BAC Information

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BAC

Clone NameB6Ng01-308L23
Chromosome4 (Build37)
Map Location 35,299,591 - 35,439,071
singlet/doubletdoublet
Overlap geneLOC621227
Upstream geneLOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559
Downstream geneLingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308L23.bB6Ng01-308L23.g
ACCGA101169GA101170
length7791,144
definitionB6Ng01-308L23.b B6Ng01-308L23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,438,521 - 35,439,071)(35,299,591 - 35,300,747)
sequence
gaattccttagattcctaattactttccaaccggattctaattccattct
aacactgggctacatgtcttcttataaaatccatgaaacacccttaatct
tatattcatgattctctaggtgtggtggtttaaatagtaatggtcaccag
atgcccatgtatttgaatgcttgacccatagggaatggcatttttagaag
gtgtggcctttttggagtgggggtagccttggtggaggaagtatcattgt
cagggcaggctttgaggtctcattagactcaagctatgcccagtatggca
tatagtttccttctgctgcctgtggatcaagatgtaaaactctcagctcc
ttccccagcaccatgtctgcctgtatagtgccttgtttcttgccatgatg
gtaatggtctaagcctatgaaactgtatgccaggctgaattaaatgtttc
cctttataagagttactgtgatcatgatgtctcttcacagcaatagaaag
cctaagtaagacactaaggaacagaactggtagaataaataaacactaaa
aatgaaattggactggtgggatgtctcagtaggtagatgcacttgctatg
aaagtctggagagctgagttaaatccacagtaactatacataaagttgga
aagtgggcgccaactccacaaagttgtcctctgacctcctcatgcatagt
ttgacaagtgtggccaaatacacacacaaagaataataatgatgatagta
gtagtagtagtagtagtagtagtagtagt

gaattcatttccagatggttgtgaaacaaccacagaagggttataacgtt
tcaggcttttcctggttttcggacaattgtaaaattgttacagaaacaca
tgtcaacttccatgtgctcagtttattagtaagagaactgaagatcatag
agactgagggattactaagcctctccattttacttaatcgtattttaaaa
gtataatccctcataaaaaatggataggtccatttggaatgggtttagaa
aggaaacggaaagatcagaactctatttgacagattgagttaatctccaa
gtcttttaggtgaattaagactaagctaaattattttcaccatatcttaa
aatgactaactctctcacccaaaagaacatgtatttagaaaatgcactta
agctgacagcctcttggatccgattctgtggatgcctttggttgaacata
aggggcctgtacttaacacctgtgctgaaattcttgcaaacactggggat
ttgagaccaaatgtcagccccaagtttgatatttattggcttaggttact
ctttctcataaccttctaccaaccttaaaacactctgagattattatgtt
tgtctgagtgtcactaaaaatgtcattatattgtgacagagagcaggatt
tgagcaattgtggtggcttgttctggttctaggatattacatgtttcttt
gtcatgttgggattttctggaccactgaatctcctctttaaaatcttata
gcatttatttttgttgttttcatctttatccattcattatcttgtgtgga
tttaaagtcatttacaaaaagaataaaagttttcttagctgacagcacat
ttaacttttagtatggcaatacttttgtgttgtctttattttactgcata
tattagtatttacgtatagttaaatttctcttctcatatttcccaagaga
ccaagcttaatagtagaagcagacacgtgaaacaaataatatgtggctgt
gaggattttacatgggttgctcaagcaaacgcttcttagcataatacatc
gaggaaatgtatattcgtctcttatcaatagagttgaaattgctactata
gcaggccttggaggatgattcagttctaatgcatgtgaacagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_35438521_35439071
seq2: B6Ng01-308L23.b_277_827 (reverse)

seq1  ACTACTACTACTACTACTACTACTACTACTACTATCATCATTATTATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTACTACTACTACTACTACTACTACTACTATCATCATTATTATTCT  50

