BAC Information

Click to search

BAC

Clone NameB6Ng01-308A24
Chromosome4 (Build37)
Map Location 146,364,571 - 146,483,551
singlet/doubletdoublet
Overlap geneLOC100043034, LOC666514, LOC100041561
Upstream gene1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498
Downstream geneLOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308A24.bB6Ng01-308A24.g
ACCGA100662GA100663
length8731,059
definitionB6Ng01-308A24.b B6Ng01-308A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,482,680 - 146,483,551)(146,364,571 - 146,365,381)
sequence
gaattctctttactctagctgtagataaccaaaggtttagaattatacaa
aagatagcaatcttaaataacaacacctatgttgatttatacattaagta
ttgatgtttctaattttaactattatctaaaaagttctatagtgcaatta
tccagcctttttaaaaatcattaaagaatgtttgtattttacaaataaaa
agggaagacaatactaaagtgattggaggtgtcatttccagccacttaaa
tatgagtaagatagctcatacagtacaaataactataaacacagggaaat
atagtcaatctaggtaaatatgtacattttggttattttaaatacatctt
tccttcatttgttagcttcactccattaggtcaaattgtgtctttaatta
tttgattgtagatatagtcatcccagttcatgtgctatgtcagataaaga
gcataagaaaatcattcagatctgcatcatgagcagatggtttaacatca
tccaggattttgtttcttagtggcctttacctgttacaggatatttgatt
attgtatgtagaaacgctaattattagcaaaatgtcaaagcttaaatagg
tacagcattatgcagttgctgttaggtgtgttctgaagagatgcagttta
ggcgtgcctctaaaagcctccatagataagaatgctaatgcagggaaagt
ccctgtccatgttaaggcaagtttgcttgggagaaggcttgtgtttcttg
atgtgtgaccccagacaaagtcagctgggtgctctagagctaactcacta
taaacttgaaatgatttagcaactactgacttggcttggagcctccccat
ccaagggtgtaggggaggaggta
gaattcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatgc
tttacccaacaatcctatcttagtattcatcagagaattcatacaggaga
gaaaccttacaaatgcagtgaatgtgacaaatgctttaccaaacaatcca
atcttagtattcatcagagaattcatacaggagagaaaccttacaaatgc
agtgaatgtgacaaatgctttacccaacaatcccatcttagtattcatca
gagaattcatacaggagagagaccttacaaatgtagtgaatgtgacaaat
gctttacccaaaaatcctatcttaatattcatcagagaattcatgcagga
gagaaaccttacaaatgcagtgaatgtgacaaatgctttactacaaaagg
caatctgataattcatcagagaattcatacaagagagaaaccttacaaat
gtagtgaatgtgacaaatgctttacccagaaatcccaacttagtattcat
cagaaaattcatacaggagagaaaccttacaaatagattgtatgtgacaa
atacaatactcacaatgtcagtcttagaaatcatcagttatttcatacag
tagagaatctttataaatgaagtaaatgaggcaatcctttaccaagatat
atcatctcaaaattcattagagaatacttagagaagacaaacttttcaaa
tatattttaggtatgaatcctttccttttggcctagttcctagactgtaa
cagtgaatacttacagggtagaaacttaactcatgcattgtatgaagaaa
tagctttgacttcatttcagtcagagagaacatctaagaactttttaggg
taaagtatttctgttggggaaaatgttgtattcttgacaacacttgaggc
ctccacactagagaattagtatgattatgaaaattcttgtgaaaatattc
ttgcaatgtccaaatcttagataatgtcaactatttattgttgggagaaa
ctctgaaatgtgaaatgtagaaggcatttcattgacacctttttttaact
tgtctcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146482680_146483551
seq2: B6Ng01-308A24.b_44_916 (reverse)

seq1  TACCTCCTCCCCTACACCCTTGGATGGGGAGGCTCCAAGCCAAGTCAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCTCCCCTACACCCTTGGATGGGGAGGCTCCAAGCCAAGTCAGTA  50

