BAC Information

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BAC

Clone NameB6Ng01-305L07
Chromosome4 (Build37)
Map Location 5,544,811 - 5,695,933
singlet/doubletdoublet
Overlap gene1700012H17Rik
Upstream geneImpad1, LOC100039338
Downstream geneLOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414, Tox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305L07.bB6Ng01-305L07.g
ACCGA098930GA098931
length1,091792
definitionB6Ng01-305L07.b B6Ng01-305L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,694,846 - 5,695,933)(5,544,811 - 5,545,602)
sequence
gaattcagaacagaactggattccattccaaataagtcatggttcaggag
ggaagactgacagcaagggagcatagctggggccagtgagtcaatgttac
tgagtggaaatatctggtatccggggactctggcttgatggaccttctac
ggcttttattgaaagcaggccccagggggtaagaagaaaaaccaaatttg
ataatggtcatatacagtgggctacttctctaaactgaagtagcaaagat
ttttgctaccacagtgtgatccaggattaagacaaggaagacaggccatg
actttctggcttttgaggcttgtaggaagctgaccaccctgagcactatg
gcgaagggtacttccaggacagaatgtgtgcgtggaccacatgtacaaat
ccacagcatggagccatgctcacagcagagtgggaaagcaacacaatgaa
ctaaatcctttgggattatggacattgtgttatcagtaaaacattaatga
caaatggtaaatactttcaaaactaaaagctaatggcaggtgtaccccag
agtctatccacaggcaaagctcataaaaaagcattacataactatttata
aggacaaatatcttttggtatcaatgtttaaaaggttatacatctaagtt
ttaaatacataaagtacatttaatctttcagtttttgaaatgaagttatc
agagaacctaaatctattaagcttaatgcggactaattaagaaaaacctg
caaaaactgccttctagttataaatacagattatgtttactaatatacat
attcatgaggcacttattatacaaccattacagacatagcacttggtaca
gggtgcttcttgtgaatcagaactaccacaaggacaatgacatagtaact
cctactatgaagtctctgaggcaggaaaggctgcattttatacatcaaga
caccgagaagccaagatattaggatgctcaatagttcatccagaaaatgc
ttgctctgcctctgctatatttctaacatggcaggctggctccaagaagt
gatgctgctcatgatcagaacaagaagaaccctgagctctg

gaattctaaagaaaggctcattcattattcccagtaatatctacactgtc
acagtctatgaataagactggatgtcttacttctggattgctggaaggac
tatttttagatactgaagaaatgagaaatagaagtaatcataaatttgaa
aactgcaaagcagcccagtcctaaagtggcaatctggctagtagctaata
aatgtgccatcagctactcaaataaggatatcctgggaaaggacactggc
tgtcattcactcagcactaccctacctgagtccaactctaagccaagagg
cacaagacagtgagttggacaggatggtctttggtcttgaagaactttcc
ctcagccattaaaaccggcatagagaaatcattgcactacagtgcccata
cagaaatgggctctgtccacagctctggggcagtttggatttcaccagct
gatgtcatgcttggctgtgaaatgtttggatgtggaatcgttccctaggc
agcaaagatagaaagcaatagtcttggttcaagaaaaattatatatctaa
tggtttggaacatatcatcaggaagttttagaatcatggcaaggaaagag
ggaaggaatgagataaaaagtaccgatgaggccaggtgataaagagcaaa
agaatctggaattactttggagtccctgggagatgccaaggttttcaaac
agaggtgagagtattaggcttatgaagggtgagctgcagtaaaaatggga
gcagtcaggtactgggatatcaatggggttggtggggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_5694846_5695933
seq2: B6Ng01-305L07.b_46_1136 (reverse)

seq1  CAGAGCTCA-GGTTCTTCTTG-TCTGACCATGAGCAGCATCAC-TCTTGG  47
      ||||||||| ||||||||||| ||||| ||||||||||||||| ||||||
seq2  CAGAGCTCAGGGTTCTTCTTGTTCTGATCATGAGCAGCATCACTTCTTGG  50

