BAC Information

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BAC

Clone NameB6Ng01-309C08
Chromosome4 (Build37)
Map Location 78,818,568 - 78,819,690
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039974, LOC100039996, LOC100040026
Downstream geneLOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309C08.bB6Ng01-309C08.g
ACCGA101460GA101461
length1,2001,116
definitionB6Ng01-309C08.b B6Ng01-309C08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacgcc
cgggctaccttgccagcagagtcttgcccaacacccgcaagggcccacac
gggactccccacgggatcctaagacatctggtgagtggaacacagcgcct
gccccaatccaatcgcaaggaacctgagactgcggtacatagggaagcag
gctacacgggcttgatctggagcacaaaccccttccactccactcgagcc
ccaggctacctgccagcagattcttgcccaacacccgcaagggcccacac
aggattccacatgagatcctaagacctctagtgagtggaacacaacttct
gccaggagtctggtttgaacaccagatatctgggtacctgccctgcaaca
agagagcttgcctgcagagaatactctgcccactgaaaccaaggagagtg
ctaccctccaggtctgcttatagaggctaacagagtcacctgaagaacaa
gctcttaacagtgacaactaaaacagctagcttcagagattaccagatgg
cgaaaggcaaacgtaagaatcctactaacagaaatcaagaccactcacca
tcatcagaacgcagcactcccaccccacctagtcctgggcaccccaacac
aaccgaaaatctagacacagatttaaaaacatttctcctgatgatgatag
aggacatcaagacggactttcataagtcacttaaagaattacaggagagc
actgctaaagagttacaggcccttaaagaaaagcaggaaaacacagccaa
acaggtagaaatcattaaagaaaaacaggaaaacacatccaaacaggtga
tggaaatgaacaaaaccatactagaactaaaggggaagtagacacaataa
agaaaacccaaagcgaggcacgctggagaatagaaacctaggaaagagat
ctggaatcatagatgcgagcatcagcaacagaatacaagaaatgggagga
gagaatctcagggtgccagaagatcatagagaaacatcgaacccacggtt
caaaaaaatcgaatgcaaggaatctacttcaaaacattcaggtatatgtc

gaattcttctcaacagctttattccaggaacacctcgatgctacaggacc
ccgggaaccctgggagggctgcttatatacaccccagcactggggagggc
tatgtgtcctcctgggattggtcagtctgcctgcactttaatttgtatgc
atccgctcaggaggggttggcgccagattcgggctagctcctgctcagtg
gcattatttacggagacagagatggtgtactggaggccggagccatcttt
taggcactggctgcctacagtattctatagtatgtgccctgtcatgatat
gtgactctgttaacctagttttctattgactttcttgtcatgaattctgc
ctatgtaggttccaatttagaaagaaatacactgaaaatggcagaaaatt
ctttattttctaagttacaatctaagattgtccatcagtattttatggag
actcaggtagttcatgtttgccatctcatctatactaagagtagcctcta
ttgcatgatgttgtagaagaatatactaaaatttaaaaacagtcttttga
atattaagacaagtgggcagtacaatgtgcccaaaacattaaatcataaa
tttcttattcattccactgatttaataatttcttttatctgaagggattt
cctaaaattcacattttataatgtatttactagagtcatataacatttgt
agatgaagcttgtaagaattgatatacccatcaggattttatctgcatgt
tccaatacagtgattctcaaacttttaatactgtgctgattctcatccat
aaaattatttttgttgcaacatcatgacacaattcagttactattatgaa
tcttaacgtaaaatctgtattttttgaaagtttcaggtgacctctatgaa
aaggccattcagtctctgaaaggattgctataattcacaggttgagaaac
acggttctaataaaaacatgatgaactgaattatcctatgatagctttgt
gttcaagctcttatctgtaaggtctggacttgtttagtgactatttgcag
cttaactttgactttcagcatagattttttcattctattttaccctcctg
aattggataagatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_78818568_78819690
seq2: B6Ng01-309C08.g_63_1178

seq1  GAATTCTTCTCAACAGCTTTATTCCAGGAACACCTCGATGCTACAGGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCAACAGCTTTATTCCAGGAACACCTCGATGCTACAGGACC  50

seq1  CCGGGAACCCTGGGAGGGCTGCTTATATACACCCCAGCACTGGGGAGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAACCCTGGGAGGGCTGCTTATATACACCCCAGCACTGGGGAGGGC  100

seq1  TATGTGTCCTCCTGGGATTGGTCAGTCTGCCTGCACTTTAATTTGTATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTCCTCCTGGGATTGGTCAGTCTGCCTGCACTTTAATTTGTATGC  150