seq1  GTTGCTAAATCATTTCAAGTTTATAGTGAGTTAGCTCTAGAGCACCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTAAATCATTTCAAGTTTATAGTGAGTTAGCTCTAGAGCACCCAGC  100

seq1  TGACTTTGTCTGGGGTCACACATCAAGAAACACAAGCCTTCTCCCAAGC-  149
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGACTTTGTCTGGGGTCACACATCAAGAAACACAAGCCTTCTCCCAAGCA  150

seq1  AACTTGCCTTAACATGGACAGGGACTTTCCCTGCATTAGCATTCTTATCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCCTTAACATGGACAGGGACTTTCCCTGCATTAGCATTCTTATCT  200

seq1  ATGGAGGCTTTTAGAGGCACGCCTAAACTGCATCTCTTCAGAACACACCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGCTTTTAGAGGCACGCCTAAACTGCATCTCTTCAGAACACACCT  250

seq1  AACAGCAACTGCATAATGCTATACCTATTTAAGCTTTGACATTTTGCTAA  299
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AACAGCAACTGCATAATGCTGTACCTATTTAAGCTTTGACATTTTGCTAA  300

seq1  TAATTAGTGTTTCTACATACAATAATCAAATATCCTGTAACAGGTAAAGG  349
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGCGTTTCTACATACAATAATCAAATATCCTGTAACAGGTAAAGG  350

seq1  CCACTAAGAAACAAAATCCTGGATGATGTTAAACCATCTGCTCATGATGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAGAAACAAAATCCTGGATGATGTTAAACCATCTGCTCATGATGC  400

seq1  AGATCTGAATGATTTTCTTATGCTCTTTATCTGACATAGCACATGAACTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGAATGATTTTCTTATGCTCTTTATCTGACATAGCACATGAACTG  450

seq1  GGATGACTATATCTACAATCAAATAATTAAAGACACAATTTGACCTAATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACTATATCTACAATCAAATAATTAAAGACACAATTTGACCTAATG  500

seq1  GAGTGAAGCTAACAAATGAAGGAAAGATGTATTTAAAATAACCAAAATGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAGCTAACAAATGAAGGAAAGATGTATTTAAAATAACCAAAATGT  550

seq1  ACATATTTACCTAGATTGACTATATTTCCCTGTGTTTATAGTTATTTGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTACCTAGATTGACTATATTTCCCTGTGTTTATAGTTATTTGTA  600

seq1  CTGTATGAGCTATCTTACTCATATTTAAGTGGCTGGAAATGACACCTCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGAGCTATCTTACTCATATTTAAGTGGCTGGAAATGACACCTCCA  650

seq1  ATCACTTTAGTATTGTCTTCCCTTTTTATTTGTAAAATACAAACATTCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTTAGTATTGTCTTCCCTTTTTATTTGTAAAATACAAACATTCTT  700

seq1  TAATGATTTTTAAAAAGGCTGGATAATTGCACTATAGAACTTTTTAGATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATTTTTAAAAAGGCTGGATAATTGCACTATAGAACTTTTTAGATA  750

seq1  ATAGTTAAAATTAGAAACATCAATACTTAATGTATAAATCAACATAGGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAAAATTAGAAACATCAATACTTAATGTATAAATCAACATAGGTG  800

seq1  TTGTTATTTAAGATTGCTATCTTTTGTATAATTCTAAACCTTTGGTTATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTTAAGATTGCTATCTTTTGTATAATTCTAAACCTTTGGTTATC  850

seq1  TACAGCTAGAGTAAAGAGAATTC  872
      |||||||||||||||||||||||
seq2  TACAGCTAGAGTAAAGAGAATTC  873

seq1: chr4_146364571_146365381
seq2: B6Ng01-308A24.g_311_1127

seq1  ATTCATCAGAGAATTCATACAGGAGAGAGACCTTACAAATGTCGTGAATG  50
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTCATCAGAGAATTCATACAGGAGAGAGACCTTACAAATGTAGTGAATG  50

