BAC Information

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BAC

Clone NameB6Ng01-307I02
Chromosome4 (Build37)5 (Build37)
Map Location 145,885,950 - 145,886,879121,965,069 - 121,965,292
singlet/doubletsingletsinglet
Overlap geneRex2
Upstream geneTnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791
Downstream geneLOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307I02.bB6Ng01-307I02.g
ACCGA100260GA100261
length878959
definitionB6Ng01-307I02.b B6Ng01-307I02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,885,950 - 145,886,879)(121,965,069 - 121,965,292)
sequence
gaattctacgatgaatactaagatgggatggttgggtaaagcatttgtca
cactcactgcatttgtaaggtttctctcctgtatgaattctctgatgaac
tctcagactgcctttgtcagtaaagcatttgtcacattcattacatttgt
aaggtttctctcctgtatgaattttctgatgctttctcagagtgcatttg
tcagtaaagcatttgtcgcattcactacatttgtaaggtttctctcctga
atgaattgtatgatgaatactaagatgggaaggttgggtaaagcatttgt
cactttcactatatttgtaagatttctttcctggataaattctctgctga
ctttgaagattgtcaccctgagtaaagcatttgtcaaattcaccacaagt
gtaagtgttcatttcactattgttttgtctcacaatgggtttatgtttag
aaaccaaaacctcatcaagatttttatttctgttgtgttctttcttctct
acgtgggttccttgattgagactaatgatagaagacccctttaaacagtt
tacacagtctttatatgtgcaaacttgtttagtggtcccagttttaagtc
tttttaggtttgaggattggagagtggcatctctgtggttagtttttatg
aggtgtacttttcggaggattcatgaattacattgctagactcattacat
tttaaaagactttctcttggatatgcccatgctcattgaaaatgtgctgt
gtgtctttgttcctcgaccttctccttctcatagttttctacatattgca
gtgatttttctgaaaaaaaggaagaattagggataaccagggaattactt
atatgatggagtaatgtattgatcccat
gaattccatgaattcattcttttttgtttttgtttttggtggttttgttt
gtttgttgtttcgagacagggtttctctgtgtagtcctggcttgtcctgg
aactcactctgtagatcaggctggcctcaaactcagaaatccgcctgcct
ctgcctcccaagtgctgggattaaaggcatatgccaccatgcctggaaat
tcattctttttaattgctgagtagtcccctatctgatttaggattgataa
agatcttttcccaatatgttgctggtcttttttaattatggacagtgtct
tttgccttacagaagctttgcaatttttttaaaaagatttattttatttt
attatatgtgtgtacactgtagctgtcttcagacactccggaagagggtg
tcagatcttgttacggatggttgtgagccaccatgtggttgctgggattt
gaactcaggaccttcagaagagcagtcggtgctcttaaccactgagccat
ctcaccagcccagctttgcaattttatgaggtcccatttgttaattcttg
atcttacagcacaagccattgctgatctgtttaggaattttccccctgtg
cccatatcttcgaggcttttccctactttctcctcttaatttcagtgtct
ctggtcttttgtggaggtctttgatccacttagacttgagctttgtacaa
ggagataagaatggattaattcgtattcttctacatgataaccaccagtt
gtgccggcaccatttgttcaaaatgctgtcttttttccactggatggttt
tagctcccttgtcaaagatcaagtgacccattggtgtgttgggttcattt
ctgggtcttcaattctatttcattgatttccctgtttgtccctgtaccag
gaccttccggtttttatcacaatcgctctgtagttatcgcttcaccagag
gttcttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145885950_145886879
seq2: B6Ng01-307I02.b_47_924 (reverse)

seq1  ATTGGATC-ATAC-TTACTCC-TCATATAAGTAA-TCCCT-GTTATCCCT  45
      || ||||| |||| ||||||| |||||||||||| ||||| |||||||||
seq2  ATGGGATCAATACATTACTCCATCATATAAGTAATTCCCTGGTTATCCCT  50

seq1  AATTC-CCCCTTTTTTCAG-AAAATCACTGC-ATATGT-GGAAACTATGA  91
      |||||  || ||||||||| ||||||||||| |||||| | |||||||||
seq2  AATTCTTCCTTTTTTTCAGAAAAATCACTGCAATATGTAGAAAACTATGA  100

seq1  GAAGGAGAAGGTCTTGGAAC-AAGACACACAGCACATTGTCAATGAGCAT  140
      |||||||||||||  ||||| ||||||||||||||||| |||||||||||
seq2  GAAGGAGAAGGTCGAGGAACAAAGACACACAGCACATTTTCAATGAGCAT  150

seq1  GGGCATAACCGAAAG-AAGTCTTCT-AAATGTAATGAGCTTAGAAATGTG  188
      ||||||| || | || ||||||| | ||||||||||||  ||| ||||| 
seq2  GGGCATATCCAAGAGAAAGTCTTTTAAAATGTAATGAGTCTAGCAATGTA  200

seq1  ATCCATGAATCCTCCG-AAAGTACACCTTAT-AACACTAACCACAGAGAT  236
      || ||||||||||||| ||||||||||| || || |||||||||||||||
seq2  ATTCATGAATCCTCCGAAAAGTACACCTCATAAAAACTAACCACAGAGAT  250

