BAC Information

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BAC

Clone NameB6Ng01-308B17
Chromosome4 (Build37)
Map Location 145,941,615 - 145,942,791
singlet/doubletsinglet
Overlap geneLOC630093
Upstream geneLOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461
Downstream geneOTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308B17.bB6Ng01-308B17.g
ACCGA100695GA100696
length1,1891,173
definitionB6Ng01-308B17.b B6Ng01-308B17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttagaccttcagtatacagacatacacatagagccattgttggg
ctagatggactatagcctgtcagtccttctaataaatcatgtgtgtgtgt
gtgtgtcagagagagtcattctataaattgttactctaggaaatgcagaa
taatataacaatattccttcttaaatgctccccacacatacacacacttt
tttttttcttttctcctgaaaaatcgcctggagatgctaggaaggaaact
tgtttagaatcagtttcatgtgctacttttgggattgactttctcagctt
ttaccctgagactgtcttctacatgtttgtacatatataaggatgctcca
gaaactgggtgagccaataaacttcatcctgtgaatgttaactttagcag
ctgcgtctccagagactgactgactagaattttagtactgagggaagatt
ggaatgttcctgtcccaaagggtaattagcttatgttgagctagttctag
cttccaaaacaaacaccctttgtctacctctgtgtctgaattaatgccct
gtgactaagagataaaaacattttagagtttattaattcagcaaaccact
agcacctatcaatcccaaagctaaggagtgtcaccaaacagcatctaagg
ctaatagacaatgtattttaaacatgtcctgattaacctaattctgtgtt
cctgagctgtgttttcttagttagggtttccattgctgtaaagagacact
atgactaaagccactcttataaggacaaacatttgattggggttagctta
cagtttcagaggttcagtctattatcatcacagcaggtagcacggcagaa
tccaggcagacaaggtgctggagaaggagcagagagttctgcatcttgac
ctgactgcatccaggagagactgtcgcccaggcagctaggaggagggtct
cattgtccacccccacagtgacacacttcctccaacaaagccatacctcc
taatagtgccacctctctaggacagcatattcaaaccaccacagttgtta
cgtttcatactggcggtatgaatgtggtgggcggtgaatggacaggtagt
gagcctaagaccaaggtatcccctctgaagaattccaatcaatcccaact
ggcccttagtataaagaagattggttaggggccaagggg
gaattctctgatgccttctcagactgtttttctcagtaaaacatttgtca
cattcactacatttgtaaggtttctctcctgaatgaattctatgatgaac
tctcagagagcctttgtgagtaaagcatttgtcacattcactacatttgt
aaggtttctctcctgcatgaattctatgatgaactctcagatagcctttg
tcagtaaagcatttgtcgcattcactacatttgtaaggtttctctcctgc
atgaattctatgatgaactctaagactgcctttgtcagtaaagcatttgt
cacactcactgcattggtacggtttctctcctgtatgaattctctgatga
actctcagactgcttttgtcagtaaagcatttgtcgcattcactacattt
gtaaggtttctctcctgaatgaattctacgatgaatactaagatgggatg
gttgggtaaagcatttgtcacactcactgcatttgtacggtttctctcct
atatgaattctctgatgaactctgagactgcctttgtcagtaaagcattt
gtcgcattcactacatttgtaaggtttctctcctgaatgaattctacgat
gaatactaagaggggatggttgggtaaagcatttgtcgcattcactacat
ttgtaaggtttctctcctgaatgaattctacgatgaatactaagatggga
tggttgggtaaagcatttgtcacactcactgcatttgtaaggtttctctc
ctgtatgaattctctgatgaactctcagactgcctttgtcagtaaagcat
ttgtcacactcattacatttgtaaggtttctctcctgtatgaattctctg
atgctttctcagagtgaatttgtcagtaaagcatttgtcacattcattac
atttgtaaggtttctctcctgtatgatttctctgatgctttctcagagtg
cattggtcaggaagcatttgtcgcattcactacatttgtaaggtttcttt
cctgatgattctacgatgatactaagatggatgatgggtaagcatttgtc
accacctccactgcatttgtaagttctctctttaatgattctctggatga
actctcagaactgccttgtcagtaaggccatgttcacattcaattacatt
gtaaggattcctccctccctggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145941615_145942791
seq2: B6Ng01-308B17.b_48_1236

seq1  GAATTCTTAGACCTTCAGTATACAGACATACACATAGAGCCATTGTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGACCTTCAGTATACAGACATACACATAGAGCCATTGTTGGG  50

seq1  CTAGATGGACTATAGCCTGTCAGTCCTTCTAATAAATCATGTGTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGGACTATAGCCTGTCAGTCCTTCTAATAAATCATGTGTGTGTGT  100

seq1  GTGTGTCAGAGAGAGTCATTCTATAAATTGTTACTCTAGGAAATGCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCAGAGAGAGTCATTCTATAAATTGTTACTCTAGGAAATGCAGAA  150

