BAC Information

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BAC

Clone NameB6Ng01-305P09
Chromosome4 (Build37)
Map Location 51,892,252 - 52,007,379
singlet/doubletdoublet
Overlap geneLOC384015
Upstream geneLOC100040979, LOC666681, LOC100040814
Downstream geneLOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305P09.bB6Ng01-305P09.g
ACCGA099120GA099121
length1,209998
definitionB6Ng01-305P09.b B6Ng01-305P09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,892,252 - 51,892,957)(52,006,851 - 52,007,379)
sequence
gaattcagtctttgagggatgctgtcaatgaagacctagcggcaatagag
aagtccatagacgctttagaaaaatctttgacctccctgtctgaggtagt
tttacagaacaggagaggtcttgatttgttgttcctaaaggaaggaggac
tgtgtgctgcccttaaagaagagtgctgcttctatgcagatcatacagga
atagttagagactctatgcagaaactgagagaaagattagagcgaaggaa
acgggaacgggatgctcaacgggggtggtttgagtcgtggtttgaatcac
gaccatcttggataacttctttaatttccgctgtagccggaccaatcctt
atgatatgcttagctttagttttcggcccttgtataataaatagaggaat
ggctttcatccagagtaaaattgatacagtaaaactcatggttcttcaaa
ggcaatatcaacctatagttcaggtagatgaagagttaagggacaccgac
ctctaaaattctatgattagaattagtctaaacagaagaagaggggaatg
aaaggaaataaaactgtaattcatgtaatgtatgttaaatagcccaaaga
gttgtttctgagctttgaaacctggggctgagaacatagcagaacagacc
aggacatgcccgggcaagcccatcgcctccctagctcccacccctctgac
ctaagttaaatgttacaggctgctgatgtttaaatggaccaatcatgtga
aaccgcgccaattcctcccccagccccactccttttctataaaaccccct
agcttccaagcctcgtggtcgaatccactgtctcctgttgtgtgagatac
gtttcgacccggagctccgccattaaaaaacctcttgttgttacatcaag
gtgttgtgttctattcgcgattcttgggtgcacgccgaatcgggagctga
gtgggggtttccccactgagttctttcagtacctaccagccttcaagtct
gaagctagttccagactctgatcaagatagacttacctctagactccatg
tctcatattcatctgtaacaaggcatggtcaggacacaaagagaacattc
agggaacacattcctccaccttattttgttcctacctggtgcttgattag
gacattccattttacactttccgaaacatctacgttctgttaactcgcgc
tcctatttt

gaattcacataaatttacggagtgactagtgaatgtttaaaactgtccca
accctaatgaattttagaggaaaaatagctttagtttagagggaacatct
agaataatgaactgatgttttaaaagtatatcaaaaaattgtaatagaca
gcctgagttggtgtttagaattaatctttctttttctttcaacatcttgg
ttacatgcttagttacatttaaattgacttaatgcatcacattaatgtgt
attatcacattcctctcctcaaagtaaaaataaaagttacactagctctt
ttcagaaggtgaatttccatagatctatttttgttgttgttgttacattt
acaaatgcttgaggcaaatttttagtagaaccagttcacgagtcttcaac
aattttgttgagaaatatgctgaaaacatctttgaagatttttaaaagct
tggacaaagtacaatacatcacaaaagtgattttaactactttttaagtt
aaaggctgactttgttggaatctagtcagcaaacagaacccacaaattaa
tttgatttgggggggatgttatatggaaactcagtgcagtaggaacttct
aggattctacaagagtgaccctagtgaggactcctagtaatggaggactt
ggagcctgatggccttcctctgtaacaaggcaaggattcctttggtggga
ctggggtagcaaccaagtcacaaaaccttccacctacaatccatcttgac
ttcaagatgtactagggcagtggaaagtacagaatttgtgagagttacaa
accaatgacttgtctgacttaaggccatgtcaccagaaggagctcaggca
ctatactacctggatgacaagggaacaatagactggatagaccagagacc
tgtgatagaaaacaatatcagaaaatgggttcttaatgatatccttatat
attaacagactgatgcctagcccaattgtcatcagagatgcttctacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_51892252_51892957
seq2: B6Ng01-305P09.b_541_1256

seq1  CACCGACCTCTAAAATTCTATGATTAGAATTAGTCTAAACAGAAGAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGACCTCTAAAATTCTATGATTAGAATTAGTCTAAACAGAAGAAGAG  50

seq1  GGGAATGAAAGGAAATAAAACTGTAATTCATGTAATGTATGTTAAATAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGAAAGGAAATAAAACTGTAATTCATGTAATGTATGTTAAATAGC  100

seq1  CCAAAGAGTTGTTTCTGAGCTTTGAAACCTGGGGCTGAGAACATAGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAGTTGTTTCTGAGCTTTGAAACCTGGGGCTGAGAACATAGCAGA  150

seq1  ACAGACCAGGACATGCCCGGGCAAGCCCATCGCCTCCCTAGCTCCCACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCAGGACATGCCCGGGCAAGCCCATCGCCTCCCTAGCTCCCACCC  200

