BAC Information

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BAC

Clone NameB6Ng01-305K16
Chromosome4 (Build37)
Map Location 144,309,507 - 144,310,679
singlet/doubletsinglet
Overlap geneLOC546849
Upstream geneLOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436
Downstream geneGm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305K16.bB6Ng01-305K16.g
ACCGA098900GA098901
length1,1651,232
definitionB6Ng01-305K16.b B6Ng01-305K16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggactcttccctcttttatttactacacatttcaccttcttc
tttacttccttcttttttctttctcctcccttcaacttgctatttttcta
attggttttttttgttgttgttgttttgttttgagacaggatttctctgt
atagcatggctgtcctggaactcactctgtagaccaggctggcgtcgaac
tcagaaatctgcctgcctctgcctcccaagtgctgggattaaatgtgtgt
gccaccacacccagctctgctatttttctttttccttgaggtggcagctc
acaatgtagtctagcctagccttagccctatacttgccatccctactcca
tctcctgaggacggaaactacaagaagcatcactactcttgtctatgaag
ctcttttctgtagactaagaaaataatttcagacccagttactgcacatt
aagtcctgatagatataaaagcaccttcagccacagcctcctctttctcc
atttttccatgtctttgtttccagatgacttcctttcatcaacatgagac
tgtggggatagagatgaatttactcagctttgtctcaaatacagatcagg
ctgtctttgatgacatgcatgtaatagatttatccagccctctagtgtag
ttgcactggacaattgtgctctgagacggccatctgaattaaagtcatcc
ccatctgggtttaggacaagaaacaagtttggcttatatgagaggtgggc
tataggattgagttctgatgtcccaattctaagtggaatcctggtagtag
ctagaaagttcagtgattacctcagaagacaggtgactgcaggggaaatt
gtgacaagtgttcagccaggttttctgggtagcgttgctgctgtgttctc
actgacacaatagccattggttaactttccttttgcctcaaagttctcat
cagatatgaagcatggcatctgaatcacaggttggtgaaagcctagatga
cacttgataagactcataggtttgataaggaggtaaaacttaatattctc
tctgtgaggaattttttctttttacccatgaacagtgggtcacttagagg
aacaagcaggtacaggcttactttgaacttctgggtactcataggaacct
ttggaatctcccaac
gaattctcacccgaggaataccgaaaggctgagaaacacctgaaaaaatg
ttcaacatccttaatcatcaaagaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atagatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaaggacccagat
gtccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttacgaaattcctaaggca
aatggttggaatctggagggcatcatcctgagtgaggtaacccaatcaca
aaagaactcaaatgaaatgtactcactgataagtggatattaacccagaa
acttagaatagcgagatataaggtacaatatgcaaaacatatgaaactga
agaagaacgaagaccaaagtgtggacactttgctcattcttagaattgga
aacaatcacccatggaaggagttacagagacaaagtttggagctgagaca
aaaggatagtccatctagagactgccatatccggggatccatcccataat
tagcctccaaacgatgacaccattgtatacactagcaagcctttgttgca
aggatggtgatatagctgtccctttgtgagactaggccggggccctagca
acacagaagtggatgctcacagtccactattgggatggatcacaggaccc
cattgggagaagcttagaagaaaggtatccagaagcttaaggagatctgc
aatcctattcggtggaacaccattatgaactaacccagtaccccagaagc
ttctgactctgagctgcatatgtatcaaagatttgaatctagatttggcc
atcactggataagaagagcccaattggttaggccaacctttaatatgctc
ccgattacaggacgtcaggccaaaattgggaattgcgtgggtactggatg
gcacgttcgctttaccattcgatcgttcctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_144309507_144310679
seq2: B6Ng01-305K16.b_42_1206 (reverse)

seq1  GTTGGGAGAT--CCAAGGTCCTTATTTGTAGTACCAGAAGTTCAAA-TTA  47
      ||||||||||  | ||||| | |||  |||   ||||||||||||| | |
seq2  GTTGGGAGATTCCAAAGGTTCCTATGAGTA--CCCAGAAGTTCAAAGTAA  48

seq1  GCCTGTAACCCTTGCTTGTTCCTCTAAAGTGACCCACTGTTCATGGTAAA  97
      |||||||   | ||||||||||||| ||||||||||||||||||||  ||
seq2  GCCTGTA---CCTGCTTGTTCCTCT-AAGTGACCCACTGTTCATGGGTAA  94

seq1  AAAGAAAAAATTCCTCACAGGAGAGGAATATAAGTTTTTACCT-CTTATC  146
      ||||||||||||||||||| |||| |||||| |  |||||||| ||||||
seq2  AAAGAAAAAATTCCTCACA-GAGA-GAATATTAAGTTTTACCTCCTTATC  142