seq1  AGCCAGCCTGCCATGTTAGAAATATAGCAGAGGCAGAGCAAGCATTTTCT  97
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGCCAGCCTGCCATGTTAGAAATATAGCAGAGGCAGAGCAAGCATTTTC-  99

seq1  TGGATGAACTATTGAGCATCCTAATATCTTGGCTTCTCGGTGTCTTGATG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAACTATTGAGCATCCTAATATCTTGGCTTCTCGGTGTCTTGATG  149

seq1  TATAAAATGCAGCC-TTCCTGCCTCAGAGACTTCATAGTAGGAGTTACTA  196
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TATAAAATGCAGCCTTTCCTGCCTCAGAGACTTCATAGTAGGAGTTACTA  199

seq1  TGTCATTGTCCTTGTGGTAGTTCTGATTCACAAGAAGCACCCTGTACCAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGTCCTTGTGGTAGTTCTGATTCACAAGAAGCACCCTGTACCAA  249

seq1  GTGCTATGTCTGTAATGGTTGTATAATAAGTGCCTCATGAATATGTATAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTATGTCTGTAATGGTTGTATAATAAGTGCCTCATGAATATGTATAT  299

seq1  TAGTAAACATAATCTGTATTTATAACTAGAAGGCAGTTTTTGCAGGTTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAACATAATCTGTATTTATAACTAGAAGGCAGTTTTTGCAGGTTTT  349

seq1  TCTTAATTAGTCCGCATTAAGCTTAATAGATTTAGGTTCTCTGATAACTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTAGTCCGCATTAAGCTTAATAGATTTAGGTTCTCTGATAACTT  399

seq1  CATTTCAAAAACTGAAAGATTAAATGTACTTTATGTATTTAAAACTTAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAAAAACTGAAAGATTAAATGTACTTTATGTATTTAAAACTTAGA  449

seq1  TGTATAACCTTTTAAACATTGATACCAAAAGATATTTGTCCTTATAAATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAACCTTTTAAACATTGATACCAAAAGATATTTGTCCTTATAAATA  499

seq1  GTTATGTAATGCTTTTTTATGAGCTTTGCCTGTGGATAGACTCTGGGGTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTAATGCTTTTTTATGAGCTTTGCCTGTGGATAGACTCTGGGGTA  549

seq1  CACCTGCCATTAGCTTTTAGTTTTGAAAGTATTTACCATTTGTCATTAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCATTAGCTTTTAGTTTTGAAAGTATTTACCATTTGTCATTAAT  599

seq1  GTTTTACTGATAACACAATGTCCATAATCCCAAAGGATTTAGTTCATTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTGATAACACAATGTCCATAATCCCAAAGGATTTAGTTCATTGT  649

seq1  GTTGCTTTCCCACTCTGCTGTGAGCATGGCTCCATGCTGTGGATTTGTAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTCCCACTCTGCTGTGAGCATGGCTCCATGCTGTGGATTTGTAC  699

seq1  ATGTGGTCCACGCACACATTCTGTCCTGGAAGTACCCTTCGCCATAGTGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTCCACGCACACATTCTGTCCTGGAAGTACCCTTCGCCATAGTGC  749

seq1  TCAGGGTGGTCAGCTTCCTACAAGCCTCAAAAGCCAGAAAGTCATGGCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTGGTCAGCTTCCTACAAGCCTCAAAAGCCAGAAAGTCATGGCCT  799

seq1  GTCTTCCTTGTCTTAATCCTGGATCACACTGTGGTAGCAAAAATCTTTGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTTGTCTTAATCCTGGATCACACTGTGGTAGCAAAAATCTTTGC  849

seq1  TACTTCAGTTTAGAGAAGTAGCCCACTGTATATGACCATTATCAAATTTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAGTTTAGAGAAGTAGCCCACTGTATATGACCATTATCAAATTTG  899

seq1  GTTTTTCTTCTTACCCCCTGGGGCCTGCTTTCAATAAAAGCCGTAGAAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTTCTTACCCCCTGGGGCCTGCTTTCAATAAAAGCCGTAGAAGG  949

seq1  TCCATCAAGCCAGAGTCCCCGGATACCAGATATTTCCACTCAGTAACATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAAGCCAGAGTCCCCGGATACCAGATATTTCCACTCAGTAACATT  999

