BAC Information

Click to search

BAC

Clone NameB6Ng01-309G18
Chromosome4 (Build37)
Map Location 93,377,526 - 93,378,681
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309G18.bB6Ng01-309G18.g
ACCGA101667GA101668
length1,0071,133
definitionB6Ng01-309G18.b B6Ng01-309G18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaaaggctgagaagcacctgagaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatgaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
gaattgctagcttatacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccaacaatacatctcctgggc
atatacccagaagatgtcccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gagtactacacagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcaaatgaaatgtactcactgataagtggatattagcccagaaac
ttagtaaagcgagatataaggtacaatatgcgaaacacatgaaactgaag
aagaacgaagaccaaatgtgaacactttgttccttcttagaattggaaac
aatcacccatggaaggagttaaagagacaaagtttggagctgagacaaaa
ggatggaccatctagagactgccatatccagggatccatcccataattag
cctccaagcgatgacaccattgcatacattagcaagcctctgttgcaatt
ccatgtattcttatctgacctttagagttctaaacgggaagaagtattct
gcatccagggatttcatcccttctctcctgaaagagtaatgggaatagtt
tgctaactgtggggtcatttgaaggttaagggtgtctgagccatcgtatg
tgaactg

gaattcaagatctcttttactggacagttaatacaaaaaaaaggtgacaa
aaatgattttaaaagtccagggagttgagttgagtgattgatagataaca
aaagatactgatatttgtaagctgaagtgaatacaaagagatggagcagg
aatgtggtggttatctttgaagactgacataatgtggaccaggaaatctg
gtagtatgtatggtagaaatgaacctatatatttgtgagtatctgaatca
ttagaaacactgtgaagagatgtgagaagggcttacaattttgtaccaat
ccaaacacctctcaaatccatgacttctggtatggtttcttaaatattgt
tttgtgaatttttctggtaagacatgaacaagtatctcttcaccccagtt
agggcaccatagagaggtcaaagactcagaccatctaaatatagctttgc
taaaccaatgagtttatttgggttacttacaggaatgtggatgaatgatt
gagtactgggaaactaagggcaacttcttatagaaacatccccacagtat
ggatgctagcttgtgaaatctgcatccctcaagctttctttgcaatacac
acttaatttcaccaaagagtttattacttcccaacaagtcttttctactt
aggcagccctggtcatacgttttgggtcttgtgacttcttgagctttcca
agccttgtaagcttgattaggatcctaagttgtgaacctctgtaagttct
ccagtaacaaaagtttcaactgcagaacatagcctcagaactgatgttgc
ttcctccagctctactactccatctgccccttttctacagcatctcttta
agctttcgggatgggggcagatcatatagtggctatattgttttcttcca
tttatggctgagcattagacaactctacttcagccacattcacttattct
cagctgttctagtgatatgagcctctaagtaccaccaaataaacaagaag
tttccttcccactgagctgacagtagcataactgtaggtaaacttcgaac
attagaaggaactttcacagacagcatatcatttgaactaacattgtaat
gcccttccagagctagctgaaaactaatgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_93377526_93378681
seq2: B6Ng01-309G18.g_67_1199

seq1  GAATTCAAGATCTCTTTTACTGGACAGTTAATACAAAAAAAAGGTGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATCTCTTTTACTGGACAGTTAATACAAAAAAAAGGTGACAA  50

seq1  AAATGATTTTAAAAGTCCAGGGAGTTGAGTTGAGTGATTGATAGATAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTTTAAAAGTCCAGGGAGTTGAGTTGAGTGATTGATAGATAACA  100

seq1  AAAGATACTGATATTTGTAAGCTGAAGTGAATACAAAGAGATGGAGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATACTGATATTTGTAAGCTGAAGTGAATACAAAGAGATGGAGCAGG  150

seq1  AATGTGGTGGTTATCTTTGAAGACTGACATAATGTGGACCAGGAAATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGTGGTTATCTTTGAAGACTGACATAATGTGGACCAGGAAATCTG  200

seq1  GTAGTATGTATGGTAGAAATGAACCTATATATTTGTGAGTATCTGAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATGTATGGTAGAAATGAACCTATATATTTGTGAGTATCTGAATCA  250

seq1  TTAGAAACACTGTGAAGAGATGTGAGAAGGGCTTACAATTTTGTACCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACACTGTGAAGAGATGTGAGAAGGGCTTACAATTTTGTACCAAT  300

