BAC Information

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BAC

Clone NameB6Ng01-309B12
Chromosome4 (Build37)
Map Location 37,236,572 - 37,368,301
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042132, LOC545600, LOC621458
Downstream geneLOC277771, LOC100039448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309B12.bB6Ng01-309B12.g
ACCGA101420GA101421
length1,1071,049
definitionB6Ng01-309B12.b B6Ng01-309B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,367,257 - 37,368,301)(37,236,572 - 37,237,622)
sequence
gaattctgtgaagcccttgggagttcttcagactgtggcattgattgccc
agttgccttgtgtgccaaggaacacctgggatgccttcaagctgtggtgt
ttttatgggagcagagaagctggtgatcagttggccagttgccatgtgtg
taggggatcttctggaatatcttcaggctgtggattcagttgccctatgt
gcagtggatctcctgggatgcctcaggctgtggtgtcttcaaggaagcag
cagaattgtgtcataattacattatttgaagtctagatctttgaggcatg
gagatataactttaatctatgtcttttgaggtgggaaaactcacttttaa
tttggacagcacattctggtggctgcttatatatggacaagaatgaagga
ggctgttttctttgtctgctcgctcttaccctcaatgaaaagtccattcc
ctcactagcattagagattacttctttaatattatggtaattactgaaag
cagcagaaacaaatgtattcttcagttattatttacagttaaatacagaa
gttaatattttaagaattattgtatcaatgagaatcaaaggagaaaagta
tgctggctgttcttatgtcaacttgacacacaaattagaattatgtgaaa
gaaggaaacctaagttgataatcatcttataatagtttattttcattcat
gttttgaaagttctagtctagaaatatgcattcttattgttttcggtccc
agtgcaattgttcaccttatctcccaggatttgaaacaaagagaaagaac
aggacccagtatcttaggttttatgtctcctgcatgaaacctacattaga
atttatttatttattaaacattttatttataaatattgattactctcacc
ctttcattacttgttcctgtcactcccagccccaattccttctatgattc
cagcactgtctacttaattgtcttgattcttagattattatgttacactt
attgtatgtgtgtgtgtgtgccacataaatatataaaccaaaacctgccc
agtttatgttgtttgtgtaatattaatgtttaggcccaaccaccctttgt
ataacta

gaattcaactaggaaaatgcttccataagattcagctataaggcagtttc
ttaattagtgattgatggggagggcccaaccctttgtgagtagtgctgtc
cctggaccagtggaacagcattttataataaagcagtcttggaaaatcat
gggaagcaaaccagtgagcagcactcctctatggcctgtgcatcagctct
tgctttcaggttcctgacctgcttgagtctgtttggtgatgaagagcaat
gtggaactgtatattagataaaccctttccttcccaacttgatttttggt
tactgtgtttcattgcagcaatagaaatcttaactaaggcaactccatat
tttgtgtagcattagcttcactttttaatatccatacttactccactgca
ttcagatgttcaatttccatatttttttgttgagatttcctctgggcctt
aacagtggaacagattttaaaaaaatcatagactgcttaaaataatactc
aattcttcagtgtttatataatattctatagatatttgccaggtccattt
gactaattatatgatttatctctattatttttctccccccctcccccgag
aatgacctgtctattgataagagtgctttggtgatgccatccactatcag
tgtgtccagataaatttctgttttatatctagtagcatatcttttgtgaa
attgggtgtgcctgtcttgttgtgtatatgcttagattgtaatagtcact
tgatagatttttttttctttaaatactatgaagtgaccttaactttcctg
aatagagttagtgatgagtttatttttttcagatattagaacagacactt
ttgctagtttgatatttctggaatatcttttccatctttgaaccattttg
atttgtgtttgggcttgttgagatcttccttctaacatgactgttatttg
ttcaatctgtttcttttttaattctgttgcaatatttgtattgcctttgc
atgccatcaatctcttgttttatatctggggtatattccatgtcttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_37367257_37368301
seq2: B6Ng01-309B12.b_108_1153 (reverse)

seq1  TAGTTAATACAAAGG--TGTTGGCCCTAA--AACAATATATACACAAACA  46
      ||||| |||||||||   ||||| |||||  |  ||||| ||||||||||
seq2  TAGTT-ATACAAAGGGTGGTTGGGCCTAAACATTAATAT-TACACAAACA  48

seq1  ACAATAAACTGGGCAGGTTTT-GTTTATATATTTATGT-GCACACACACA  94
      || |||||||||||||||||| |||||||||||||||| |||||||||||
seq2  AC-ATAAACTGGGCAGGTTTTGGTTTATATATTTATGTGGCACACACACA  97