seq1  GCCACTCTCCAATCCTCAAACCTAAAAAGACATAAAACTGGGACCACTAA  286
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCCACTCTCCAATCCTCAAACCTAAAAAGACTTAAAACTGGGACCACTAA  300

seq1  AGGAGTTTGCACATATAAAGACTGTGTAAACTGTTTAAAGGGGTCTTCTA  336
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTGCACATATAAAGACTGTGTAAACTGTTTAAAGGGGTCTTCTA  350

seq1  TCATTAGTCTCAATCAAGGAACCCACATAGAGAAGAAAGAACACAACAGA  386
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCATTAGTCTCAATCAAGGAACCCACGTAGAGAAGAAAGAACACAACAGA  400

seq1  AATAAAAATCTTGATGAGGTTTTGGTTTCT------------------AG  418
      ||||||||||||||||||||||||||||||                  ||
seq2  AATAAAAATCTTGATGAGGTTTTGGTTTCTAAACATAAACCCATTGTGAG  450

seq1  ACAAAACAATAGTGAAATGAACACTTACACTTGTGGTGAATTTGACAAAT  468
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAATAGTGAAATGAACACTTACACTTGTGGTGAATTTGACAAAT  500

seq1  GCTTTACTCAGAGTGACAATCTTCAAAGTCAGCAGAGAATTTATCCAGGA  518
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACTCAGGGTGACAATCTTCAAAGTCAGCAGAGAATTTATCCAGGA  550

seq1  AAGAAATCTTACAAATATAGTGAAAGTGACAAATGCTTTACCCAAACTTC  568
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGAAATCTTACAAATATAGTGAAAGTGACAAATGCTTTACCCAACCTTC  600

seq1  CCATCTTAGTATTCATCATACAATTCATTCAGGAGAGAAACCTTACAAAT  618
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTAGTATTCATCATACAATTCATTCAGGAGAGAAACCTTACAAAT  650

seq1  GTAGTGAATGCGACAAATGCTTTACTGACAAATGCACTCTGAGAAAGCAT  668
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGAATGCGACAAATGCTTTACTGACAAATGCACTCTGAGAAAGCAT  700

seq1  CAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGCGACAA  718
      |||| |||||||||||||||||||||||||                    
seq2  CAGAAAATTCATACAGGAGAGAAACCTTAC--------------------  730

seq1  ATGCTTTACTGACAAATGCACTCTGAGAAAGCATCAGAGAATTCATACAG  768
                                                        
seq2  --------------------------------------------------  730

seq1  GAGAGAAACCTTATAAATGTAATGAATGTGACAAATGCTTTACTGACAAA  818
                    ||||||||||||||||||||||||||||||||||||
seq2  --------------AAATGTAATGAATGTGACAAATGCTTTACTGACAAA  766

seq1  GGCAGTCTGAGAGTTCATCAGAGAATTCATACAGGAGAGAAACCTTACAA  868
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCTGAGAGTTCATCAGAGAATTCATACAGGAGAGAAACCTTACAA  816

seq1  ATGCAGTGAGTGTGACAAATGCTTTACCCAACCATCCCATCTTAGTATTC  918
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTGAGTGTGACAAATGCTTTACCCAACCATCCCATCTTAGTATTC  866

seq1  ATCGTAGAATTC  930
      ||||||||||||
seq2  ATCGTAGAATTC  878

seq1: chr5_121965069_121965292
seq2: B6Ng01-307I02.g_158_576

seq1  --------------------------------------------------  0
                                                        
seq2  TGTCCTGGAACTCACTCTGTAGATCAGGCTGGCCTCAAACTCAGAAATCC  50

seq1  --------------------------------------------------  0
                                                        
seq2  GCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATATGCCACCATGC  100

seq1  --------------------------------------------------  0
                                                        
seq2  CTGGAAATTCATTCTTTTTAATTGCTGAGTAGTCCCCTATCTGATTTAGG  150

seq1  ------------------------TG-TCCTGGAACTCACTCTGTA-GAC  24
                              || | ||||   |   |   || |  
seq2  ATTGATAAAGATCTTTTCCCAATATGTTGCTGGTCTTTTTTAATTATGGA  200

seq1  CAGGCT------CCACACAGA--CTTT----TTTTTTT---AAGATTTAT  59
      |||  |      ||  |||||  ||||    |||||||   |||||||||
seq2  CAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTTTTAAAAAGATTTAT  250

seq1  TTTA--TTAATATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGA  107
      ||||  ||| |||||||  |||||||||||||||||||||||||||| ||
seq2  TTTATTTTATTATATGTGTGTACACTGTAGCTGTCTTCAGACACTCCGGA  300

seq1  AGA---AGTCAGATCTTGTTGCGGATGGTTGTGAGCCACCATGTGGTTGC  154
      |||    ||||||||||||| |||||||||||||||||||||||||||||
seq2  AGAGGGTGTCAGATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGC  350

seq1  TGGGATTTGAACTCTGGACTTTCAGAAGAGCAGTCGTGTGCTCTTACCCA  204
      |||||||||||||| |||| |||||||||||||||| ||||||||| |||
seq2  TGGGATTTGAACTCAGGACCTTCAGAAGAGCAGTCG-GTGCTCTTAACCA  399

seq1  CTGAGCCATCCCACCAGCCC  224
      |||||||||| |||||||||
seq2  CTGAGCCATCTCACCAGCCC  419