seq1  ATCCGCTCAGGAGGGGTTGGCGCCAGATTCGGGCTAGCTCCTGCTCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGCTCAGGAGGGGTTGGCGCCAGATTCGGGCTAGCTCCTGCTCAGTG  200

seq1  GCATTATTTACGGAGACAGAGATGGTGTACTGGAGGCCGGAGCCATCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATTTACGGAGACAGAGATGGTGTACTGGAGGCCGGAGCCATCTTT  250

seq1  TAGGCACTGGCTGCCTACAGTATTCTATAGTATGTGCCCTGTCATGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACTGGCTGCCTACAGTATTCTATAGTATGTGCCCTGTCATGATAT  300

seq1  GTGACTCTGTTAACCTAGTTTTCTATTGACTTTCTTGTCATGAATTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCTGTTAACCTAGTTTTCTATTGACTTTCTTGTCATGAATTCTGC  350

seq1  CTATGTAGGTTCCAATTTAGAAAGAAATACACTGAAAATGGCAGAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAGGTTCCAATTTAGAAAGAAATACACTGAAAATGGCAGAAAATT  400

seq1  CTTTATTTTCTAAGTTACAATCTAAGATTGTCCATCAGTATTTTATGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTCTAAGTTACAATCTAAGATTGTCCATCAGTATTTTATGGAG  450

seq1  ACTCAGGTAGTTCATGTTTGCCATCTCATCTATACTAAGAGTAGCCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGTAGTTCATGTTTGCCATCTCATCTATACTAAGAGTAGCCTCTA  500

seq1  TTGCATGATGTTGTAGAAGAATATACTAAAATTTAAAAACAGTCTTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGATGTTGTAGAAGAATATACTAAAATTTAAAAACAGTCTTTTGA  550

seq1  ATATTAAGACAAGTGGGCAGTACAATGTGCCCAAAACATTAAATCATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGACAAGTGGGCAGTACAATGTGCCCAAAACATTAAATCATAAA  600

seq1  TTTCTTATTCATTCCACTGATTTAATAATTTCTTTTATCTGAAGGGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATTCATTCCACTGATTTAATAATTTCTTTTATCTGAAGGGATTT  650

seq1  CCTAAAATTCACATTTTATAATGTATTTACTAGAGTCATATAACATTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATTCACATTTTATAATGTATTTACTAGAGTCATATAACATTTGT  700

seq1  AGATGAAGCTTGTAAGAATTGATATACCCATCAGGATTTTATCTGCATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGCTTGTAAGAATTGATATACCCATCAGGATTTTATCTGCATGT  750

seq1  TCCAATACAGTGATTCTCAAACTTTTAATACTGTGCTGATTCTCATCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATACAGTGATTCTCAAACTTTTAATACTGTGCTGATTCTCATCCAT  800

seq1  AAAATTATTTTTGTTGCAACATCATGACACAATTCAGTTACTATTATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTTTTGTTGCAACATCATGACACAATTCAGTTACTATTATGAA  850

seq1  TCTTAACGTAAAATCTGTATTTTTTGAAAGTTTCAGGTGACCTCTATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACGTAAAATCTGTATTTTTTGAAAGTTTCAGGTGACCTCTATGAA  900

seq1  AAGGCCATTCAGTCTCTGAAGGGATTGCTATAATTCACAGGTTGAGAAAC  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAGGCCATTCAGTCTCTGAAAGGATTGCTATAATTCACAGGTTGAGAAAC  950

seq1  ACGGTTCTAAT-AAAACATGATGAACTGAATTATCCTATGATAGCTTTGT  999
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTCTAATAAAAACATGATGAACTGAATTATCCTATGATAGCTTTGT  1000

seq1  GTTTCAAAGCTC-TATCTGTAAAGTCTGGGACTTGTTTAGTGAACTATTT  1048
      |||   |||||| ||||||||| |||| |||||||||||||| |||||||
seq2  GTT--CAAGCTCTTATCTGTAAGGTCT-GGACTTGTTTAGTG-ACTATTT  1046

seq1  GCAGCTTTACTTTGGACTTTCAAGCCATAAGAATTTTTCATTTCTATTTT  1098
      ||||||| ||||| ||||||||   ||| ||| ||||||| |||||||||
seq2  GCAGCTTAACTTT-GACTTTCA--GCAT-AGATTTTTTCA-TTCTATTTT  1091

seq1  TTCCCTCTGAATTTGATAAGATCTT  1123
        ||  ||||||| |||||||||||
seq2  ACCCTCCTGAATTGGATAAGATCTT  1116