BAC Information

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BAC

Clone NameB6Ng01-309P03
Chromosome4 (Build37)
Map Location 145,386,341 - 145,387,375
singlet/doubletsinglet
Overlap gene1700029I01Rik
Upstream geneLOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704
Downstream geneLOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309P03.bB6Ng01-309P03.g
ACCGA102060GA102061
length1,2221,049
definitionB6Ng01-309P03.b B6Ng01-309P03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgatgcattctcagactaagtttgtgggaaaatcatttgtca
cattgactacatttgtaaggcttctttaatgtatgatttctgtgattaaa
aacaagataggatttctgggcaaaacatttgtcacattcaatacatctgt
aagaattctcccctgtatgagttctctgatgccatctgactttctcagta
aagctttgtcacattcactacatttgtaaggtttctctcctgtatgaatt
ctctgatgaattatcagactgcatttttgaataaaacatttgtcacattc
actacatttgtaaggtttctctcctgtatgaaatctctgatgaatcctca
aactggattttttagtaaagcatttgtcacattcactacatttgtaaggt
ttctctcctgtatgaattctctgatgaattctcagacagccattttcagt
aaaggatttgtcacattcattacatttgtaaggtttctctcctgtatgaa
ttatctgatgccttctcagactgtgtttgtcagtaaagcatttgtcgcat
tcattgcatttgtaaggttctcttctgaatgaattttctgatgaatacta
agatggcattgttgggtaaagcatttgtcacattcactgcatttgtacag
tttctctcctgtatgaattctctgatgaatactaagatgtgattttccgg
taaagcatttgtcacattcactgcatttataaggtttctctcctgcatga
attctatgatgaactctcagagagcctttgtgagtaaagcatttgtcaca
ttcactacatttgtaagatttctctcctgcatgaattctatgatgaactc
tcagatagcctttgtcagtaaagcatttgtcgcattcactacatttgtaa
aggtttctctcctgcatgaattctatgatgaactctaagactgcttttgt
cagtaaagcatttgtcacactcactgcattgggtacgtttctctctgtat
gaattctctgatgaactctcagactgcctttgtcagtaaagcatttgtcg
caattcactacatttgttaagattcctctccttgatgatttctacgaatg
gaattacttagaataggatggatttggactaaaggacatttgtccacacc
ttcacttgcattggtaacggtatctctctccctaaatgaatctcctgaag
atgagaacactctctcgagaac
gaattcaactttggactcacacttaattaaatgctctgaggaaaaggctt
ttatttctttccttaactcaactcagatgcattattaaccaccagtatgt
ttaatctactcacatatgaagaatcaattaacttgtgacctttttttttt
ttttttgcataagtacaatatgggaaaaactaaaagtcaccacaatggga
aactagtagccctgccatctgaaaggtgttcatgggctttgaaccctgtt
ctttaaagtcagacccccaggtttgggcttgtgcttctgagctctcgcct
ccatgctgagctagaatccattttaacctctcataatcatcacaacaggt
tttgaacctaagaggtcacatgagaatcctggaactcattacaatcatga
aaagagttgacttcctagcaatagtctaatgagacttgggtaaatctcga
gtcttctttccccagcttatactgatatgcatgggtgtcatagagtgttt
cagtgaacaatcaggaaactatttatcaacaaacagtgcagtgtgtattg
taattttgttctagtttttctttctttccttcttacttttttttcttctt
cttcttttttttttttttcacttttttgacaaaaatctagacagttttcc
aaaggagtttctcttaattgcctcacccttcaagcagtaaataatattgt
gccttgacttaatatcattttaattcaccattttctttgactgaggtacc
cacctcctctaccttttctttaagtctgataatctgtctcccacagtttc
tctatgtttttgtttttgtttttttttaacctcactacattttcttttca
aggtgtttttttttttttttggttttttttggtttttgggttttggtttg
gtttttgggcattccctggagcacctattgaacctcaattttaataattt
ttatagttgtcctccagcatctgggtattattttctgtcatgggtttcat
tttgttccctgtctgagtggaattcacatggtttaccaacttaatgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145386341_145387375
seq2: B6Ng01-309P03.g_67_1115

seq1  GAATTCAACTTTGGACTCACACTTAATTAAATGCTCTGAGGAAAAGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTTGGACTCACACTTAATTAAATGCTCTGAGGAAAAGGCTT  50

seq1  TTATTTCTTTCCTTAACTCAACTCAGATGCATTATTAACCACCAGTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTTTCCTTAACTCAACTCAGATGCATTATTAACCACCAGTATGT  100