seq1  CACATACAAATAAGTGTAACATTAATAATCTAAGAATCAAGACAATTAAG  144
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  CACATAC-AATAAGTGTAACA-TAATAATCTAAGAATCAAGACAATTAAG  145

seq1  TAGACAGTGCTGGAATCATAGAAGGAATTGGGGCTGGGAGTGACAGGAAC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGTGCTGGAATCATAGAAGGAATTGGGGCTGGGAGTGACAGGAAC  195

seq1  AAGTAATGAAAGGGTGAGAGTAATCAATATTTATAAATAAAATGTTTAAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATGAAAGGGTGAGAGTAATCAATATTTATAAATAAAATGTTTAAT  245

seq1  AAATAAATAAATTCTAATGTAGGTTTCATGCAGGAGACATAAAACCTAAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATTCTAATGTAGGTTTCATGCAGGAGACATAAAACCTAAG  295

seq1  ATACTGGGTCCTGTTCTTTCTCTTTGTTTCAAATCCTGGGAGATAAGGTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGGTCCTGTTCTTTCTCTTTGTTTCAAATCCTGGGAGATAAGGTG  345

seq1  AACAATTGCACTGGGACCGAAAACAATAAGAATGCATATTTCTAGACTAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTGCACTGGGACCGAAAACAATAAGAATGCATATTTCTAGACTAG  395

seq1  AACTTTCAAAACATGAATGAAAATAAACTATTATAAGATGATTATCAACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCAAAACATGAATGAAAATAAACTATTATAAGATGATTATCAACT  445

seq1  TAGGTTTCCTTCTTTCACATAATTCTAATTTGTGTGTCAAGTTGACATAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTCCTTCTTTCACATAATTCTAATTTGTGTGTCAAGTTGACATAA  495

seq1  GAACAGCCAGCATACTTTTCTCCTTTGATTCTCATTGATACAATAATTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCCAGCATACTTTTCTCCTTTGATTCTCATTGATACAATAATTCT  545

seq1  TAAAATATTAACTTCTGTATTTAACTGTAAATAATAACTGAAGAATACAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTAACTTCTGTATTTAACTGTAAATAATAACTGAAGAATACAT  595

seq1  TTGTTTCTGCTGCTTTCAGTAATTACCATAATATTAAAGAAGTAATCTCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTGCTGCTTTCAGTAATTACCATAATATTAAAGAAGTAATCTCT  645

seq1  AATGCTAGTGAGGGAATGGACTTTTCATTGAGGGTAAGAGCGAGCAGACA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAGTGAGGGAATGGACTTTTCATTGAGGGTAAGAGCGAGCAGACA  695

seq1  AAGAAAACAGCCTCCTTCATTCTTGTCCATATATAAGCAGCCACCAGAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACAGCCTCCTTCATTCTTGTCCATATATAAGCAGCCACCAGAAT  745

seq1  GTGCTGTCCAAATTAAAAGTGAGTTTTCCCACCTCAAAAGACATAGATTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTCCAAATTAAAAGTGAGTTTTCCCACCTCAAAAGACATAGATTA  795

seq1  AAGTTATATCTCCATGCCTCAAAGATCTAGACTTCAAATAATGTAATTAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATATCTCCATGCCTCAAAGATCTAGACTTCAAATAATGTAATTAT  845

seq1  GACACAATTCTGCTGCTTCCTTGAAGACACCACAGCCTGAGGCATCCCAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAATTCTGCTGCTTCCTTGAAGACACCACAGCCTGAGGCATCCCAG  895

seq1  GAGATCCACTGCACATAGGGCAACTGAATCCACAGCCTGAAGATATTCCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCACTGCACATAGGGCAACTGAATCCACAGCCTGAAGATATTCCA  945

seq1  GAAGATCCCCTACACACATGGCAACTGGCCAACTGATCACCAGCTTCTCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCCCCTACACACATGGCAACTGGCCAACTGATCACCAGCTTCTCT  995

seq1  GCTCCCATAAAAACACCACAGCTTGAAGGCATCCCAGGTGTTCCTTGGCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCATAAAAACACCACAGCTTGAAGGCATCCCAGGTGTTCCTTGGCA  1045

seq1  C  1045
      |
seq2  C  1046


seq1: chr4_37236572_37237622
seq2: B6Ng01-309B12.g_64_1112

seq1  GAATTCAACTAGGAAAATGCTTCCATAAGATTCAGCTATAAGGCAGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTAGGAAAATGCTTCCATAAGATTCAGCTATAAGGCAGTTTC  50