seq1  CTCTGACCTAAGTTAAATGTTACAGGCTGCTGATGTTTAAATGGACCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACCTAAGTTAAATGTTACAGGCTGCTGATGTTTAAATGGACCAAT  250

seq1  CATGTGAAACCGCGCCAATTCCTCCCCCAGCCCCACTCCTTTTCTATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAAACCGCGCCAATTCCTCCCCCAGCCCCACTCCTTTTCTATAAA  300

seq1  ACCCCCTAGCTTCCAAGCCTCGTGGTCGAATCCACTGTCTCCTGTTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTAGCTTCCAAGCCTCGTGGTCGAATCCACTGTCTCCTGTTGTGT  350

seq1  GAGATACGTTTCGACCCGGAGCTCCGCCATTAAAAAACCTCTTGTTGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACGTTTCGACCCGGAGCTCCGCCATTAAAAAACCTCTTGTTGTTA  400

seq1  CATCAAGGTGTTGTGTTCTATTCGCGATTCTTGGGTGCACGCCGAATCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGGTGTTGTGTTCTATTCGCGATTCTTGGGTGCACGCCGAATCGG  450

seq1  GAGCTGAGTGGGGGTTTCCCCACTGAGTTCTTTCAGTACCTACCAG-CTT  499
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGCTGAGTGGGGGTTTCCCCACTGAGTTCTTTCAGTACCTACCAGCCTT  500

seq1  CAAGTCTGAAGCTTAGTTCCAGACTCTGATCAAGATAAGACTTA-CTCTA  548
      |||||||||||| ||||||||||||||||||||||| ||||||| |||||
seq2  CAAGTCTGAAGC-TAGTTCCAGACTCTGATCAAGAT-AGACTTACCTCTA  548

seq1  GACTCCATGTCTCATATTCATTCTGTAACAAGGCATGGTCAGGACAC-AA  597
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  GACTCCATGTCTCATATTCA-TCTGTAACAAGGCATGGTCAGGACACAAA  597

seq1  GAG-ACATTCAGG--ACACAATCCT-CACCCTA-TTTGTT-CTACCT-GT  640
      ||| |||||||||  ||||| |||| |||| || |||||| |||||| ||
seq2  GAGAACATTCAGGGAACACATTCCTCCACCTTATTTTGTTCCTACCTGGT  647

seq1  GC-TGATTAGGACATTCCA-TTTACACTTTCGAAAACAATCTAC-TTCTG  687
      || |||||||||||||||| |||||||||||  |||| |||||| |||||
seq2  GCTTGATTAGGACATTCCATTTTACACTTTCCGAAAC-ATCTACGTTCTG  696

seq1  TTAAACTCG-TCT-CTATTTT  706
      || ||||||  || |||||||
seq2  TT-AACTCGCGCTCCTATTTT  716


seq1: chr4_52006851_52007379
seq2: B6Ng01-305P09.g_67_595 (reverse)

seq1  CTGACTAGATTCCAACAAAGTCAGCCTTTAACTTAAAAAGTAGTTAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTAGATTCCAACAAAGTCAGCCTTTAACTTAAAAAGTAGTTAAAAT  50

seq1  CACTTTTGTGATGTATTGTACTTTGTCCAAGCTTTTAAAAATCTTCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTGTGATGTATTGTACTTTGTCCAAGCTTTTAAAAATCTTCAAAG  100

seq1  ATGTTTTCAGCATATTTCTCAACAAAATTGTTGAAGACTCGTGAACTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCAGCATATTTCTCAACAAAATTGTTGAAGACTCGTGAACTGGT  150

seq1  TCTACTAAAAATTTGCCTCAAGCATTTGTAAATGTAACAACAACAACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTAAAAATTTGCCTCAAGCATTTGTAAATGTAACAACAACAACAAA  200

seq1  AATAGATCTATGGAAATTCACCTTCTGAAAAGAGCTAGTGTAACTTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATCTATGGAAATTCACCTTCTGAAAAGAGCTAGTGTAACTTTTAT  250

seq1  TTTTACTTTGAGGAGAGGAATGTGATAATACACATTAATGTGATGCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTTGAGGAGAGGAATGTGATAATACACATTAATGTGATGCATTA  300

seq1  AGTCAATTTAAATGTAACTAAGCATGTAACCAAGATGTTGAAAGAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATTTAAATGTAACTAAGCATGTAACCAAGATGTTGAAAGAAAAAG  350

seq1  AAAGATTAATTCTAAACACCAACTCAGGCTGTCTATTACAATTTTTTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTAATTCTAAACACCAACTCAGGCTGTCTATTACAATTTTTTGAT  400

seq1  ATACTTTTAAAACATCAGTTCATTATTCTAGATGTTCCCTCTAAACTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTAAAACATCAGTTCATTATTCTAGATGTTCCCTCTAAACTAAA  450

seq1  GCTATTTTTCCTCTAAAATTCATTAGGGTTGGGACAGTTTTAAACATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTTTCCTCTAAAATTCATTAGGGTTGGGACAGTTTTAAACATTCA  500

seq1  CTAGTCACTCCGTAAATTTATGTGAATTC  529
      |||||||||||||||||||||||||||||
seq2  CTAGTCACTCCGTAAATTTATGTGAATTC  529


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