seq1  TTAATCTACTCACATATGAAGAATCAATTAACTTGTGACCTTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTACTCACATATGAAGAATCAATTAACTTGTGACCTTTTTTTTTT  150

seq1  TTTTTTGCATAAGTACAATATGGGAAAAACTAAAAGTCACCACAATGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGCATAAGTACAATATGGGAAAAACTAAAAGTCACCACAATGGGA  200

seq1  AACTAGTAGCCCTGCCATCTGAAAGGTGTTCATGGGCTTTGAACCCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTAGCCCTGCCATCTGAAAGGTGTTCATGGGCTTTGAACCCTGTT  250

seq1  CTTTAAAGTCAGACCCCCAGGTTTGGGCTTGTGCTTCTGAGCTCTCGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGTCAGACCCCCAGGTTTGGGCTTGTGCTTCTGAGCTCTCGCCT  300

seq1  CCATGCTGAGCTAGAATCCATTTTAACCTCTCATAATCATCACAACAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTGAGCTAGAATCCATTTTAACCTCTCATAATCATCACAACAGGT  350

seq1  TTTGAACCTAAGAGGTCACATGAGAATCCTGGAACTCATTACAATCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACCTAAGAGGTCACATGAGAATCCTGGAACTCATTACAATCATGA  400

seq1  AAAGAGTTGACTTCCTAGCAATAGTCTAATGAGACTTGGGTAAATCTCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTGACTTCCTAGCAATAGTCTAATGAGACTTGGGTAAATCTCGA  450

seq1  GTCTTCTTTCCCCAGCTTATACTGATATGCATGGGTGTCATAGAGTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTTCCCCAGCTTATACTGATATGCATGGGTGTCATAGAGTGTTT  500

seq1  CAGTGAACAATCAGGAAACTATTTATCAACAAACAGTGCAGTGTGTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAACAATCAGGAAACTATTTATCAACAAACAGTGCAGTGTGTATTG  550

seq1  TAATTTTGTTCTAGTTTTTCTTTCTTTCCTTCTTACTTTTTTTTCTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGTTCTAGTTTTTCTTTCTTTCCTTCTTACTTTTTTTTCTTCTT  600

seq1  CTTCTTTTTTTTTTTTTTCACTTTTTTGACAAAAATCTAGACAGTTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTTTTTTTTTTCACTTTTTTGACAAAAATCTAGACAGTTTTCC  650

seq1  AAAGGAGTTTCTCTTAATTGCCTCACCCTTCAAGCAGTAAATAATATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGTTTCTCTTAATTGCCTCACCCTTCAAGCAGTAAATAATATTGT  700

seq1  GCCTTGACTTAATATCATTTTAATTCACCATTTTCTTTGACTGAGGTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGACTTAATATCATTTTAATTCACCATTTTCTTTGACTGAGGTACC  750

seq1  CACCTCCTCTACCTTTTCTTTAAGTCTGATAATCTGTCTCCCACAGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTCTACCTTTTCTTTAAGTCTGATAATCTGTCTCCCACAGTTTC  800

seq1  TCTATGTTTTTGTTTTTG-TTTTTTTTAACCTCACTACATTTTCTTTTC-  848
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  TCTATGTTTTTGTTTTTGTTTTTTTTTAACCTCACTACATTTTCTTTTCA  850

seq1  AGGTGTTTTTTTTTTTTT---GTTTTTTTTTGTTTTTTGGTTTT-GTTTT  894
      ||||||||||||||||||   ||||||||| |||||| |||||| |||| 
seq2  AGGTGTTTTTTTTTTTTTTTGGTTTTTTTTGGTTTTTGGGTTTTGGTTTG  900

seq1  GTTTTTTGGCATTCC--TGAGCACCTATTGAA-CTCAATTTTAATA--TT  939
      |||||| ||||||||   |||||||||||||| |||||||||||||  ||
seq2  GTTTTTGGGCATTCCCTGGAGCACCTATTGAACCTCAATTTTAATAATTT  950

seq1  TTATAG-TGTCCTCAGGCATCT-GGTATTATTTTCTTGTTCATGG--TTC  985
      |||||| |||||||  |||||| |||||||||||||   ||||||  |||
seq2  TTATAGTTGTCCTCCAGCATCTGGGTATTATTTTCT--GTCATGGGTTTC  998

seq1  ATTTTGTT-CCTGTCTGAGTGG-ATTCACATGGTTTACAAACTTTAATGT  1033
      |||||||| ||||||||||||| ||||||||||||||| ||| |||||||
seq2  ATTTTGTTCCCTGTCTGAGTGGAATTCACATGGTTTACCAAC-TTAATGT  1047

seq1  CC  1035
      ||
seq2  CC  1049