BAC Information

Click to search

BAC

Clone NameB6Ng01-309I21
Chromosome4 (Build37)
Map Location 17,903,848 - 18,047,063
singlet/doubletdoublet
Overlap geneMmp16
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309I21.bB6Ng01-309I21.g
ACCGA101767GA101768
length8941,156
definitionB6Ng01-309I21.b B6Ng01-309I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,903,848 - 17,904,741)(18,045,700 - 18,047,063)
sequence
gaattccttgaagctatttctcttatctattgtgatgaaacagtttacat
caaataaatacactgatatctagcacatcatgtgcataggcttgttatat
gagcagtgctcactgagatcatcctgtctctgcttgaatttctaaaaggt
tgggacatagacttcccaaaggcatacacaatacactagtatggaagtca
tatcaggagaatgctcaagattattcccttcctctatgtcaaaatttttc
tttaaagtttagttctaagtctcaacaatatatacgagaggtcattgccc
tcagtattctttattgaccgttgaacagctgaccacaagcatttctctgg
tgccatcagaatagcataccttcgtgaatgacagataagtcctttagaga
acagacatattgaacctctgaagagatagccttcccatctttctcagtat
ttactgtttagcatatgtagctggctaagcatccagataacatttgccat
gcattttgtttagttttgttttgttttcatcgttgctttttatttttatt
ttgtttgttccgcaaaatggtcctcttaccacttatgagatttagacaag
aaaaactaagacactaatttctgaataaaaaagatcttagaagatataat
agaaagttcaatgacaaagatgaggttttcaaaagacatactgttttcct
tgggtagatttatttcagtcagacacaatatactcctataacatctactt
gcactgtgggcctggtcatgtggattaccctttcctatcttatttgttca
ataataaagagaatataatatcaaactctcagatttgtggtggtaattgt
tatatatatatatatatatatatatatatatatatatatatata

gaattcaaactgataacctatcttagtatttcacttagtctgattaataa
tatacagacaaacagtatttacctgaaattgtaaacttgaaaattatttt
atgtaaaatctattacctggtttacagttgccttcatatttgttaaagta
atgaaaatagtgaaagagatgaattactttatgaatacaaatatgttttc
atttcacttttggaaacagtaggggtgacctttatatgttactcatttag
aggttacagaaaaaacttgattggttgactttcactgatattaagctgac
attatggtcttaatccaaatagcttcatttaaaaaaagtttaattgctat
tttcatcaccgatcattttcgtgatttctctagcattacctcattttaaa
atacaaattccaaccatatgaaaagtcagcaatcatatgaatgaagtgtc
tggcatatggtgaacaaaggaagcccaatgcttttgatcacattctcctt
atttcttatcacttacgatcttatagtggtcccaatcaagatagtagaca
tagaagccactttcagtacatagacttcccacattcaaggcaacaaaacc
caaatcatatccatgatatttaccagaattgaagcataataaagactcat
ccattttcaatgctatgattattttctagcccttaggtacttacagtctt
gagatgaatcagggtagtgtgatgaatgaataaagaggcaataaattgct
tattgattttctttttgatttttgagagaaaaaaaaagttcagtgcatgt
tgatagagttcctcgatgatttgcacatgtcccaaaaaggttacagttac
tcacttctattattagaaaaagaaaatgcttccagtcattttttattttt
tcttgacatcaaggtcctgaaaggattaaaccctctaacaagcaaacact
gtataaacaggcttatgtatacagtcctcatgctctgtcataactaacta
taatatctcatcacctaagaaaggagtactgaagtagagctacagcgtcg
atccctgcccttcctggtgttatttaccctccacatcaatcatgaaatgt
ctgtggaagtacagtctgcatgcatatatgtggtacatgagcatgatcca
tttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_17903848_17904741
seq2: B6Ng01-309I21.b_47_940

seq1  GAATTCCTTGAAGCTATTTCTCTTATCTATTGTGATGAAACAGTTTACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGAAGCTATTTCTCTTATCTATTGTGATGAAACAGTTTACAT  50

seq1  CAAATAAATACACTGATATCTAGCACATCATGTGCATAGGCTTGTTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAATACACTGATATCTAGCACATCATGTGCATAGGCTTGTTATAT  100

seq1  GAGCAGTGCTCACTGAGATCATCCTGTCTCTGCTTGAATTTCTAAAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTGCTCACTGAGATCATCCTGTCTCTGCTTGAATTTCTAAAAGGT  150

seq1  TGGGACATAGACTTCCCAAAGGCATACACAATACACTAGTATGGAAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACATAGACTTCCCAAAGGCATACACAATACACTAGTATGGAAGTCA  200

