BAC Information

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BAC

Clone NameB6Ng01-306H20
Chromosome4 (Build37)
Map Location 65,419,447 - 65,599,823
singlet/doubletdoublet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499, Tlr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306H20.bB6Ng01-306H20.g
ACCGA099511GA099512
length1,0841,060
definitionB6Ng01-306H20.b B6Ng01-306H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,419,447 - 65,420,540)(65,598,756 - 65,599,823)
sequence
gaattcaattatctctaggcattttcttagagctcagaagaggagccctg
ggaagcaggctgcatgagagtgggacctgatattgaaaggaggatgagtg
catgctgcaaggagccatcctcagagggtgcacctctgctcagtgctact
cagtaagcaggtgagagagatggaatatagcgcgggtcagctgagaccca
tacattcagctcccattctgcctcatttcctgggaggacccttaaggaga
ttcaggacaagggtccctgagttttaattcatctccattctggaggaagg
caacagagggtgtctggaaatttcccagctgttcgaccacaggctggtcc
tatccaaatcatcctgccccagctgcttcttctattccctgtgcctgccc
tggatgttttctagtcgaatttttcatcatcaccaagccatttgtttctg
tttgtaattatgcattttaatgttcattaattatggaatgcaaattgctc
agagtgcaaaatttgtaatgagttgttctaccaccctacccccatgtcta
gaaggtgggccagctgttctcagcagaaatgaaaacaaccaacgtacaag
acaatacaacaaaataccttcttctgaggcctgagtatattgtaaggtac
actataaagctgaggggtttcctggtggcacacaaaaaaggggctttgtc
tctcttggaccatggaagaccttggtctatcactttatcttttttatttt
ctatagggacctagcttcttacagctcttgtgtcctgaactggttgcctg
acttctctgacctgagatctttttagataggggacagtgaatcatatccc
cagaagccaggggaaaaattctcttagaaactggagtttcatctgacccc
accttggcttctaactggtcagtggctttggcagagcagaaagatttgtt
tttctccattataaatgaagacactggacaggtgagttggaagaagctgt
tcagtgctcatatttttgtcagagttttgtacaagagagaccatctgaag
cattgagaggaactgactgacatcgagaactttc
gaattccaatagattaagcctttttcttgagtttagaattagtctgatga
agcatcattctggcctgcagaatatataattttgcccaactcaccattct
ttggccctgagctttattagattctcaaacaaaatttgttgaaagtatga
attagtgagtatcattaacttttatttgggcatgcaagataatggaaaca
agcttttaaaaccatttccaataaaaagctttgaaataacagccacaata
cttctgtttacatttcatgaaatgatttggttacaaaggcttttctctct
taagatcatgctatttgacgtagtttcatcatctgtgtataggcatcgag
agttgtaggcaatgacatggttaagagaggtaatggtacattttgtatga
gacataaagacatatactaatactaaagtgatagttgtaggatttgtaat
ttattatgtatatattgaaaatgaagcaccattatgagtctttatataat
tatgctggtctttttgaatacacttccatggagttattactttcattttc
catataaaagctttatcttaaaaaggttgattgacatttttgcctagcat
cattattagaagttgaaccaagactgaaagatatactactagttttgata
aactatctagcaagaaagtttgcttagcactgaaaagtaagagatatcat
ggaattttatttgttctttttctttttctttttttttatttagatatttt
ctttatttacatttcacatattaaccccttttctagttccccctctggaa
aatgcctattccctcaccccttcccctgctccccaagccacccactctca
ttctcagtcctgtccttcccctatactggggcatagaaccttcacaggac
ctagggcctctcctcccattgatgaccaacttggccatcctcagctacat
atacagctagagcacatgtcacatgtgttttctttgattgatgtttagtc
aggagctcctggggtactggttagtcatattgatgttcctcctaatggga
actcagaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_65419447_65420540
seq2: B6Ng01-306H20.b_47_1130

seq1  GAATTCAATTATCTCTAGGCATTTTCTTAGAGCTCAGAAGAGGAGCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTATCTCTAGGCATTTTCTTAGAGCTCAGAAGAGGAGCCCTG  50

seq1  GGAAGCAGGCTGCATGAGAGTGGGACCTGATATTGAAAGGAGGATGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGGCTGCATGAGAGTGGGACCTGATATTGAAAGGAGGATGAGTG  100

seq1  CATGCTGCAAGGAGCCATCCTCAGAGGGTGCACCTCTGCTCAGTGCTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGCAAGGAGCCATCCTCAGAGGGTGCACCTCTGCTCAGTGCTACT  150

seq1  CAGTAAGCAGGTGAGAGAGATGGAATATAGCGCGGGTCAGCTGAGACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGCAGGTGAGAGAGATGGAATATAGCGCGGGTCAGCTGAGACCCA  200

