BAC Information

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BAC

Clone NameB6Ng01-306O16
Chromosome4 (Build37)
Map Location 137,161,666 - 137,327,680
singlet/doubletdoublet
Overlap geneUsp48, Rap1gap, Akp2
Upstream geneLOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2
Downstream geneEce1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306O16.bB6Ng01-306O16.g
ACCGA099826GA099827
length784566
definitionB6Ng01-306O16.b B6Ng01-306O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,161,666 - 137,162,445)(137,327,110 - 137,327,680)
sequence
gaattcctttgtgggcttgactaacctgggagccacctgctacgtcaaca
cctttctccaggtgtggttcctcaacttggagcttcggcaggcgctgtac
ttatgccccagcacctgcagtgattacacgaagggagatgggatccatgg
gggaaaaggtatgtgagggaacggggcacaggggcttcctcctgaggggg
ttgccagccagttctcttatgagcctgctacaaagcaggaaataggagtg
ttggttcatgccaagggcaatgctggaaacatactgggattccaaaatac
atcaaccaataagtgaagcttttttaaaaattattcttctctagtgaaag
gccattgcctgtcctcccccaaaaaaactttttttttttttctttttttg
gtttttcgagacagggtttctctgtgtagccctggctgtcctggaactca
ctctgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcct
cccgagtgctgggattaaaggcgtgcgccaccacgcccggcaccaaaaaa
acttttaacaatttgtttctttggttggagagatggctcagctgttcaga
gcacttgctattcttgtaatggaccccgggtcccaggtttccagtattgg
tgactcctcttccagggagtccagtgcgctttaccagtaccaagcacaca
cacggaacacaaacatatttgaagccaaaacactcacacatgtaaaataa
aaatacagcattttgggggctggagagatggctc
ccattctaaggcacaatgtcaaggcacattgtgaccattggtctagcaca
ccaccgtgggtttcagtttttgagtcaggagctcatgtagtccaggttgg
ctttgaactgactggagagacagcaagcgctggggccgacagacctaaga
caccacgccctgctggattagctcattaccagcccatgttcctgcctctc
tcgcccccactactaagagcctcacacaccccagctgctgagagcccgac
agctggtcacaagctcgatcggaatgtgggaaggatgctgtggaggcccc
gctgccagctaccagcatctgtgcactccctgtgtgtgctagctgggact
ctgcttgtgtcggggcccacccagcgcgttacaagttcaaggccagtttc
catagccagggctgcctcagcctcctccccagggttgtctcaggactaac
caggtcctcccagggggaacacagccaggacagagctgggggtggggagg
gtgtctcagagtcctaggaggatggactgaagctggagattgtgggagat
gtagggtgttttctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_137161666_137162445
seq2: B6Ng01-306O16.b_48_831

seq1  GAATTCCTTTGTGGGCTTGACTAACCTGGGAGCCACCTGCTACGTCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGTGGGCTTGACTAACCTGGGAGCCACCTGCTACGTCAACA  50

seq1  CCTTTCTCCAGGTGTGGTTCCTCAACTTGGAGCTTCGGCAGGCGCTGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCCAGGTGTGGTTCCTCAACTTGGAGCTTCGGCAGGCGCTGTAC  100

seq1  TTATGCCCCAGCACCTGCAGTGATTACACGAAGGGAGATGGGATCCATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCCCAGCACCTGCAGTGATTACACGAAGGGAGATGGGATCCATGG  150

seq1  GGGAAAAGGTATGTGAGGGAACGGGGCACAGGGGCTTCCTCCTGAGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAGGTATGTGAGGGAACGGGGCACAGGGGCTTCCTCCTGAGGGGG  200

seq1  TTGCCAGCCAGTTCTCTTATGAGCCTGCTACAAAGCAGGAAATAGGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGCCAGTTCTCTTATGAGCCTGCTACAAAGCAGGAAATAGGAGTG  250

seq1  TTGGTTCATGCCAAGGGCAATGCTGGAAACATACTGGGATTCCAAAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCATGCCAAGGGCAATGCTGGAAACATACTGGGATTCCAAAATAC  300

seq1  ATCAACCAATAAGTGAAGCTTTTTTAAAAATTATTCTTCTCTAGTGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACCAATAAGTGAAGCTTTTTTAAAAATTATTCTTCTCTAGTGAAAG  350