seq1  GACTCACTGGCCCCAGCTATGCTCCCTTGCTGTCAGTCTTCCCTCCTGAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACTGGCCCCAGCTATGCTCCCTTGCTGTCAGTCTTCCCTCCTGAA  1049

seq1  CCATGACTTATTTGGAATGGAATCCAGTTCTGTTCTGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACTTATTTGGAATGGAATCCAGTTCTGTTCTGAATTC  1091


seq1: chr4_5544811_5545602
seq2: B6Ng01-305L07.g_69_860

seq1  GAATTCTAAAGAAAGGCTCATTCATTATTCCCAGTAATATCTACACTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGAAAGGCTCATTCATTATTCCCAGTAATATCTACACTGTC  50

seq1  ACAGTCTATGAATAAGACTGGATGTCTTACTTCTGGATTGCTGGAAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTATGAATAAGACTGGATGTCTTACTTCTGGATTGCTGGAAGGAC  100

seq1  TATTTTTAGATACTGAAGAAATGAGAAATAGAAGTAATCATAAATTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAGATACTGAAGAAATGAGAAATAGAAGTAATCATAAATTTGAA  150

seq1  AACTGCAAAGCAGCCCAGTCCTAAAGTGGCAATCTGGCTAGTAGCTAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAAAGCAGCCCAGTCCTAAAGTGGCAATCTGGCTAGTAGCTAATA  200

seq1  AATGTGCCATCAGCTACTCAAATAAGGATATCCTGGGAAAGGACACTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCCATCAGCTACTCAAATAAGGATATCCTGGGAAAGGACACTGGC  250

seq1  TGTCATTCACTCAGCACTACCCTACCTGAGTCCAACTCTAAGCCAAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTCACTCAGCACTACCCTACCTGAGTCCAACTCTAAGCCAAGAGG  300

seq1  CACAAGACAGTGAGTTGGACAGGATGGTCTTTGGTCTTGAAGAACTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGACAGTGAGTTGGACAGGATGGTCTTTGGTCTTGAAGAACTTTCC  350

seq1  CTCAGCCATTAAAACCGGCATAGAGAAATCATTGCACTACAGTGCCCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCATTAAAACCGGCATAGAGAAATCATTGCACTACAGTGCCCATA  400

seq1  CAGAAATGGGCTCTGTCCACAGCTCTGGGGCAGTTTGGATTTCACCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGGGCTCTGTCCACAGCTCTGGGGCAGTTTGGATTTCACCAGCT  450

seq1  GATGTCATGCTTGGCTGTGAAATGTTTGGATGTGGAATCGTTCCCTAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCATGCTTGGCTGTGAAATGTTTGGATGTGGAATCGTTCCCTAGGC  500

seq1  AGCAAAGATAGAAAGCAATAGTCTTGGTTCAAGAAAAATTATATATCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGATAGAAAGCAATAGTCTTGGTTCAAGAAAAATTATATATCTAA  550

seq1  TGGTTTGGAACATATCATCAGGAAGTTTTAGAATCATGGCAAGGAAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGGAACATATCATCAGGAAGTTTTAGAATCATGGCAAGGAAAGAG  600

seq1  GGAAGGAATGAGATAAAAAGTACCGATGAGGCCAGGTGATAAAGAGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAATGAGATAAAAAGTACCGATGAGGCCAGGTGATAAAGAGCAAA  650

seq1  AGAATCTGGAATTACTTTGGAGTCCCTGGGAGATGCCAAGGTTTTCAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTGGAATTACTTTGGAGTCCCTGGGAGATGCCAAGGTTTTCAAAC  700

seq1  AGAGGTGAGAGTATTAGGCTTATGAAGGGTGAGCTGCAGTAAAAATGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGAGAGTATTAGGCTTATGAAGGGTGAGCTGCAGTAAAAATGGGA  750

seq1  GCAGTCAGGTACTGGGATATCAATGGGGTTGGTGGGGAGGGA  792
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGGTACTGGGATATCAATGGGGTTGGTGGGGAGGGA  792


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