seq1  TTGTGTGTGTATTTGGCCACACTTGTCAAACTATGCATGAGGAGGTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGTATTTGGCCACACTTGTCAAACTATGCATGAGGAGGTCAGA  100

seq1  GGACAACTTTGTGGAGTTGGCGCCCACTTTCCAACTTTATGTATAGTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACTTTGTGGAGTTGGCGCCCACTTTCCAACTTTATGTATAGTTAC  150

seq1  TGTGGATTTAACTCAGCTCTCCAGACTTTCATAGCAAGTGCATCTACCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATTTAACTCAGCTCTCCAGACTTTCATAGCAAGTGCATCTACCTA  200

seq1  CTGAGACATCCCACCAGTCCAATTTCATTTTTAGTGTTTATTTATTCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACATCCCACCAGTCCAATTTCATTTTTAGTGTTTATTTATTCTAC  250

seq1  CAGTTCTGTTCCTTAGTGTCTTACTTAGGCTTTCTATTGCTGTGAAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGTTCCTTAGTGTCTTACTTAGGCTTTCTATTGCTGTGAAGAGA  300

seq1  CATCATGATCACAGTAACTCTTATAAAGGGAAACATTTAATTCAGCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGATCACAGTAACTCTTATAAAGGGAAACATTTAATTCAGCCTGG  350

seq1  CATACAGTTTCATAGGCTTAGACCATTACCATCATGGCAAGAAACAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGTTTCATAGGCTTAGACCATTACCATCATGGCAAGAAACAAGGC  400

seq1  ACTATACAGGCAGACATGGTGCTGGGGAAGGAGCTGAGAGTTTTACATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATACAGGCAGACATGGTGCTGGGGAAGGAGCTGAGAGTTTTACATCT  450

seq1  TGATCCACAGGCAGCAGAAGGAAACTATATGCCATACTGGGCATAGCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCACAGGCAGCAGAAGGAAACTATATGCCATACTGGGCATAGCTTG  500

seq1  AGTCTAATGAGACCTCAAAGCCTGCCCTGACAATGATACTTCCTCCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAATGAGACCTCAAAGCCTGCCCTGACAATGATACTTCCTCCACCA  550

seq1  A  551
      |
seq2  A  551


seq1: chr4_35299591_35300747
seq2: B6Ng01-308L23.g_67_1210

seq1  GAATTCATTTCCAGATGGTTGTGAAACAACCACAGAAGGGTTATAACGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCAGATGGTTGTGAAACAACCACAGAAGGGTTATAACGTT  50

seq1  TCAGGCTTTTCCTGGTTTTCGGACAATTGTAAAATTGTTACAGAAACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTTTTCCTGGTTTTCGGACAATTGTAAAATTGTTACAGAAACACA  100

seq1  TGTCAACTTCCATGTGCTCAGTTTATTAGTAAGAGAACTGAAGATCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACTTCCATGTGCTCAGTTTATTAGTAAGAGAACTGAAGATCATAG  150

seq1  AGACTGAGGGATTACTAAGCCTCTCCATTTTACTTAATCGTATTTTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAGGGATTACTAAGCCTCTCCATTTTACTTAATCGTATTTTAAAA  200

seq1  GTATAATCCCTCATAAAAAATGGATAGGTCCATTTGGAATGGGTTTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATCCCTCATAAAAAATGGATAGGTCCATTTGGAATGGGTTTAGAA  250

seq1  AGGAAACGGAAAGATCAGAACTCTATTTGACAGATTGAGTTAATCTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACGGAAAGATCAGAACTCTATTTGACAGATTGAGTTAATCTCCAA  300

seq1  GTCTTTTAGGTGAATTAAGACTAAGCTAAATTATTTTCACCATATCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTAGGTGAATTAAGACTAAGCTAAATTATTTTCACCATATCTTAA  350

seq1  AATGACTAACTCTCTCACCCAAAAGAACATGTATTTAGAAAATGCACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTAACTCTCTCACCCAAAAGAACATGTATTTAGAAAATGCACTTA  400