seq1  TATCAGGAGAATGCTCAAGATTATTCCCTTCCTCTATGTCAAAATTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGAGAATGCTCAAGATTATTCCCTTCCTCTATGTCAAAATTTTTC  250

seq1  TTTAAAGTTTAGTTCTAAGTCTCAACAATATATACGAGAGGTCATTGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTTTAGTTCTAAGTCTCAACAATATATACGAGAGGTCATTGCCC  300

seq1  TCAGTATTCTTTATTGACCGTTGAACAGCTGACCACAAGCATTTCTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTCTTTATTGACCGTTGAACAGCTGACCACAAGCATTTCTCTGG  350

seq1  TGCCATCAGAATAGCATACCTTCGTGAATGACAGATAAGTCCTTTAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCAGAATAGCATACCTTCGTGAATGACAGATAAGTCCTTTAGAGA  400

seq1  ACAGACATATTGAACCTCTGAAGAGATAGCCTTCCCATCTTTCTCAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATATTGAACCTCTGAAGAGATAGCCTTCCCATCTTTCTCAGTAT  450

seq1  TTACTGTTTAGCATATGTAGCTGGCTAAGCATCCAGATAACATTTGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTTTAGCATATGTAGCTGGCTAAGCATCCAGATAACATTTGCCAT  500

seq1  GCATTTTGTTTAGTTTTGTTTTGTTTTCATCGTTGCTTTTTATTTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTGTTTAGTTTTGTTTTGTTTTCATCGTTGCTTTTTATTTTTATT  550

seq1  TTGTTTGTTCCGCAAAATGGTCCTCTTACCACTTATGAGATTTAGACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTCCGCAAAATGGTCCTCTTACCACTTATGAGATTTAGACAAG  600

seq1  AAAAACTAAGACACTAATTTCTGAATAAAAAAGATCTTAGAAGATATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAAGACACTAATTTCTGAATAAAAAAGATCTTAGAAGATATAAT  650

seq1  AGAAAGTTCAATGACAAAGATGAGGTTTTCAAAAGACATACTGTTTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTCAATGACAAAGATGAGGTTTTCAAAAGACATACTGTTTTCCT  700

seq1  TGGGTAGATTTATTTCAGTCAGACACAATATACTCCTATAACATCTACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGATTTATTTCAGTCAGACACAATATACTCCTATAACATCTACTT  750

seq1  GCACTGTGGGCCTGGTCATGTGGATTACCCTTTCCTATCTTATTTGTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTGGGCCTGGTCATGTGGATTACCCTTTCCTATCTTATTTGTTCA  800

seq1  ATAATAAAGAGAATATAATATCAAACTCTCAGATTTGTGGTGGTAATTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAGAGAATATAATATCAAACTCTCAGATTTGTGGTGGTAATTGT  850

seq1  TATATATATATATATATATATATATATATATATATATATATATA  894
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATATA  894


seq1: chr4_18045700_18047063
seq2: B6Ng01-309I21.g_69_1224 (reverse)

seq1  TGGAAATGGATAGTTTGGCTGCCTTGAATTTATATTTATACTCAACATAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CATGAAAGTTAGAATGCCTTTGGTTCAACTACATGTTTATGATTTGGTTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGGACATTTTTAATCATGGGTGGCATGCTGAAAAGCCTGGCAGAATGGTG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTTCCTACAATCCGAGCATATTTTGTAAAACTAAGAAAAAGAAACAGGAA  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGAAATGGATTCATGGCTTCATAGTACCACAT-TATGCAATGCAGACT  249
         |||||||| |||||   |||| ||||||||| ||||| |||||||||
seq2  -TGGAAATGGA-TCATG--CTCAT-GTACCACATATATGC-ATGCAGACT  44

seq1  GTACTTCAACAAGACA-TTCATGATTTTGAATGT-GAGGGTAAATAACA-  296
      ||||||| || ||||| |||||||||    |||| |||||||||||||| 
seq2  GTACTTCCAC-AGACATTTCATGATT---GATGTGGAGGGTAAATAACAC  90

seq1  CAGGGAGGGCAAGGATCGGCGCTGTAGCTCTACTTCAGTACTTCCTTTC-  345
      |||| |||||| |||||| |||||||||||||||||||||| ||||||| 
seq2  CAGGAAGGGCAGGGATCGACGCTGTAGCTCTACTTCAGTAC-TCCTTTCT  139