seq1  TTAATTAGTGATTGATGGGGAGGGCCCAACCCTTTGTGAGTAGTGCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAGTGATTGATGGGGAGGGCCCAACCCTTTGTGAGTAGTGCTGTC  100

seq1  CCTGGACCAGTGGAACAGCATTTTATAATAAAGCAGTCTTGGAAAATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACCAGTGGAACAGCATTTTATAATAAAGCAGTCTTGGAAAATCAT  150

seq1  GGGAAGCAAACCAGTGAGCAGCACTCCTCTATGGCCTGTGCATCAGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCAAACCAGTGAGCAGCACTCCTCTATGGCCTGTGCATCAGCTCT  200

seq1  TGCTTTCAGGTTCCTGACCTGCTTGAGTCTGTTTGGTGATGAAGAGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCAGGTTCCTGACCTGCTTGAGTCTGTTTGGTGATGAAGAGCAAT  250

seq1  GTGGAACTGTATATTAGATAAACCCTTTCCTTCCCAACTTGATTTTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACTGTATATTAGATAAACCCTTTCCTTCCCAACTTGATTTTTGGT  300

seq1  TACTGTGTTTCATTGCAGCAATAGAAATCTTAACTAAGGCAACTCCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGTTTCATTGCAGCAATAGAAATCTTAACTAAGGCAACTCCATAT  350

seq1  TTTGTGTAGCATTAGCTTCACTTTTTAATATCCATACTTACTCCACTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTAGCATTAGCTTCACTTTTTAATATCCATACTTACTCCACTGCA  400

seq1  TTCAGATGTTCAATTTCCATATTTTTTTGTTGAGATTTCCTCTGGGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGTTCAATTTCCATATTTTTTTGTTGAGATTTCCTCTGGGCCTT  450

seq1  AACAGTGGAACAGATTTTAAAAAAATCATAGACTGCTTAAAATAATACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGGAACAGATTTTAAAAAAATCATAGACTGCTTAAAATAATACTC  500

seq1  AATTCTTCAGTGTTTATATAATATTCTATAGATATTTGCCAGGTCCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCAGTGTTTATATAATATTCTATAGATATTTGCCAGGTCCATTT  550

seq1  GACTAATTATATGATTTATCTCTATTATTTTTCTCCCCCCCTCCCCCGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATTATATGATTTATCTCTATTATTTTTCTCCCCCCCTCCCCCGAG  600

seq1  AATGACCTGTCTATTGATAAGAGTGCTTTGGTGATGCCATCCACTATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCTGTCTATTGATAAGAGTGCTTTGGTGATGCCATCCACTATCAG  650

seq1  TGTGTCCAGATAAATTTCTGTTTTATATCTAGTAGCATATCTTTTGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCAGATAAATTTCTGTTTTATATCTAGTAGCATATCTTTTGTGAA  700

seq1  ATTGGGTGTGCCTGTCTTGTTGTGTATATGCTTAGATTGTAATAGTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTGTGCCTGTCTTGTTGTGTATATGCTTAGATTGTAATAGTCACT  750

seq1  TGATAGA-TTTTTTTTCTTTAAATACTATGAAGTGACCTTAACTTTCCTG  799
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGATTTTTTTTTCTTTAAATACTATGAAGTGACCTTAACTTTCCTG  800

seq1  AATAGAGTTAGTGATGAGTTTATTTTTTTCAGATATTAGAACAGACACTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGTTAGTGATGAGTTTATTTTTTTCAGATATTAGAACAGACACTT  850

seq1  TTGCTAGTTTGATATTTCTGGAATATCTTTTCCATCTTTGAACCATTTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGTTTGATATTTCTGGAATATCTTTTCCATCTTTGAACCATTTTG  900

seq1  ATTTGTGTTT-GGCTTGTTGAGATCTTCCTTCTAACATGACTGTTATTTG  948
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTTTGGGCTTGTTGAGATCTTCCTTCTAACATGACTGTTATTTG  950

seq1  TTCAATCTGTTTCTTTTTTAATTCTGTTTGCATATTTGTATTGCCTTTTG  998
      ||||||||||||||||||||||||||||   |||||||||||||| ||||
seq2  TTCAATCTGTTTCTTTTTTAATTCTGTTGCAATATTTGTATTGCC-TTTG  999

seq1  CATGCCATCCATCTCTTTGTTTTTATTATCTTGGGGTATATT-CATGTCT  1047
      ||||||||| ||||| |||||||   |||| ||||||||||| |||||||
seq2  CATGCCATCAATCTC-TTGTTTT--ATATC-TGGGGTATATTCCATGTCT  1045

seq1  TCTT  1051
      ||||
seq2  TCTT  1049


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