BAC Information

Click to search

BAC

Clone NameB6Ng01-306D01
Chromosome4 (Build37)1 (Build37)
Map Location 20,619,557 - 20,620,68848,554,357 - 48,554,887
singlet/doubletsingletsinglet
Overlap geneE130310K16Rik
Upstream geneWwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream genePrdm13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306D01.bB6Ng01-306D01.g
ACCGA099292GA099293
length1,1251,017
definitionB6Ng01-306D01.b B6Ng01-306D01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,619,557 - 20,620,688)(48,554,357 - 48,554,887)
sequence
gaattcatcataaccaagttccacagttgtacatactaagttgaacacgt
tgaattattttcacaaaagattaacaatcatcttgtggcattgatataaa
tcttgatttagtgattgagttgtcatatattaataggcttgagtcaatta
atacacatattaaataatgccctgatttgattcactactttcacttaata
gaaattctacagaacacatacagaaagttcattagcatagctaataaaaa
ttcatttttcttatatgccaatggtttttaaagaaaaagacacatgagaa
aaattaaactaacattgatctctatgccaagaagtaaaattaaatgaaaa
atggtctctgggtacccattcctcattattacaatatgtaggaatagtac
aatatcctacattggttttcttttttattatttctaatcttgctgcataa
tagaaataaaataggtgattaaatattttctacttgaaactagtgtgccc
tgtcttctgactaaatttctgaagctatatatgtctttcaagtcgaaaga
gctattgagaaggcagatttctcagtgatttctgataaatgtaggcttgc
tgagagattaacttattggacacacataaattaattttcctcaaaccttt
aagaatcatcttattataaaagtgttgtcattttgtaatatttaaatcac
ttatagtgcacagtttggtttgtaattttagaataatgtatttaatctac
ctcagtcatcatcattttcttaccactttataaagcctatgtaatcacaa
atccaaggacagccccattagaaggcagaactgcagcttgccctaaattt
ggaactactccaagagaaaacttaagtccagtgcagttttagttccagtc
tctgtcaggagctgcccaggatgcccctacaagtctgatacattcagaca
ttgagcttcagaatcagattgtcatcactctactggttcgttgctgagag
gatacaagtgtcagacattctcagagtgccacagaagcagacatgtgatg
ataacatcaccatcgtaagtacagggttcgtttttctgcttgttttgcag
aatagagctcatatgattgttttgc

gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgcttttcttgcatctaacgagatgatcatgtggtttttgtcttt
aagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaaaagtttgtgcataactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatgatcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcagcatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttaattttctcaaagaaccaactcctcgtttggttaattctttga
atagttctttgtttccacttgagttgatttcatccctgactttgattatt
ttcctgccgtctactcctcttgggtgttttgcttccttttttctagggct
tttagatgtgttgccaagctgctagtatgtgctgtcttccctatttcttc
cttgggaggtactctagagctatgagttttccctcttagaaatgcctttg
cattggtgtcccatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_20619557_20620688
seq2: B6Ng01-306D01.b_44_1168

seq1  GAATTCATCATAACCAAGTTCCACAGTTGTACATACTAAGTTGAACACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATAACCAAGTTCCACAGTTGTACATACTAAGTTGAACACGT  50

seq1  TGAATTATTTTCACAAAAGATTAACAATCATCTTGTGGCATTGATATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATTTTCACAAAAGATTAACAATCATCTTGTGGCATTGATATAAA  100

seq1  TCTTGATTTAGTGATTGAGTTGTCATATATTAATAGGCTTGAGTCAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATTTAGTGATTGAGTTGTCATATATTAATAGGCTTGAGTCAATTA  150

seq1  ATACACATATTAAATAATGCCCTGATTTGATTCACTACTTTCACTTAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATATTAAATAATGCCCTGATTTGATTCACTACTTTCACTTAATA  200

seq1  GAAATTCTACAGAACACATACAGAAAGTTCATTAGCATAGCTAATAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTACAGAACACATACAGAAAGTTCATTAGCATAGCTAATAAAAA  250

seq1  TTCATTTTTCTTATATGCCAATGGTTTTTAAAGAAAAAGACACATGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTCTTATATGCCAATGGTTTTTAAAGAAAAAGACACATGAGAA  300

seq1  AAATTAAACTAACATTGATCTCTATGCCAAGAAGTAAAATTAAATGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAACTAACATTGATCTCTATGCCAAGAAGTAAAATTAAATGAAAA  350

seq1  ATGGTCTCTGGGTACCCATTCCTCATTATTACAATATGTAGGAATAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTCTGGGTACCCATTCCTCATTATTACAATATGTAGGAATAGTAC  400

seq1  AATATCCTACATTGGTTTTCTTTTTTATTATTTCTAATCTTGCTGCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCTACATTGGTTTTCTTTTTTATTATTTCTAATCTTGCTGCATAA  450

seq1  TAGAAATAAAATAGGTGATTAAATATTTTCTACTTGAAACTAGTGTGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATAAAATAGGTGATTAAATATTTTCTACTTGAAACTAGTGTGCCC  500