seq1  TACATTCAGCTCCCATTCTGCCTCATTTCCTGGGAGGACCCTTAAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCAGCTCCCATTCTGCCTCATTTCCTGGGAGGACCCTTAAGGAGA  250

seq1  TTCAGGACAAGGGTCCCTGAGTTTTAATTCATCTCCATTCTGGAGGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGACAAGGGTCCCTGAGTTTTAATTCATCTCCATTCTGGAGGAAGG  300

seq1  CAACAGAGGGTGTCTGGAAATTTCCCAGCTGTTCGACCACAGGCTGGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAGGGTGTCTGGAAATTTCCCAGCTGTTCGACCACAGGCTGGTCC  350

seq1  TATCCAAATCATCCTGCCCCAGCTGCTTCTTCTATTCCCTGTGCCTGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAATCATCCTGCCCCAGCTGCTTCTTCTATTCCCTGTGCCTGCCC  400

seq1  TGGATGTTTTCTAGTCGAATTTTTCATCATCACCAAGCCATTTGTTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTTTTCTAGTCGAATTTTTCATCATCACCAAGCCATTTGTTTCTG  450

seq1  TTTGTAATTATGCATTTTAATGTTCATTAATTATGGAATGCAAATTGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATTATGCATTTTAATGTTCATTAATTATGGAATGCAAATTGCTC  500

seq1  AGAGTGCAAAATTTGTAATGAGTTGTTCTACCACCCTACCCCCATGTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCAAAATTTGTAATGAGTTGTTCTACCACCCTACCCCCATGTCTA  550

seq1  GAAGGTGGGCCAGCTGTTCTCAGCAGAAATGAAAACAACCAACGTACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGGCCAGCTGTTCTCAGCAGAAATGAAAACAACCAACGTACAAG  600

seq1  ACAATACAACAAAATACCTTCTTCTGAGGCCTGAGTATATTGTAAGGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACAACAAAATACCTTCTTCTGAGGCCTGAGTATATTGTAAGGTAC  650

seq1  ACTATAAAGCTGAGGGGTTTCCTGGTGGCACACAAAAAAGGGGCTTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAAGCTGAGGGGTTTCCTGGTGGCACACAAAAAAGGGGCTTTGTC  700

seq1  TCTCTTGGACCATGGAAGACCTTGGTCTATCACTTTATCTTTTTTATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGGACCATGGAAGACCTTGGTCTATCACTTTATCTTTTTTATTTT  750

seq1  CTATAGGGACCTAGCTTCTTACAGCTCTTGTGTCCTGAACTGGTTGCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGGACCTAGCTTCTTACAGCTCTTGTGTCCTGAACTGGTTGCCTG  800

seq1  ACTTCTCTGACCTGAGATCTTTTTAGATAGGGGACAAGTGAATCATATCC  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTTCTCTGACCTGAGATCTTTTTAGATAGGGGAC-AGTGAATCATATCC  849

seq1  CCAGAAGCCAGGGGAAAAATTCTCTTAGAAACTGGAGTTTCATCTGACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCCAGGGGAAAAATTCTCTTAGAAACTGGAGTTTCATCTGACCC  899

seq1  CACCTTGGCTTCTAACTGGTCAGGTGGCTTTGGCAGAGCAGAAAAGATTT  950
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  CACCTTGGCTTCTAACTGGTCA-GTGGCTTTGGCAGAGCAG-AAAGATTT  947

seq1  G-TTTTCTCCATTATAAAATGAAGACACTGGACAGGTGGAAGTTGG-AGA  998
      | ||||||||||||| ||||||||||||||||||||||  |||||| |||
seq2  GTTTTTCTCCATTAT-AAATGAAGACACTGGACAGGTG--AGTTGGAAGA  994

seq1  AGCTGTTCAGTGCTCATA-TTTTGTCAGAGTTTTGTACAAAGGAGAGAAC  1047
      |||||||||||||||||| |||||||||||||||||||||  ||||| ||
seq2  AGCTGTTCAGTGCTCATATTTTTGTCAGAGTTTTGTACAA--GAGAG-AC  1041

seq1  CATCTTGAAAGCATTTGAGAGGAACTGACTGAACATCAGAG-ACTTTC  1094
      |||||   ||||| ||||||||||||||||| ||||| ||| ||||||
seq2  CATCT--GAAGCA-TTGAGAGGAACTGACTG-ACATC-GAGAACTTTC  1084

seq1: chr4_65598756_65599823
seq2: B6Ng01-306H20.g_65_1124 (reverse)

