BAC Information

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BAC

Clone NameB6Ng01-306I13
Chromosome4 (Build37)
Map Location 13,241,053 - 13,399,512
singlet/doubletdoublet
Overlap genenone
Upstream geneOTTMUSG00000004461
Downstream geneLOC100039988, Runx1t1, LOC625831, LOC433687, LOC100040030, LOC433688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306I13.bB6Ng01-306I13.g
ACCGA099545GA099546
length1,0991,061
definitionB6Ng01-306I13.b B6Ng01-306I13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,398,412 - 13,399,512)(13,241,053 - 13,242,125)
sequence
gaattccagagactctcgttaaatggcccatggaatgaatcaggcatgga
attaacctatctttagttccctaaagcttatgttccatgaaggagtactc
agattgctttgtgcctacaccttgaaccatttgggaaaaaaattagttct
ttaaagaaactaagcccaaaattctaagcgaactgacccttaagtaacta
aaaacaaggggaaaccagcagcaccagcaagtgttttaaacaactaccaa
gtgagtgtctcctgcagctctgctcactgcgggtggctatggctgtgccc
tgggccttggatgctagttgaaaggcagctgccctgcctcaggctggaag
tcctctgcaggagagcctgcagaaaaagaggtattttggtgcaaagaaag
aataggtactgggttaataactcctattttctcagagctctactgaaatt
caaatagtcttttaattgcttagagttttgtcctttaaatgtggacactg
aactggatttgatgaattttgttgcagtatctttttgccacgcacactca
cacacacaaacacatatacacattatacttgccatatacatatgatgcat
atggatatatggctatcatagaaagagtgggcattacttctttagaagga
ctgtcctggaaacctcttagcatcacttccttttaaagaaattgccattc
actcattctgaaatatcccttaaaagagtctagagtcattgactttgcag
tatatgaatttctgccaaataattttgtaatctgtctagtgttagagaac
tcagacttctatcactcttcagagggctatgcttattagtaagtgtttct
atatgctcagtgtaactttgtaacttattcattataacattcaccaaata
ttctaattatattattaacaccacacagttgaaatccaatcccttctcca
caattgcagcacctatttcaaatctaattggattcatgtaccagcatttc
ctgtatgttgtcaatgatcactcacagcactgtgggtcctcttttccttt
cttttgtgacatgctcatccttattaaaggcaatatagaatacacagac

gaattcaaatgctggtcttgcctttgcttttcagttccttccacagtata
aaaattgttctttcgtcatgatgtagtctttctgggcatctttattttaa
ttctgtaaaatttacattcaggagtaacagcaaatctgctgattacttat
gaaagcaggggataaaaattgcaattacagtcaaaattaaagttattttc
taatcttctcatcttttttaaggaatgagaaattttaaatatggtcaaca
tagcacattttaagtgtcaaacttactgaattttctacaccaattgaata
ataattctcttaaaacagtgaatattacacatatttttcaccatttgacc
tgtttaatataagttgaaagattcctcttgtgtaagtaccattgcataat
gctgtgtgctgagatattaagatatatttagtaattccattagaaccgca
ccatcaagcagggcacagcatatggaaagaagttggtgaaaaactgatta
aacatttatatcaagtacattttgatttaactcacataaataattcattt
ttatgttttctttctttcaaaataaacctttttgacacctgctgtgctaa
aaataatgctagcatgtctgtaataaagaaagtcttgaagcttgcaggaa
tgacatcatctggtacccatgcagatactaaattaccagcacataagtgc
cgaaaagtaagacttggcattatttattatttatttagtgcctcaaaaaa
tatgtcatgcttagatgcaagtgaagcgcctgactcaatttgaatggaaa
gtttgtgtccagaaaaagtaaaaaattaaaaggcttacaaagacacagta
gaaaatgtaggagaagccatggagatattgagccctattctttttatcag
agcatgagacaggagatgagaaatggagacaggacctatgcaacattctt
ccaggagatgtctgaagctacagttgaaacggagacttgtgtcagaggat
aatgcactcacatggctatattctattcattatctagactacagtccaat
aaagatgttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_13398412_13399512
seq2: B6Ng01-306I13.b_49_1147 (reverse)

seq1  GTCTGTGTAATCTAT-TGCCCTTTATAAAGGATGGAGCATGTCAC-AAAG  48
      ||||||||| ||||| |  ||||||  |||||| ||||||||||| ||||
seq2  GTCTGTGTATTCTATATTGCCTTTAATAAGGAT-GAGCATGTCACAAAAG  49

seq1  AAGGGAAAAGA-GACCCACAGTGCTGTTGAGTGATCAATGACAACATACA  97
      || |||||||| |||||||||||||| |||||||||| ||||||||||||
seq2  AAAGGAAAAGAGGACCCACAGTGCTG-TGAGTGATCATTGACAACATACA  98