seq1  TGTCTTCTGACTAAATTTCTGAAGCTATATATGTCTTTCAAGTCGAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTGACTAAATTTCTGAAGCTATATATGTCTTTCAAGTCGAAAGA  550

seq1  GCTATTGAGAAGGCAGATTTCTCAGTGATTTCTGATAAATGTAGGCTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGAGAAGGCAGATTTCTCAGTGATTTCTGATAAATGTAGGCTTGC  600

seq1  TGAGAGATTAACTTATTGGACACACATAAATTAATTTTCCTCAAACCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATTAACTTATTGGACACACATAAATTAATTTTCCTCAAACCTTT  650

seq1  AAGAATCATCTTATTATAAAAGTGTTGTCATTTTGTAATATTTAAATCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCATCTTATTATAAAAGTGTTGTCATTTTGTAATATTTAAATCAC  700

seq1  TTATAGTGCACAGTTTGGTTTGTAATTTTAGAATAATGTATTTAATCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTGCACAGTTTGGTTTGTAATTTTAGAATAATGTATTTAATCTAC  750

seq1  CTCAGTCATCATCATTTTCTTACCACTTTATAAAGCCTATGTAATCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCATCATCATTTTCTTACCACTTTATAAAGCCTATGTAATCACAA  800

seq1  ATCCAAGGACAGCCCCATTAGAAGGCAGAACTGCAGCTTGCCCTAAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGGACAGCCCCATTAGAAGGCAGAACTGCAGCTTGCCCTAAATTT  850

seq1  GGAACTACTCCAAGAGAAAACTTAAGTCCAGTGCAGTTTTAGTTCCAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTACTCCAAGAGAAAACTTAAGTCCAGTGCAGTTTTAGTTCCAGTC  900

seq1  TCTGTCAGGGAGCTGCCCAGGATGCCCCTACAAGGTCTGATACATTTCAG  950
      ||||||| ||||||||||||||||||||||||| |||||||||| |||||
seq2  TCTGTCA-GGAGCTGCCCAGGATGCCCCTACAA-GTCTGATACA-TTCAG  947

seq1  ACATTGAGCTTCAGAATCAAGATTGTCCATCACTCTACTGGTTCGTTGCT  1000
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  ACATTGAGCTTCAGAATC-AGATTGT-CATCACTCTACTGGTTCGTTGCT  995

seq1  GAGAGGATACAAAGTGTCAGACAATTCTCAAGAGTG-CACAGAAGCAGAC  1049
      |||||||||| ||||||||||| |||||| |||||| |||||||||||||
seq2  GAGAGGATAC-AAGTGTCAGAC-ATTCTC-AGAGTGCCACAGAAGCAGAC  1042

seq1  ATGTGATGATAACATCACCATCCTTAGGTACAAGGGTC-CTTTTCTGCT-  1097
      ||||||||||||||||||||| | || ||||| || ||  ||||||||| 
seq2  ATGTGATGATAACATCACCAT-CGTAAGTACAGGGTTCGTTTTTCTGCTT  1091

seq1  -GTTTGCAGAATAGAGCTCAATTATAATTGTTTTGC  1132
        ||||||||||||||||||  ||| ||||||||||
seq2  GTTTTGCAGAATAGAGCTCA--TATGATTGTTTTGC  1125


seq1: chr1_48554357_48554887
seq2: B6Ng01-306D01.g_545_1082 (reverse)

seq1  CCTATGGGACA-CAATG--AAAGCATTTCTAAGAGGG-AAACTCATAGCT  46
      ||||||||||| |||||  || ||||||||||||||| ||||||||||||
seq2  CCTATGGGACACCAATGCAAAGGCATTTCTAAGAGGGAAAACTCATAGCT  50

seq1  CT-GAGTGCCTCC--AAGAAGAA--ACGGGAGACAGCACATACTAGCAGC  91
      || |||| |||||  | ||||||  | || ||||||||||||||||||||
seq2  CTAGAGTACCTCCCAAGGAAGAAATAGGGAAGACAGCACATACTAGCAGC  100

seq1  TTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAA  141
      ||| ||||||||||||||||||||| |||||||||||||||  |||||||
seq2  TTGGCAACACATCTAAAAGCCCTAG-AAAAAAGGAAGCAAA-ACACCCAA  148

seq1  GAGGAGTAGACGGCAGG-AAATAATCAAACTCAGGGGTGAAATCAAC-CA  189
      ||||||||||||||||| ||||||||||| |||||| |||||||||| ||
seq2  GAGGAGTAGACGGCAGGAAAATAATCAAAGTCAGGGATGAAATCAACTCA  198

seq1  AGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGT  239
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAACA--AAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGT  246

seq1  TCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAA  289
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGAAAATTAACAAGATAGATAAACCCTTAGCTAGACTCACTAAA  296

seq1  GGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGA  346

seq1  CATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACA  389
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATAACAACAGATGCTGAAGAAATCCAAAACACCATCAGATCCTTCTACA  396

seq1  AAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTT  446

seq1  CTGGACAGATACCAGGTACCAAAGCTGAATCAGGATCAAGTTGATCATCT  489
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGATCATCT  496

seq1  AAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAA  531
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAA  538


| Home | SequenceCutter | Blast | Download |