seq1  TAATATAACAATATTCCTTCTTAAATGCTCCCCACACATACACACACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAACAATATTCCTTCTTAAATGCTCCCCACACATACACACACTTT  200

seq1  TTTTTTTCTTTTCTCCTGAAAAATCGCCTGGAGATGCTAGGAAGGAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTTCTCCTGAAAAATCGCCTGGAGATGCTAGGAAGGAAACT  250

seq1  TGTTTAGAATCAGTTTCATGTGCTACTTTTGGGATTGACTTTCTCAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGAATCAGTTTCATGTGCTACTTTTGGGATTGACTTTCTCAGCTT  300

seq1  TTACCCTGAGACTGTCTTCTACATGTTTGTACATATATAAGGATGCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTGAGACTGTCTTCTACATGTTTGTACATATATAAGGATGCTCCA  350

seq1  GAAACTGGGTGAGCCAATAAACTTCATCCTGTGAATGTTAACTTTAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGGGTGAGCCAATAAACTTCATCCTGTGAATGTTAACTTTAGCAG  400

seq1  CTGCGTCTCCAGAGACTGACTGACTAGAATTTTAGTACTGAGGGAAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTCTCCAGAGACTGACTGACTAGAATTTTAGTACTGAGGGAAGATT  450

seq1  GGAATGTTCCTGTCCCAAAGGGTAATTAGCTTATGTTGAGCTAGTTCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTTCCTGTCCCAAAGGGTAATTAGCTTATGTTGAGCTAGTTCTAG  500

seq1  CTTCCAAAACAAACACCCTTTGTCTACCTCTGTGTCTGAATTAATGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAAACAAACACCCTTTGTCTACCTCTGTGTCTGAATTAATGCCCT  550

seq1  GTGACTAAGAGATAAAAACATTTTAGAGTTTATTAATTCAGCAAACCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTAAGAGATAAAAACATTTTAGAGTTTATTAATTCAGCAAACCACT  600

seq1  AGCACCTATCAATCCCAAAGCTAAGGAGTGTCACCAAACAGCATCTAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTATCAATCCCAAAGCTAAGGAGTGTCACCAAACAGCATCTAAGG  650

seq1  CTAATAGACAATGTATTTTAAACATGTCCTGATTAACCTAATTCTGTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGACAATGTATTTTAAACATGTCCTGATTAACCTAATTCTGTGTT  700

seq1  CCTGAGCTGTGTTTTCTTAGTTAGGGTTTCCATTGCTGTAAAGAGACACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTGTGTTTTCTTAGTTAGGGTTTCCATTGCTGTAAAGAGACACT  750

seq1  ATGACTAAAGCCACTCTTATAAGGACAAACATTTGATTGGGGTTAGCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAAAGCCACTCTTATAAGGACAAACATTTGATTGGGGTTAGCTTA  800

seq1  CAGTTTCAGAGGTTCAGTCTATTATCATCACAGCAGGTAGCACGGCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCAGAGGTTCAGTCTATTATCATCACAGCAGGTAGCACGGCAGAA  850

seq1  TCCAGGCAGACAAGGTGCTGGAGAAGGAGCAGAGAGTTCTGCATCTTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCAGACAAGGTGCTGGAGAAGGAGCAGAGAGTTCTGCATCTTGAC  900

seq1  CTGACTGCATCCAGGAGAGACTGTCGCCCAGGCAGCTAGGAGGAGGGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGCATCCAGGAGAGACTGTCGCCCAGGCAGCTAGGAGGAGGGTCT  950

seq1  CATTGTCCACCCCCACAGTGACACACTTCCTCCAACAAAGCCATACCTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCCACCCCCACAGTGACACACTTCCTCCAACAAAGCCATACCTCC  1000

seq1  TAATAGTGCCA-CTCCCTAGGACAAGCATATTCAAACCACCACAGTTGTT  1049
      ||||||||||| ||| ||||||| ||||||||||||||||||||||||||
seq2  TAATAGTGCCACCTCTCTAGGAC-AGCATATTCAAACCACCACAGTTGTT  1049

seq1  ACGTTTCATACT-GCGGTATGATTGTGGT-GGCGGTGATGGGACAGTTAG  1097
      |||||||||||| ||||||||| |||||| ||||||||  |||||| |||
seq2  ACGTTTCATACTGGCGGTATGAATGTGGTGGGCGGTGAATGGACAGGTAG  1099

seq1  TGAGCCT-AGA-CAAGGTAT-CCCTCTGAGGAAT--CACACCAT-CCAAC  1141
      ||||||| ||| |||||||| |||||||| ||||  ||  | || |||||
seq2  TGAGCCTAAGACCAAGGTATCCCCTCTGAAGAATTCCAATCAATCCCAAC  1149

seq1  AGGCC--TAGTATAAAGAAGATTTGTTAGGGGC--AGGGG  1177
       ||||  |||||||||||||||| |||||||||  |||||
seq2  TGGCCCTTAGTATAAAGAAGATTGGTTAGGGGCCAAGGGG  1189