seq1  GCCATTGCCTGTCCTCCCCCAAAAAAACTTTTTTTTTTTTTCTTTTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGCCTGTCCTCCCCCAAAAAAACTTTTTTTTTTTTTCTTTTTTTG  400

seq1  GTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCA  450

seq1  CTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCT  500

seq1  CCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCACCAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCACCAAAAAA  550

seq1  ACTTTTAACAATTTG-TTCTTTGGTTGGAGAGATGGCTCAGCTGTTCAGA  599
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACTTTTAACAATTTGTTTCTTTGGTTGGAGAGATGGCTCAGCTGTTCAGA  600

seq1  GCACTTGCTATTCTTGTAATGGA-CCCGGGT-CCAGGTTTCCAGTATTGG  647
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  GCACTTGCTATTCTTGTAATGGACCCCGGGTCCCAGGTTTCCAGTATTGG  650

seq1  TGACTCCTCTTCCAGGGAGTCCAGTGCGCTTTACCAGTACCAAGCACACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCTCTTCCAGGGAGTCCAGTGCGCTTTACCAGTACCAAGCACACA  700

seq1  CACGGAACACAAACATATTTGAAGCCAAAACACTCACACATGTAAAATAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAACACAAACATATTTGAAGCCAAAACACTCACACATGTAAAATAA  750

seq1  AAATACAGCATTTT-GGGGCTGGAGAGATGGCTC  780
      |||||||||||||| |||||||||||||||||||
seq2  AAATACAGCATTTTGGGGGCTGGAGAGATGGCTC  784

seq1: chr4_137327110_137327680
seq2: B6Ng01-306O16.g_68_639 (reverse)

seq1  CTAG-ATACACCCTACTTCTCCCACAATCTCCAGCTTCAGTCCATCCTCC  49
      |||| | ||||||||| |||||||||||||||||||||||||||||||||
seq2  CTAGAAAACACCCTACATCTCCCACAATCTCCAGCTTCAGTCCATCCTCC  50

seq1  TAGGACTCTGAGACACCCTCCCCACCCCCAGCTCTGTCCTGGCTGTGTTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTCTGAGACACCCTCCCCACCCCCAGCTCTGTCCTGGCTGTGTTC  100

seq1  CCCCTGGGAGGACCTGGTTAGTCCTGAGACAACCCTGGGGAGGAGGCTGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGGAGGACCTGGTTAGTCCTGAGACAACCCTGGGGAGGAGGCTGA  150

seq1  GGCAGCCCTGGCTATGGAAACTGGCCTTGAACTTGTAACGCGCTGGGTGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCCTGGCTATGGAAACTGGCCTTGAACTTGTAACGCGCTGGGTGG  200

seq1  GCCCCGACACAAGCAGAGTCCCAGCTAGCACACACAGGGAGTGCACAGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGACACAAGCAGAGTCCCAGCTAGCACACACAGGGAGTGCACAGAT  250

seq1  GCTGGTAGCTGGCAGCGGGGCCTCCACAGCATCCTTCCCACATTCCGATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTAGCTGGCAGCGGGGCCTCCACAGCATCCTTCCCACATTCCGATC  300

seq1  GAGCTTGTGACCAGCTGTCGGGCTCTCAGCAGCTGGGGTGTGTGAGGCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGTGACCAGCTGTCGGGCTCTCAGCAGCTGGGGTGTGTGAGGCTC  350

seq1  TTAGTAGTGGGGGCGAGAGAGGCAGGAACATGGGCTGGTAATGAGCTAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGTGGGGGCGAGAGAGGCAGGAACATGGGCTGGTAATGAGCTAAT  400

seq1  CCAGCAGGGCGTGGTGTCTTAGGTCTGTCGGCCCCAGCGCTTGCTGTCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGGGCGTGGTGTCTTAGGTCTGTCGGCCCCAGCGCTTGCTGTCTC  450

seq1  TCCAGTCAGTTCAAAGCCAACCTGGACTACATGAGCTCCTGACTCAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCAGTTCAAAGCCAACCTGGACTACATGAGCTCCTGACTCAAAAA  500

seq1  CTGAAACCCACGGTGGTGTGCTAGACCAATGGTCACAATGTGCCTTGACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCCACGGTGGTGTGCTAGACCAATGGTCACAATGTGCCTTGACA  550

seq1  TTGTGCCTTAGAATGGGAATTC  571
      ||||||||||||||||||||||
seq2  TTGTGCCTTAGAATGGGAATTC  572