seq1  AGCTGACAGCCTCTTGGATCCGATTCTGTGGATGCCTTTGGTTGAACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACAGCCTCTTGGATCCGATTCTGTGGATGCCTTTGGTTGAACATA  450

seq1  AGGGGCCTGTACTTAACACCTGTGCTGAAATTCTTGCAAACACTGGGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCTGTACTTAACACCTGTGCTGAAATTCTTGCAAACACTGGGGAT  500

seq1  TTGAGACCAAATGTCAGCCCCAAGTTTGATATTTATTGGCTTAGGTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACCAAATGTCAGCCCCAAGTTTGATATTTATTGGCTTAGGTTACT  550

seq1  CTTTCTCATAACCTTCTACCAACCTTAAAACACTCTGAGATTATTATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCATAACCTTCTACCAACCTTAAAACACTCTGAGATTATTATGTT  600

seq1  TGTCTGAGTGTCACTAAAAATGTCATTATATTGTGACAGAGAGCAGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGTGTCACTAAAAATGTCATTATATTGTGACAGAGAGCAGGATT  650

seq1  TGAGCAATTGTGGTGGCTTGTTCTGGTTCTAGGATATTACATGTTTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAATTGTGGTGGCTTGTTCTGGTTCTAGGATATTACATGTTTCTTT  700

seq1  GTCATGTTGGGATTTTCTGGACCACTGAATCTCCTCTTTAAAATCTTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTTGGGATTTTCTGGACCACTGAATCTCCTCTTTAAAATCTTATA  750

seq1  GCATTTATTTTTGTTGTTTTCATCTTTATCCATTCATTATCTTGTGTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATTTTTGTTGTTTTCATCTTTATCCATTCATTATCTTGTGTGGA  800

seq1  TTTAAAGTCATTTACAAAAAGAATAAAAGTTTTCTTAGCTGACAGCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTCATTTACAAAAAGAATAAAAGTTTTCTTAGCTGACAGCACAT  850

seq1  TTAACTTTTAGTATGGCAATACTTTTGTGTTGTCTTTATTTTACTGCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTTAGTATGGCAATACTTTTGTGTTGTCTTTATTTTACTGCATA  900

seq1  TATTAGTATTTACGTATAGTTAAA-TTCTCTTCTCATATTTCCCAAGAGA  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TATTAGTATTTACGTATAGTTAAATTTCTCTTCTCATATTTCCCAAGAGA  950

seq1  CCAAGCTTTAATAGTAGAAGCAGAACAACGTGAAACAAATAATATTGTGG  999
      |||||| |||||||||||||||||   ||||||||||||||||| |||||
seq2  CCAAGC-TTAATAGTAGAAGCAGA--CACGTGAAACAAATAATA-TGTGG  996

seq1  CTGTTGAAGGATTTTACATGGGTTGCTCAAGGCAAAACGCTTCTTAGCAT  1049
      ||||   ||||||||||||||||||||||||   ||||||||||||||||
seq2  CTGT--GAGGATTTTACATGGGTTGCTCAAG--CAAACGCTTCTTAGCAT  1042

seq1  AATACATCGAAGAAATGTATA-TCGTCTCTTATTCCATAGAGTTGAAATT  1098
      |||||||||| |||||||||| |||||||||| || ||||||||||||||
seq2  AATACATCGAGGAAATGTATATTCGTCTCTTA-TCAATAGAGTTGAAATT  1091

seq1  GCTACTATAAGCAGG-CTTGGAAAGAATGATTTCAGGTGGTAAATGCATG  1147
      |||||||| |||||| |||||  || |||| ||||| |    ||||||||
seq2  GCTACTAT-AGCAGGCCTTGG--AGGATGA-TTCAGTT--CTAATGCATG  1135

seq1  TGGAACAGAA  1157
      | ||||||||
seq2  T-GAACAGAA  1144


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