BAC Information

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BAC

Clone NameB6Ng01-309O13
Chromosome4 (Build37)
Map Location 66,795,708 - 66,796,373
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309O13.bB6Ng01-309O13.g
ACCGA102032GA102033
length771968
definitionB6Ng01-309O13.b B6Ng01-309O13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaccacttatcaatgtttgaggagcaatgtgtgagttaagcttg
agtaatgtttcttttacaaatgtgggtgcccttgcatttgggaaataaat
tttaacaactgaaatgccttcttggtgtattttttctttgatgagtataa
aatgcccttctctatctattatgaataataattacacttatttgcttctt
gggttcatttgcttggaacttttcaactgtatactatgaggtaatatata
tttttgatgttgagatgtttttcttgtatgtagcagaacgatatatactg
ctttcaaatccagtctgttaagctgtgtctttatattgaatccatcaata
ttagaagatataaatgacaaatgactgtgaattcccattattttgtttat
gttagtgatggcattgtgtgtgtgtgtgtgtttgtgtgtgtgtcccttat
ttgggttttgttggtctttgattatttgtgactagtgttttcttgggtgt
agttaaccctgttgggttggagttttactttgagtaccttctgtagggat
gtatttgtgtatagataatgtttaaattttaatttttgtcttactggcat
ggcctgcaactgggctgaagaagtctgttaagaatttggggaaaaattgc
atggcagcagggcaggcagtgtggttaaacagggatgggtgtgggggtag
cagcaggacaatgttttttttgggattcaaaatctagagcactgggccat
taactaaccacagtgtaggta

gaattcttagccaggcagtggtggcacatgcctttaatcccagcactcag
gtggcagaggcaggcagattactgagttcaaggccagcctggtctacaga
gtgagttccaggacagcgagggctacacagagaaaccctgtctcgaaaaa
aacaaaacaaaagaaaacaaaacagaattctcaactgaggaataccaaat
tgctgagaaacatctaaagaaatgttcaacatcattagtcatcagggaaa
ttcaaacaaccctgagattctaccccacaccagtcacaataggtaagatc
aaaactcaggtgacaacagatgctggcaaggatgtggagaaagaggaaca
ctcctccattgttggtaggattgcaagctagtacaaccactctggaaata
agtctggcagttacttagaaaatttgacatattactatgtgaggattcag
ctataccactcctgggcatatactccccccaaaaatgatccaacatataa
caaggacacattctccactaagctggaaagaacccagatatccctcaaca
gaggaatggataaaaaaatgtggtatatttatacaatggagtactactca
gttattaaaaacaatgacttcatgaaattagaggtaaatggatggaacta
gaaaatatcatgctgtgtgatgtaaaacaattacaaaagaacacacatga
tataaactcactgatatgtgaatattagcccagaagctcggtatacacaa
gatacaggttatagaccacatgaatctcatgaagaaggaagaccaaagtg
ttgatacttcgatccttagaagggggaacaaaaatacccatgggagaaga
tacagaaacaaagtgtggcacagagattgaatgtccaaaagactgccaca
cctgggaatctatcccatatagagttaccaaatccagacattattgtgga
taccaacaaatgcttgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66795708_66796373
seq2: B6Ng01-309O13.b_138_816

seq1  AAATAAATTTTAACAACTGAAATGCCTTCTTGGTGTATTTTTTCTTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTTTAACAACTGAAATGCCTTCTTGGTGTATTTTTTCTTTGAT  50

seq1  GAGTATAAAATGCCCTTCTCTATCTATTATGAATAATAATTACACTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAAAATGCCCTTCTCTATCTATTATGAATAATAATTACACTTATT  100

seq1  TGCTTCTTGGGTTCATTTGCTTGGAACTTTTCAACTGTATACTATGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTGGGTTCATTTGCTTGGAACTTTTCAACTGTATACTATGAGGT  150

seq1  AATATATATTTTTGATGTTGAGATGTTTTTCTTGTATGTAGCAGAACGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATTTTTGATGTTGAGATGTTTTTCTTGTATGTAGCAGAACGAT  200

seq1  ATATACTGCTTTCAAATCCAGTCTGTTAAGCTGTGTCTTTATATTGAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTGCTTTCAAATCCAGTCTGTTAAGCTGTGTCTTTATATTGAATC  250

seq1  CATCAATATTAGAAGATATAAATGACAAATGACTGTGAATTCCCATTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATATTAGAAGATATAAATGACAAATGACTGTGAATTCCCATTATT  300

seq1  TTGTTTATGTTAGTGATGGCATTGTGTGTGTGTGTGTGTTTGTGTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATGTTAGTGATGGCATTGTGTGTGTGTGTGTGTTTGTGTGTGTG  350

seq1  TCCCTTATTTGGGTTTTGTTGGTCTTTGATTATTTGTGACTAGTGTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTATTTGGGTTTTGTTGGTCTTTGATTATTTGTGACTAGTGTTTTC  400

seq1  TTGGGTGTAGTTAACCCTGTTGGGTTGGAGTTTTACTTTGAGTACCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGTAGTTAACCCTGTTGGGTTGGAGTTTTACTTTGAGTACCTTCT  450

seq1  GTAGGGATGTATTTGTGTATAGATAATGTTTAAATTT--AATTTTGTCTT  498
      |||||||||||||||||||||||||||||||||||||  | |||||||||
seq2  GTAGGGATGTATTTGTGTATAGATAATGTTTAAATTTTAATTTTTGTCTT  500

seq1  ACTGGCATGGCCTGCAACTGGGCTGAAGAAGTCTG-TAAGAA-TTGGGGA  546
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  ACTGGCATGGCCTGCAACTGGGCTGAAGAAGTCTGTTAAGAATTTGGGGA  550

seq1  AAAA-TGCATGGCAGCAGGGCAGGCAGTGTGGTTAAACA-GGAT-GGTGT  593
      |||| |||||||||||||||||||||||||||||||||| |||| |||||
seq2  AAAATTGCATGGCAGCAGGGCAGGCAGTGTGGTTAAACAGGGATGGGTGT  600

seq1  -GGGGTAGCAGTAGAACAATG-TTTCTTTGGGAATC-AAATCTAGAGCAC  640
       |||||||||| || |||||| ||| ||||||| || |||||||||||||
seq2  GGGGGTAGCAGCAGGACAATGTTTTTTTTGGGATTCAAAATCTAGAGCAC  650

seq1  TGGG-CATTAATTAA-CACAG-GTAGGTA  666
      |||| |||||| ||| ||||| |||||||
seq2  TGGGCCATTAACTAACCACAGTGTAGGTA  679


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