seq1  TAGGTGATGAGAATATTATAGTTAGTTATGACAGAGCATGGAGGACTGTA  395
      ||||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  TAGGTGATGAG-ATATTATAGTTAGTTATGACAGAGCAT-GAGGACTGTA  187

seq1  TACATAAGCCTGTTTATACAGTGTTTGCTTGTTAGAGGGTTTAATCCTTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAGCCTGTTTATACAGTGTTTGCTTGTTAGAGGGTTTAATCCTTT  237

seq1  CAGGACCTTGATGTCAAGAAAAAATAAAAAATGACTGGAAGCATTTTCTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCTTGATGTCAAGAAAAAATAAAAAATGACTGGAAGCATTTTCTT  287

seq1  TTTCTAATAATAGAAGTGAGTAACTGTAACCTTTTTGGGACATGTGCAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATAATAGAAGTGAGTAACTGTAACCTTTTTGGGACATGTGCAAA  337

seq1  TCATCGAGGAACTCTATCAACATGCACTGAACTTTTTTTTTCTCTCAAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGAGGAACTCTATCAACATGCACTGAACTTTTTTTTTCTCTCAAAA  387

seq1  ATCAAAAAGAAAATCAATAAGCAATTTATTGCCTCTTTATTCATTCATCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAAGAAAATCAATAAGCAATTTATTGCCTCTTTATTCATTCATCA  437

seq1  CACTACCCTGATTCATCTCAAGACTGTAAGTACCTAAGGGCTAGAAAATA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACCCTGATTCATCTCAAGACTGTAAGTACCTAAGGGCTAGAAAATA  487

seq1  ATCATAGCATTGAAAATGGATGAGTCTTTATTATGCTTCAATTCTGGTAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGCATTGAAAATGGATGAGTCTTTATTATGCTTCAATTCTGGTAA  537

seq1  ATATCATGGATATGATTTGGGTTTTGTTGCCTTGAATGTGGGAAGTCTAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATGGATATGATTTGGGTTTTGTTGCCTTGAATGTGGGAAGTCTAT  587

seq1  GTACTGAAAGTGGCTTCTATGTCTACTATCTTGATTGGGACCACTATAAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGAAAGTGGCTTCTATGTCTACTATCTTGATTGGGACCACTATAAG  637

seq1  ATCGTAAGTGATAAGAAATAAGGAGAATGTGATCAAAAGCATTGGGCTTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTAAGTGATAAGAAATAAGGAGAATGTGATCAAAAGCATTGGGCTTC  687

seq1  CTTTGTTCACCATATGCCAGACACTTCATTCATATGATTGCTGACTTTTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCACCATATGCCAGACACTTCATTCATATGATTGCTGACTTTTC  737

seq1  ATATGGTTGGAATTTGTATTTTAAAATGAGGTAATGCTAGAGAAATCACG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTGGAATTTGTATTTTAAAATGAGGTAATGCTAGAGAAATCACG  787

seq1  AAAATGATCGGTGATGAAAATAGCAATTAAACTTTTTTTAAATGAAGCTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATCGGTGATGAAAATAGCAATTAAACTTTTTTTAAATGAAGCTA  837

seq1  TTTGGATTAAGACCATAATGTCAGCTTAATATCAGTGAAAGTCAACCAAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATTAAGACCATAATGTCAGCTTAATATCAGTGAAAGTCAACCAAT  887

seq1  CAAGTTTTTTCTGTAACCTCTAAATGAGTAACATATAAAGGTCACCCCTA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTTTTCTGTAACCTCTAAATGAGTAACATATAAAGGTCACCCCTA  937

seq1  CTGTTTCCAAAAGTGAAATGAAAACATATTTGTATTCATAAAGTAATTCA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCAAAAGTGAAATGAAAACATATTTGTATTCATAAAGTAATTCA  987

seq1  TCTCTTTCACTATTTTCATTACTTTAACAAATATGAAGGCAACTGTAAAC  1245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCACTATTTTCATTACTTTAACAAATATGAAGGCAACTGTAAAC  1037

seq1  CAGGTAATAGATTTTACATAAAATAATTTTCAAGTTTACAATTTCAGGTA  1295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAATAGATTTTACATAAAATAATTTTCAAGTTTACAATTTCAGGTA  1087

seq1  AATACTGTTTGTCTGTATATTATTAATCAGACTAAGTGAAATACTAAGAT  1345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGTTTGTCTGTATATTATTAATCAGACTAAGTGAAATACTAAGAT  1137

seq1  AGGTTATCAGTTTGAATTC  1364
      |||||||||||||||||||
seq2  AGGTTATCAGTTTGAATTC  1156


| Home | SequenceCutter | Blast | Download |