seq1  CCAAACACCTCTCAAATCCATGACTTCTGGTATGGTTTCTTAAATATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACACCTCTCAAATCCATGACTTCTGGTATGGTTTCTTAAATATTGT  350

seq1  TTTGTGAATTTTTCTGGTAAGACATGAACAAGTATCTCTTCACCCCAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAATTTTTCTGGTAAGACATGAACAAGTATCTCTTCACCCCAGTT  400

seq1  AGGGCACCATAGAGAGGTCAAAGACTCAGACCATCTAAATATAGCTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACCATAGAGAGGTCAAAGACTCAGACCATCTAAATATAGCTTTGC  450

seq1  TAAACCAATGAGTTTATTTGGGTTACTTACAGGAATGTGGATGAATGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAATGAGTTTATTTGGGTTACTTACAGGAATGTGGATGAATGATT  500

seq1  GAGTACTGGGAAACTAAGGGCAACTTCTTATAGAAACATCCCCACAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTGGGAAACTAAGGGCAACTTCTTATAGAAACATCCCCACAGTAT  550

seq1  GGATGCTAGCTTGTGAAATCTGCATCCCTCAAGCTTTCTTTGCAATACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTAGCTTGTGAAATCTGCATCCCTCAAGCTTTCTTTGCAATACAC  600

seq1  ACTTAATTTCACCAAAGAGTTTATTACTTCCCAACAAGTCTTTTCTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTTCACCAAAGAGTTTATTACTTCCCAACAAGTCTTTTCTACTT  650

seq1  AGGCAGCCCTGGTCATACGTTTTGGGTCTTGTGACTTCTTGAGCTTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCCTGGTCATACGTTTTGGGTCTTGTGACTTCTTGAGCTTTCCA  700

seq1  AGCCTTGTAAGCTTGATTAGGATCCTAAGTTGTGAACCTCTGTAAGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGTAAGCTTGATTAGGATCCTAAGTTGTGAACCTCTGTAAGTTCT  750

seq1  CCAGTAACAAAAGTTTCAACTGCAGAACATAGCCTCAGAACTGATGTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAACAAAAGTTTCAACTGCAGAACATAGCCTCAGAACTGATGTTGC  800

seq1  TTCCTCCAGCTCTACTACTCCATCTGCCCCTTTTCTACAGCATCTCTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCAGCTCTACTACTCCATCTGCCCCTTTTCTACAGCATCTCTTTA  850

seq1  AGCTTTCGGGATGGGGGCAGATCATATAGTGGCTATATTGTTTTCTTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCGGGATGGGGGCAGATCATATAGTGGCTATATTGTTTTCTTCCA  900

seq1  TTTATGGCTGAGCATTAGACAACTCTACTTCAGCCACATTCACTTATTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGCTGAGCATTAGACAACTCTACTTCAGCCACATTCACTTATTCT  950

seq1  CAGCTGTTCTAGTGATTATGAGCCTCTAAAGTAACCACCAAATAAACAAA  1000
      ||||||||||||||| ||||||||||| |||| |||||||||||||| ||
seq2  CAGCTGTTCTAGTGA-TATGAGCCTCT-AAGT-ACCACCAAATAAAC-AA  996

seq1  GAAGTTTCCCTTCCCAACTGAGGCTGACAGTAGCAATAAACTGTAAGTAA  1050
      ||||||| ||||||| ||||| |||||||||||||   ||||||| || |
seq2  GAAGTTT-CCTTCCC-ACTGA-GCTGACAGTAGCA--TAACTGTAGGT-A  1040

seq1  AACCTCGAACATTTAGAAAGAAATTTCACAGGACAGCATATCATTTTGAC  1100
      ||| ||||||| |||||| ||| ||||||| |||||||||||| ||||| 
seq2  AACTTCGAACA-TTAGAAGGAACTTTCACA-GACAGCATATCA-TTTGAA  1087

seq1  CAAACAATTGTAGTGCCTTCCCAAGGAGGGCCCTAAAGCTGAGAAACTAA  1150
      | ||| |||||| |||| | |||  |||    ||  |||||| |||||||
seq2  CTAAC-ATTGTAATGCCCTTCCA--GAG----CT--AGCTGA-AAACTAA  1127

seq1  TGAAAA  1156
      ||||||
seq2  TGAAAA  1133


| Home | SequenceCutter | Blast | Download |