seq1  TGACAAATGCTTTTCCCGAAAATTCCATCTTGGTATTCATCAGAGAATTC  100
      ||||||||||||| ||| ||||| | |||||  |||||||||||||||||
seq2  TGACAAATGCTTTACCCAAAAATCCTATCTTAATATTCATCAGAGAATTC  100

seq1  ATACAGGAAAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACT  150
      || ||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  ATGCAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACT  150

seq1  ACAAAAGGCAATCTGATAATTCATCAGAGAATTCATACAAGAGAGAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGGCAATCTGATAATTCATCAGAGAATTCATACAAGAGAGAAACC  200

seq1  TCACAAATGTAGTGAATGTGACAAATGCTTTACCCAGAAATCCCATCTTA  250
      | ||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTACAAATGTAGTGAATGTGACAAATGCTTTACCCAGAAATCCCAACTTA  250

seq1  GTATTCATCAGAAAATTCATACAGGAGAGAAACCTTACAAATAGATTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCATCAGAAAATTCATACAGGAGAGAAACCTTACAAATAGATTGTA  300

seq1  TGTGACAAATACAATACTCACAATGTCAGTCTTAGAAATCATCAGTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAAATACAATACTCACAATGTCAGTCTTAGAAATCATCAGTTATT  350

seq1  TCATACAGTAGAGAATCTTTATAAATGAAGTGAACGAGACAATCCTTTAC  400
      ||||||||||||||||||||||||||||||| || ||| |||||||||||
seq2  TCATACAGTAGAGAATCTTTATAAATGAAGTAAATGAGGCAATCCTTTAC  400

seq1  CAAGATATATCATCTCAAAATTCATTAGAGAATACTTAGAGAAGACAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATATATCATCTCAAAATTCATTAGAGAATACTTAGAGAAGACAAAC  450

seq1  TTTTCAAATATATTGTAGGTATGAATCCTTTCCTTTTGGCCTATTTCCTA  500
      |||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  TTTTCAAATATATTTTAGGTATGAATCCTTTCCTTTTGGCCTAGTTCCTA  500

seq1  GACTGTAACAGTGAATACTTACAGGCTAGAAACTTAACTCATGCATTGTA  550
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GACTGTAACAGTGAATACTTACAGGGTAGAAACTTAACTCATGCATTGTA  550

seq1  TGAAGAAATATCTTTGACTTCATTTCAGGTCAGAGAGAACATCTAAGAAC  600
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  TGAAGAAATAGCTTTGACTTCATTTCA-GTCAGAGAGAACATCTAAGAAC  599

seq1  TTTTTAGGGTAAAGAATTT-TGTTGGGGAAAATGTTGTATTCTTGACAAC  649
      |||||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  TTTTTAGGGTAAAGTATTTCTGTTGGGGAAAATGTTGTATTCTTGACAAC  649

seq1  ACTTGAGG-CTCCACACTAGAGAATTAGTATGATTATGAAAA-TCTTGTG  697
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  ACTTGAGGCCTCCACACTAGAGAATTAGTATGATTATGAAAATTCTTGTG  699

seq1  AAAATATTCATGCAATGTTCAAATCTTAGATAATGTCAACTATTTA-TGT  746
      ||||||||| |||||||| ||||||||||||||||||||||||||| |||
seq2  AAAATATTCTTGCAATGTCCAAATCTTAGATAATGTCAACTATTTATTGT  749

seq1  TGGGAGAAACTCTGAAAATGTGAAAATGTAGAAAGCTTTTCA-TGACACC  795
      |||||||||||||| ||||||| |||||||||| || ||||| |||||||
seq2  TGGGAGAAACTCTG-AAATGTG-AAATGTAGAAGGCATTTCATTGACACC  797

seq1  TTTTT---ACTTGT-TCACC  811
      |||||   |||||| |||||
seq2  TTTTTTTAACTTGTCTCACC  817