seq1  GGGTCTGAGTCCCCA-TAGGAGGAACATCAATATGGACTAACCAGTACCC  49
      |||||||||| |||| |||||||||||||||||| |||||||||||||||
seq2  GGGTCTGAGTTCCCATTAGGAGGAACATCAATAT-GACTAACCAGTACCC  49

seq1  CCAGAGCTCCTTGAAACTAAACCATCAATCAAAGAAAACACATGTTGGAA  99
      |  ||||||||    |||||| |||||||||||||||||||||||    |
seq2  CAGGAGCTCCT---GACTAAA-CATCAATCAAAGAAAACACATGT---GA  92

seq1  CATGTGGCTCTAGCTGTATATGTAGCTGAGGATGGCCAAGTTGGTCATCA  149
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGT-GCTCTAGCTGTATATGTAGCTGAGGATGGCCAAGTTGGTCATCA  141

seq1  ATGGGAGGAGAGGCCCTAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGGAGAGGCCCTAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGG  191

seq1  GGAAGGACAGGACTGAGAATGAGAGTGGGTGGCTTGGGGAGCAGGGGAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGACAGGACTGAGAATGAGAGTGGGTGGCTTGGGGAGCAGGGGAAG  241

seq1  GGGTGAGGGAATAGGCATTTTCCAGAGGGGGAACTAGAAAAGGGGTTAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGGGAATAGGCATTTTCCAGAGGGGGAACTAGAAAAGGGGTTAAT  291

seq1  ATGTGAAATGTAAATAAAGAAAATATCTAAATAAAAAAAAAGAAAAAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAATGTAAATAAAGAAAATATCTAAATAAAAAAAAAGAAAAAGAA  341

seq1  AAAGAACAAATAAAATTCCATGATATCTCTTACTTTTCAGTGCTAAGCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAAATAAAATTCCATGATATCTCTTACTTTTCAGTGCTAAGCAA  391

seq1  ACTTTCTTGCTAGATAGTTTATCAAAACTAGTAGTATATCTTTCAGTCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTGCTAGATAGTTTATCAAAACTAGTAGTATATCTTTCAGTCTT  441

seq1  GGTTCAACTTCTAATAATGATGCTAGGCAAAAATGTCAATCAACCTTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAACTTCTAATAATGATGCTAGGCAAAAATGTCAATCAACCTTTTT  491

seq1  AAGATAAAGCTTTTATATGGAAAATGAAAGTAATAACTCCATGGAAGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAGCTTTTATATGGAAAATGAAAGTAATAACTCCATGGAAGTGT  541

seq1  ATTCAAAAAGACCAGCATAATTATATAAAGACTCATAATGGTGCTTCATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAAAGACCAGCATAATTATATAAAGACTCATAATGGTGCTTCATT  591

seq1  TTCAATATATACATAATAAATTACAAATCCTACAACTATCACTTTAGTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATATACATAATAAATTACAAATCCTACAACTATCACTTTAGTAT  641

seq1  TAGTATATGTCTTTATGTCTCATACAAAATGTACCATTACCTCTCTTAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATATGTCTTTATGTCTCATACAAAATGTACCATTACCTCTCTTAAC  691

seq1  CATGTCATTGCCTACAACTCTCGATGCCTATACACAGATGATGAAACTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCATTGCCTACAACTCTCGATGCCTATACACAGATGATGAAACTAC  741

seq1  GTCAAATAGCATGATCTTAAGAGAGAAAAGCCTTTGTAACCAAATCATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATAGCATGATCTTAAGAGAGAAAAGCCTTTGTAACCAAATCATTT  791

seq1  CATGAAATGTAAACAGAAGTATTGTGGCTGTTATTTCAAAGCTTTTTATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATGTAAACAGAAGTATTGTGGCTGTTATTTCAAAGCTTTTTATT  841

seq1  GGAAATGGTTTTAAAAGCTTGTTTCCATTATCTTGCATGCCCAAATAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGTTTTAAAAGCTTGTTTCCATTATCTTGCATGCCCAAATAAAA  891

seq1  GTTAATGATACTCACTAATTCATACTTTCAACAAATTTTGTTTGAGAATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGATACTCACTAATTCATACTTTCAACAAATTTTGTTTGAGAATC  941

seq1  TAATAAAGCTCAGGGCCAAAGAATGGTGAGTTGGGCAAAATTATATATTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGCTCAGGGCCAAAGAATGGTGAGTTGGGCAAAATTATATATTC  991

seq1  TGCAGGCCAGAATGATGCTTCATCAGACTAATTCTAAACTCAAGAAAAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCCAGAATGATGCTTCATCAGACTAATTCTAAACTCAAGAAAAAG  1041

seq1  GCTTAATCTATTGGAATTC  1068
      |||||||||||||||||||
seq2  GCTTAATCTATTGGAATTC  1060