seq1  GGAAATGCTTGGTACATGAATCCAATTAGATTTGAAATAGGTGCTGCAAT  147
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGC-TGGTACATGAATCCAATTAGATTTGAAATAGGTGCTGCAAT  147

seq1  TGTGGAGAAGGGATTGGATTTCAACTGTGTGGTGTTAATAATATAATTAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGAAGGGATTGGATTTCAACTGTGTGGTGTTAATAATATAATTAG  197

seq1  AATATTTGGTGAATGTTATAATGAATAAGTTACAAAGTTACACCTGAGCA  247
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AATATTTGGTGAATGTTATAATGAATAAGTTACAAAGTTACA-CTGAGCA  246

seq1  TATAGAAACACTTACTAATAAGCATAGCCCTCTGAAGAGTGATAGAAGTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAACACTTACTAATAAGCATAGCCCTCTGAAGAGTGATAGAAGTC  296

seq1  TGAGTTCTCTAACACTAGACAGATTACAAAATTATTTGGCAGAAATTCAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTCTAACACTAGACAGATTACAAAATTATTTGGCAGAAATTCAT  346

seq1  ATACCTGCAAAGTCAATGACTCTAGACTCTTTTAAGGGATATTTCAGAAT  397
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATA-CTGCAAAGTCAATGACTCTAGACTCTTTTAAGGGATATTTCAGAAT  395

seq1  GAGTGAATGGCAATTTCTTTAAAAGGAAGTGATGCTAAGAGGTTTCCAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAATGGCAATTTCTTTAAAAGGAAGTGATGCTAAGAGGTTTCCAGG  445

seq1  ACAGTCCTTCTAAAGAAGTAATGCCCACTCTTTCTATGATAGCCATATAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCTTCTAAAGAAGTAATGCCCACTCTTTCTATGATAGCCATATAT  495

seq1  CCATATGCATCATATGTATATGGCAAGTATAATGTGTATATGTGTTTGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGCATCATATGTATATGGCAAGTATAATGTGTATATGTGTTTGTG  545

seq1  TGTGTGAGTGTGCGTGGCAAAAAGATACTGCAACAAAATTCATCAAATCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGTGTGCGTGGCAAAAAGATACTGCAACAAAATTCATCAAATCC  595

seq1  AGTTCAGTGTCCACATTTAAAGGACAAAACTCTAAGCAATTAAAAGACTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGTGTCCACATTTAAAGGACAAAACTCTAAGCAATTAAAAGACTA  645

seq1  TTTGAATTTCAGTAGAGCTCTGAGAAAATAGGAGTTATTAACCCAGTACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTTCAGTAGAGCTCTGAGAAAATAGGAGTTATTAACCCAGTACC  695

seq1  TATTCTTTCTTTGCACCAAAATACCTCTTTTTCTGCAGGCTCTCCTGCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTCTTTGCACCAAAATACCTCTTTTTCTGCAGGCTCTCCTGCAG  745

seq1  AGGACTTCCAGCCTGAGGCAGGGCAGCTGCCTTTCAACTAGCATCCAAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTCCAGCCTGAGGCAGGGCAGCTGCCTTTCAACTAGCATCCAAGG  795

seq1  CCCAGGGCACAGCCATAGCCACCCGCAGTGAGCAGAGCTGCAGGAGACAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGCACAGCCATAGCCACCCGCAGTGAGCAGAGCTGCAGGAGACAC  845

seq1  TCACTTGGTAGTTGTTTAAAACACTTGCTGGTGCTGCTGGTTTCCCCTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGGTAGTTGTTTAAAACACTTGCTGGTGCTGCTGGTTTCCCCTTG  895

seq1  TTTTTAGTTACTTAAGGGTCAGTTCGCTTAGAATTTTGGGCTTAGTTTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTTACTTAAGGGTCAGTTCGCTTAGAATTTTGGGCTTAGTTTCT  945

seq1  TTAAAGAACTAATTTTTTTCCCAAATGGTTCAAGGTGTAGGCACAAAGCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAACTAATTTTTTTCCCAAATGGTTCAAGGTGTAGGCACAAAGCA  995

seq1  ATCTGAGTACTCCTTCATGGAACATAAGCTTTAGGGAACTAAAGATAGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGTACTCCTTCATGGAACATAAGCTTTAGGGAACTAAAGATAGGT  1045

seq1  TAATTCCATGCCTGATTCATTCCATGGGCCATTTAACGAGAGTCTCTGGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCATGCCTGATTCATTCCATGGGCCATTTAACGAGAGTCTCTGGA  1095

seq1  ATTC  1101
      ||||
seq2  ATTC  1099


seq1: chr4_13241053_13242125
seq2: B6Ng01-306I13.g_69_1129

seq1  GAATTCAAATGCTGGTCTTGCCTTTGCTTTTCAGTTCCTTCCACAGTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGCTGGTCTTGCCTTTGCTTTTCAGTTCCTTCCACAGTATA  50

