BAC Information

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BAC

Clone NameB6Ng01-306O08
Chromosome4 (Build37)4 (Build37)
Map Location 21,063,730 - 21,063,916146,364,536 - 146,365,667
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneE130310K16Rik
Downstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306O08.bB6Ng01-306O08.g
ACCGA099810GA099811
length9301,157
definitionB6Ng01-306O08.b B6Ng01-306O08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,063,730 - 21,063,916)(146,364,536 - 146,365,667)
sequence
gaattcttaggtacatggatgcatctggaggatatcatcctgagtgagat
aatccaatcacaaaaaaccatacatgatatgcactcactgaaaagcagat
attagcccagaaacttagaatatccaagatataatttgcaaagcatgcaa
aacacaaaaagaaggaagacccaagtgtggatacttagatcgttcttaga
aggaggtacaaaatatccatggaaggagttacagagacaaagtttggagc
tgagactgaaggaaggaccatccagagactgccccacccggggatccatc
cccaaaacaaccaccacacccagagactattgcagatgtcaacaagagtt
tgctggcaggacccaaatacagctgtcctctgtgaggatatgccagtgcc
tagcaaatacagaagtggatgttcacagtcatcaattggatggagcacag
agtccccaatgaaggagctagagaaagcacccaaggagctgaaggggtct
gcagccctataggaggaacaacaatatgaactaaccagtaaccccagagc
tccctgggactaaaccaccagtcaaagaaaacaaggttgtactcgtgtct
ctacctgtatatgttacagtgatggcctagtcggccatcaatgggaggag
aggcccttggtcttgcaaagggtctatgtcccaggatagaggaatgccag
gtccaggaagagggagtgggtggcttggggagcagcggagggggaaggga
atacaggattttcggagaagaaacctaggaaaggggatagcatttgaaat
gtaagtgaagaaaatatctaataaaaaatatatttaaaatgtaaagaaag
aatagggtatattagataaacaagtttttctcaactgaggatcttgaatg
gcttgagtagcacttaagaaatgacattct

gaattcatacaggagagaaaccttacaaatgcagtgaatgtgaaaaatgc
tttaatgaaaaaaacattctgaaaattcatcagagaattcatacaggaga
gagaccttacaaatgtcgtgaatgtgacaaatgcttttcccgaaaattcc
atcttggtattcatcagagaattcatacaggaaagaaaccttacaaatgt
agtgaatgtgacaaatgctttactacaaaaggcaatctgataattcatca
gagaattcatacaagagagaaacctcacaaatgtagtgaatgtgacaaat
gctttacccagaaatcccatcttagtattcatcagaaaattcatacagga
gagaaaccttacaaatagattgtatgtgacaaatacaatactcacaatgt
cagtcttagaaatcatcagttatttcatacagtagagaatctttataaat
gaagtgaacgagacaatcctttaccaagatatatcatctcaaaattcatt
agagaatacttagagaagacaaacttttcaaatatattgtaggtatgaat
cctttccttttggcctatttcctagactgtaacagtgaatacttacaggc
tagaaacttaactcatgcattgtatgaagaaatatctttgacttcatttc
aggtcagagagaacatctaagaactttttagggtaaagaattttgttggg
gaaaatgttgtattcttgacaacacttgaggctccacactagagaattag
tatgattatgaaaatcttgtgaaaatattcatgcaatgttcaaatcttag
ataatgtcaactatttatgttgggagaaactctgaaaatgtgaaaatgta
gaaagcttttcatgacacctttttacttgttcaccctcaaacgttataag
atgaagataagttaggaagtcagaagatagtattgtataacactttcatt
gagacagaataatccatttcaaagaactatttaagtctttaatacaaccc
tcaaaatagtaataaaactggtagcattttgtaatattttattgtcctgt
aactaactccaataaaacctgaagattcaccaaaattgccttggctggtt
cgattgcagtggatctctatgcataattgttgcactccaggaaatgcctc
aatataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_21063730_21063916
seq2: B6Ng01-306O08.b_350_538 (reverse)

seq1  AGCTCCTTGGGTACTTTCTCTAGCTCCTTCACTGGGGGCCCTGTGTTCCA  50
      |||||||||||| |||||||||||||||||| ||||| | ||||| ||||
seq2  AGCTCCTTGGGTGCTTTCTCTAGCTCCTTCATTGGGGACTCTGTGCTCCA  50

seq1  ACCAATAGGTAACTGTGAGCATCCACTCCTGTATTTGCCAGGCACTAGCA  100
       ||||| | | ||||||| |||||||| |||||||||| ||||||| |||
seq2  TCCAATTGATGACTGTGAACATCCACTTCTGTATTTGCTAGGCACTGGCA  100

seq1  TAGCCTCAC--AAGAGAGCTATATCAGGGTCTTGTCAGCAAAATCTTGCT  148
      || ||||||  | || |||| |||  ||||| || ||||||| ||||| |
seq2  TATCCTCACAGAGGACAGCTGTATTTGGGTCCTGCCAGCAAACTCTTGTT  150

