seq1  TTGATTTTCCCCCCTTTTTTTCTTTGTTCCTTCTTTCTCTCTTTCCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTCCCCCCTTTTTTTCTTTGTTCCTTCTTTCTCTCTTTCCTTTT  200

seq1  CTATACATATCTGTTGATATCTGTCTTCTCTCGGCATTGCCGGGCATCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACATATCTGTTGATATCTGTCTTCTCTCGGCATTGCCGGGCATCAG  250

seq1  TCCTCACGACCCCCTACATATACAGAAATTTACAGCTGTTCAGACCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACGACCCCCTACATATACAGAAATTTACAGCTGTTCAGACCCTTT  300

seq1  GTATGTAGTAGTATACAGTTACCTGTTACCTGTGACCACACTCTCATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAGTAGTATACAGTTACCTGTTACCTGTGACCACACTCTCATGTA  350

seq1  CTGTAGGTCATCTCTAGGTTACTTGACACTTAATGCTATGTAAATTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGTCATCTCTAGGTTACTTGACACTTAATGCTATGTAAATTCTAT  400

seq1  GTAAACACTTACTATATTTCCTTGCTTAGGAAATAATAACAAGAAAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACACTTACTATATTTCCTTGCTTAGGAAATAATAACAAGAAAAAGC  450

seq1  ACCTCCACATATTCATTATGGACAACTTAAAAAAAAAACTTTTATTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCACATATTCATTATGGACAACTTAAAAAAAAAACTTTTATTTTAT  500

seq1  TTTTATGTATAGAAGTGTTTTGCTTGCATGCCTGTGTGTTCAGTACCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTATAGAAGTGTTTTGCTTGCATGCCTGTGTGTTCAGTACCCAC  550

seq1  AGAGGCCAGAAGAGGGTGGTGGATTCCCCAGGATTGGAGTTAACAGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCAGAAGAGGGTGGTGGATTCCCCAGGATTGGAGTTAACAGTTTT  600

seq1  GAGCTGCCATGTGGGTGCTAGGAATCGAATCTAGGTACTCTAGAATTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCCATGTGGGTGCTAGGAATCGAATCTAGGTACTCTAGAATTGTA  650

seq1  GCCAGTGCTCTTAACTGCTGAGCCATCTCCCCAGCTCCTTGCAATTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGCTCTTAACTGCTGAGCCATCTCCCCAGCTCCTTGCAATTATTT  700

seq1  TTGATCCGCAGCTAGATGAATCTGTAGATGTGGAACCTCATCTATGGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCGCAGCTAGATGAATCTGTAGATGTGGAACCTCATCTATGGTGA  750

seq1  TGTCTCTAAAATATAAATTCTCTACAAAGCAGATCAAGACCAAGAAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTAAAATATAAATTCTCTACAAAGCAGATCAAGACCAAGAAAACA  800

seq1  CACAAGTGTGAGCAACTTTGGCAAAAATCGTCTTATTGTCTGTCACAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTGTGAGCAACTTTGGCAAAAATCGTCTTATTGTCTGTCACAAGA  850

seq1  GTTAAGACTTAGAACAGCCCAGAGTCATGCCAGGACTACAGAGATATCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGACTTAGAACAGCCCAGAGTCATGCCAGGACTACAGAGATATCTG  900

seq1  TCTA-TCAACAGAGTTTATTGACTAATTGTCTTTTTCCTATGGGTTTTCT  949
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTATTCAACAGAGTTTATTGACTAATTGTCTTTTT-CTATGGGTTTTCT  949

seq1  ATATAAGGCTTTTGTGATTTTTCCTAATTGACTCCTAACACCCTCCCCCC  999
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATATAAGGCTTTTGTGA-TTTTCCTAATTGACTCCTAACACCCTCCCCCC  998

seq1  AACACACACACACACACACAAACACGAACAATCTAT--ATGAACAAC-TT  1046
      ||||||||||||||||||| ||||||||| ||||||   |||||||| ||
seq2  AACACACACACACACACAC-AACACGAAC-ATCTATTATTGAACAACTTT  1046

seq1  GCATATTTAT-ATTTCATTTGTCACAT-GTTAGGAATATTTTAGGTTCGG  1094
      |||||||||| |||||||||||||||| |||||| ||  |||||| |  |
seq2  GCATATTTATAATTTCATTTGTCACATGGTTAGGGATTATTTAGGGTTCG  1096

seq1  GACTAGAG-ACATGGCTTAGTGGTTAAGAACATTGGCT  1131
      |||||||| |||||||||| ||| |||||||| |||||
seq2  GACTAGAGAACATGGCTTA-TGG-TAAGAACA-TGGCT  1131


seq1: chr4_55438139_55438366
seq2: B6Ng01-305K09.g_71_298 (reverse)

seq1  CCCCACCCTCCTCTTCATCCTCCTTCCTCCTCCTCTTCTTCCTTCCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCTCCTCTTCATCCTCCTTCCTCCTCCTCTTCTTCCTTCCCTTC  50

seq1  TATTTTTTTTTTCCTTCAGAGTTTCTCAAGGTTTGGAACTGGCCTGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTTTTCCTTCAGAGTTTCTCAAGGTTTGGAACTGGCCTGAAAC  100

seq1  TCACCTGATAGGCAATGCTTGGCTGTCTGACAAACCCCAGGGATCCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGATAGGCAATGCTTGGCTGTCTGACAAACCCCAGGGATCCATTT  150

seq1  GTCTCCCTATAGGGTTAGGATTACAGTGTGTACCAGCATACCCAGCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCTATAGGGTTAGGATTACAGTGTGTACCAGCATACCCAGCTCTT  200

seq1  TCTTTTCTAAACATGGCTCTGTGAGGTT  228
      ||||||||||||||||||||||||||||
seq2  TCTTTTCTAAACATGGCTCTGTGAGGTT  228


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