seq1  AAAATTGTTCTTTCGTCATGATGTAGTCTTTCTGGGCATCTTTATTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTTCTTTCGTCATGATGTAGTCTTTCTGGGCATCTTTATTTTAA  100

seq1  TTCTGTAAAATTTACATTCAGGAGTAACAGCAAATCTGCTGATTACTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAAATTTACATTCAGGAGTAACAGCAAATCTGCTGATTACTTAT  150

seq1  GAAAGCAGGGGATAAAAATTGCAATTACAGTCAAAATTAAAGTTATTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGGGGATAAAAATTGCAATTACAGTCAAAATTAAAGTTATTTTC  200

seq1  TAATCTTCTCATCTTTTTTAAGGAATGAGAAATTTTAAATATGGTCAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTCTCATCTTTTTTAAGGAATGAGAAATTTTAAATATGGTCAACA  250

seq1  TAGCACATTTTAAGTGTCAAACTTACTGAATTTTCTACACCAATTGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACATTTTAAGTGTCAAACTTACTGAATTTTCTACACCAATTGAATA  300

seq1  ATAATTCTCTTAAAACAGTGAATATTACACATATTTTTCACCATTTGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCTCTTAAAACAGTGAATATTACACATATTTTTCACCATTTGACC  350

seq1  TGTTTAATATAAGTTGAAAGATTCCTCTTGTGTAAGTACCATTGCATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATATAAGTTGAAAGATTCCTCTTGTGTAAGTACCATTGCATAAT  400

seq1  GCTGTGTGCTGAGATATTAAGATATATTTAGTAATTCCATTAGAACCGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGCTGAGATATTAAGATATATTTAGTAATTCCATTAGAACCGCA  450

seq1  CCATCAAGCAGGGCACAGCATATGGAAAGAAGTTGGTGAAAAACTGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAGCAGGGCACAGCATATGGAAAGAAGTTGGTGAAAAACTGATTA  500

seq1  AACATTTATATCAAGTACATTTTGATTTAACTCACATAAATAATTCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTATATCAAGTACATTTTGATTTAACTCACATAAATAATTCATTT  550

seq1  TTATGTTTTCTTTCTTTCAAAATAAACCTTTTTGACACCTGCTGTGCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTTCTTTCTTTCAAAATAAACCTTTTTGACACCTGCTGTGCTAA  600

seq1  AAATAATGCTAGCATGTCTGTAATAAAGAAAGTCTTGAAGCTTGCAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGCTAGCATGTCTGTAATAAAGAAAGTCTTGAAGCTTGCAGGAA  650

seq1  TGACATCATCTGGTACCCATGCAGATACTAAATTACCAGCACATAAGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCATCTGGTACCCATGCAGATACTAAATTACCAGCACATAAGTGC  700

seq1  CGAAAAGTAAGACTTGGCATTATTTATTATTTATTTAGTGCCTCAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAGTAAGACTTGGCATTATTTATTATTTATTTAGTGCCTCAAAAAA  750

seq1  TATGTCATGCTTAGATGCAAGTGAAGCGCCTGACTCAATTTGAATGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCATGCTTAGATGCAAGTGAAGCGCCTGACTCAATTTGAATGGAAA  800

seq1  GTTTGTGTCCAGAAAAAGTAAAAAATTAAAAGGCTTACAAAGACACAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTCCAGAAAAAGTAAAAAATTAAAAGGCTTACAAAGACACAGTA  850

seq1  GAAAATGTAGGAGAAAGCCATGGAGATATTGAGCCCTATTC-TTTTATCA  899
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  GAAAATGTAGGAG-AAGCCATGGAGATATTGAGCCCTATTCTTTTTATCA  899

seq1  GAGCATGAGACAAGAGATGAGAAATGGAGACAAGGACCTAATGCAACAT-  948
      |||||||||||| |||||||||||||||||| ||||||| ||||||||| 
seq2  GAGCATGAGACAGGAGATGAGAAATGGAGAC-AGGACCT-ATGCAACATT  947

seq1  -CTCCAGGAGATGTCTGAAGCTACAGTTGAAAGGGAGACTTGTGGTCAAG  997
        |||||||||||||||||||||||||||||| |||||||||| ||| ||
seq2  CTTCCAGGAGATGTCTGAAGCTACAGTTGAAACGGAGACTTGT-GTC-AG  995

seq1  AGGATAATTGCAACTCCACATGGGCTATTATTCTATTCCATTATTCTAGA  1047
      ||||||| ||| ||| ||||| ||||| ||||||||| ||||| ||||||
seq2  AGGATAA-TGC-ACT-CACAT-GGCTA-TATTCTATT-CATTA-TCTAGA  1038

seq1  CTAACAGTTCCCATAAAGGATGTTGT  1073
      || |||| ||| ||||| ||||||||
seq2  CT-ACAG-TCCAATAAA-GATGTTGT  1061


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