seq1  GGCATATGCAATAGTGTCTGGGTTTGGTGGTTGTTTTTG  187
      | ||| ||||||||| ||||||| ||||||||||||| |
seq2  GACATCTGCAATAGTCTCTGGGTGTGGTGGTTGTTTTGG  189


seq1: chr4_146364536_146365667
seq2: B6Ng01-306O08.g_106_1223

seq1  GTGAAAAATGCTTTAATGAAAAAAACATTCTGAAAATTCATCAGAGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAATGCTTTAATGAAAAAAACATTCTGAAAATTCATCAGAGAATT  50

seq1  CATACAGGAGAGAGACCTTACAAATGTCGTGAATGTGACAAATGCTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGGAGAGAGACCTTACAAATGTCGTGAATGTGACAAATGCTTTTC  100

seq1  CCGAAAATTCCATCTTGGTATTCATCAGAGAATTCATACAGGAAAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAAATTCCATCTTGGTATTCATCAGAGAATTCATACAGGAAAGAAAC  150

seq1  CTTACAAATGTAGTGAATGTGACAAATGCTTTACTACAAAAGGCAATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAATGTAGTGAATGTGACAAATGCTTTACTACAAAAGGCAATCTG  200

seq1  ATAATTCATCAGAGAATTCATACAAGAGAGAAACCTCACAAATGTAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCATCAGAGAATTCATACAAGAGAGAAACCTCACAAATGTAGTGA  250

seq1  ATGTGACAAATGCTTTACCCAGAAATCCCATCTTAGTATTCATCAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACAAATGCTTTACCCAGAAATCCCATCTTAGTATTCATCAGAAAA  300

seq1  TTCATACAGGAGAGAAACCTTACAAATAGATTGTATGTGACAAATACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACAGGAGAGAAACCTTACAAATAGATTGTATGTGACAAATACAAT  350

seq1  ACTCACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTAGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTAGAGAA  400

seq1  TCTTTATAAATGAAGTGAACGAGACAATCCTTTACCAAGATATATCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATAAATGAAGTGAACGAGACAATCCTTTACCAAGATATATCATCT  450

seq1  CAAAATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTG  500

seq1  TAGGTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACAGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACAGTGAA  550

seq1  TACTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATATCTTT  600

seq1  GACTTCATTTCAGGTCAGAGAGAACATCTAAGAACTTTTTAGGGTAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCATTTCAGGTCAGAGAGAACATCTAAGAACTTTTTAGGGTAAAGA  650

seq1  ATTTTGTTGGGGAAAATGTTGTATTCTTGACAACACTTGAGGCTCCACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTGGGGAAAATGTTGTATTCTTGACAACACTTGAGGCTCCACAC  700

seq1  TAGAGAATTAGTATGATTATGAAAATCTTGTGAAAATATTCATGCAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAATTAGTATGATTATGAAAATCTTGTGAAAATATTCATGCAATGT  750

seq1  TCAAATCTTAGATAATGTCAACTATTTATGTTGGGAGAAACTCTGAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCTTAGATAATGTCAACTATTTATGTTGGGAGAAACTCTGAAAAT  800

seq1  GTGAAAATGTAGAAAGCTTTTCATGACACCTTTTTACTTGTTCACCCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATGTAGAAAGCTTTTCATGACACCTTTTTACTTGTTCACCCTCA  850

seq1  AACGTTATAAGATGAAGATAAGTTAGGAAGTCAGAAGATAGTATTGTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTATAAGATGAAGATAAGTTAGGAAGTCAGAAGATAGTATTGTATA  900

seq1  ACACTTTCATTGAGACAGAAATAATCCATTTCAAAAGGAAACTATTTAAG  950
      |||||||||||||||||| ||||||||||||||||    |||||||||| 
seq2  ACACTTTCATTGAGACAG-AATAATCCATTTCAAA---GAACTATTTAA-  945

seq1  GTCTTTAATACAACCCTCAAAATAGGTAATAAAACTGGTAGCATTTTGTA  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTCTTTAATACAACCCTCAAAATA-GTAATAAAACTGGTAGCATTTTGTA  994

seq1  TATTTTTATTGTCCTGTAACTAACTCCAATAAAACTGAAAGATTCAACAA  1050
         ||||||||||||||||||||||||||||||||   |||||||| |||
seq2  ATATTTTATTGTCCTGTAACTAACTCCAATAAAACCTGAAGATTCACCAA  1044

seq1  ATTTGCTTTGGTTGTTTCCAATTTGCAGTTGGGATACTCAGATGAATATA  1100
      | |||| |||| || ||| |  |||||||  |||| |||  ||| |||  
seq2  AATTGCCTTGGCTGGTTCGA--TTGCAGT--GGAT-CTC-TATGCATAAT  1088

seq1  TGTTGCACCTTCCCAGGAAATGCCTCAA-ATAA  1132
      ||||||||    |||||||||||||||| ||||
seq2  TGTTGCAC---TCCAGGAAATGCCTCAATATAA  1118


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