seq1  AAAACCTATGGAGTCTTATCAAGTGTCATCTTAGGCTTTCACCAACCTGG  196
       |||||||| |||||||||||||||||||| ||||||||||||||||| |
seq2  -AAACCTAT-GAGTCTTATCAAGTGTCATC-TAGGCTTTCACCAACCT-G  188

seq1  TGATTCAGATGCCATTGCTTCATATCTGATGAGAACTTTGAGGCAAAAGG  246
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGATTCAGATGCCA-TGCTTCATATCTGATGAGAACTTTGAGGCAAAAGG  237

seq1  -AAGTTAACCAATGGCTATTGTGTCAGTGAGAACACAGCAGCAACGCTAC  295
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAACCAATGGCTATTGTGTCAGTGAGAACACAGCAGCAACGCTAC  287

seq1  CCAGAAAACCTGGCTGAACACTTGTCACAATTTCCCCTGCAGTCACCTGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAACCTGGCTGAACACTTGTCACAATTTCCCCTGCAGTCACCTGT  337

seq1  CTTCTGAGGTAATCACTGAACTTTCTAGCTACTACCAGGATTCCACTTAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGGTAATCACTGAACTTTCTAGCTACTACCAGGATTCCACTTAG  387

seq1  AATTGGGACATCAGAACTCAATCCTATAGCCCACCTCTCATATAAGCCAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGACATCAGAACTCAATCCTATAGCCCACCTCTCATATAAGCCAA  437

seq1  ACTTGTTTCTTGTCCTAAACCCAGATGGGGATGACTTTAATTCAGATGGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTCTTGTCCTAAACCCAGATGGGGATGACTTTAATTCAGATGGC  487

seq1  CGTCTCAGAGCACAATTGTCCAGTGCAACTACACTAGAGGGCTGGATAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCAGAGCACAATTGTCCAGTGCAACTACACTAGAGGGCTGGATAAA  537

seq1  TCTATTACATGCATGTCATCAAAGACAGCCTGATCTGTATTTGAGACAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTACATGCATGTCATCAAAGACAGCCTGATCTGTATTTGAGACAAA  587

seq1  GCTGAGTAAATTCATCTCTATCCCCACAGTCTCATGTTGATGAAAGGAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTAAATTCATCTCTATCCCCACAGTCTCATGTTGATGAAAGGAAG  637

seq1  TCATCTGGAAACAAAGACATGGAAAAATGGAGAAAGAGGAGGCTGTGGCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGGAAACAAAGACATGGAAAAATGGAGAAAGAGGAGGCTGTGGCT  687

seq1  GAAGGTGCTTTTATATCTATCAGGACTTAATGTGCAGTAACTGGGTCTGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGCTTTTATATCTATCAGGACTTAATGTGCAGTAACTGGGTCTGA  737

seq1  AATTATTTTCTTAGTCTACAGAAAAGAGCTTCATAGACAAGAGTAGTGAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTCTTAGTCTACAGAAAAGAGCTTCATAGACAAGAGTAGTGAT  787

seq1  GCTTCTTGTAGTTTCCGTCCTCAGGAGATGGAGTAGGGATGGCAAGTATA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGTAGTTTCCGTCCTCAGGAGATGGAGTAGGGATGGCAAGTATA  837

seq1  GGGCTAAGGCTAGGCTAGACTACATTGTGAGCTGCCACCTCAAGGAAAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAAGGCTAGGCTAGACTACATTGTGAGCTGCCACCTCAAGGAAAAA  887

seq1  GAAAAATAGCAGAGCTGGGTGTGGTGGCACACACATTTAATCCCAGCACT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAGCAGAGCTGGGTGTGGTGGCACACACATTTAATCCCAGCACT  937

seq1  TGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGACGCCAGCCTGGTCTAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGACGCCAGCCTGGTCTAC  987

seq1  AGAGTGAGTTCCAGGACAGCCATGCTATACAGAGAAATCCTGTCTCAAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTTCCAGGACAGCCATGCTATACAGAGAAATCCTGTCTCAAAA  1037

seq1  CAAAACAACAACAACAAAAAAAACCAATTAGAAAAATAGCAAGTTGAAGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAACAACAACAAAAAAAACCAATTAGAAAAATAGCAAGTTGAAGG  1087

seq1  GAGGAGAAAGAAAAAAGAAGGAAGTAAAGAAGAAGGTGAAATGTGTAGTA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAAGAAAAAAGAAGGAAGTAAAGAAGAAGGTGAAATGTGTAGTA  1137

seq1  AATAAAAGAGGGAAGAGTCCTGGAATTC  1173
      ||||||||||||||||||||||||||||
seq2  AATAAAAGAGGGAAGAGTCCTGGAATTC  1165