BAC Information

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BAC

Clone NameB6Ng01-310B20
Chromosome4 (Build37)
Map Location 58,332,902 - 58,471,456
singlet/doubletdoublet
Overlap geneMusk, Edg2
Upstream geneLOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513, Akap2, D630039A03Rik, Txn1, Txndc8, Svep1
Downstream geneLOC675306, LOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310B20.bB6Ng01-310B20.g
ACCGA102182GA102183
length1,1771,025
definitionB6Ng01-310B20.b B6Ng01-310B20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,332,902 - 58,334,088)(58,470,420 - 58,471,456)
sequence
gaattcactccccaccccgagcttgccgattctaacattaaagtcagcgt
gttctactttggtgatggctttgacatttttaacacagagatggtgcttt
ctctgacagaggttaaaatcacagtctctggtgttccaagcagggcagag
agcctactttttcacagcctaactcttttaacaaatgccactctctctcc
ctatggtaaatattacctaatatttttctcaatgttatcctgtgacttca
caggctgaagggcaagaaggtcatctttttttcttgggttggtaagccaa
ctccgagttctgttagctttggcatttttctcttgacctttgacaatcag
tgcttttatcctagcttgtcatcaggcctgtcagtcatctattaatgtgt
aatatttcacataaaaatgtaatggctaaaggaaaaatgacatcatcctt
gtcgtgtgtcacgagttagagactgggtttgctgggttgttccaggtcat
agatgcagttgaaacattgactacctcttcactgttctgaaagcttggtg
aagctggaagaatcaggtccaacttggcatgcatacaggttagttctagt
tgatgccagatggtgagaatcctcagtttcttcgtacagggcagcttgag
tgtccttacaagctaccgctttccctagtgcctacctgagagctagtgga
gagcagggagaactgtcttcttttctttttcttttctctttctaacagtc
cagactcagaagctaggcaatcatttctgccatattttattggttagaga
tgagccattaaattcaacctgctctttaaggagaaaaatcaagcaccatt
ttttttttccttagggaggacacattttcaaaccacaaatgtcaacttat
ttttataaatcttcctacacgctcatttgctaagtaacttacagtcctgc
taatccctggaaagaccaagatgttttcagtacttctgtaagggaaaccc
ctgaagcctaggcaaagctaaccgattcaacatgcagttgtgtgcttgtg
ctacctgctaaagtctcacaagtgacaatggagtttcagaactttaagcc
acaaggttaggtgcttccaagagtaatgtgctcccaacttggaaactgtt
cgatctatcctatgccatgctgcttct
gaattccaaagtcacacaatcacagaaaccatctgcagctggcaaaaaca
cacctctgctagagcatgaggcaaatcatagtcagctgctatgagcattg
caaagcagccccacatccctacacctgggattaaaatggaagcatgttct
tatatttctgggttgttttttttgtttttttttttttttgtttttttttt
gctttttaaagaaactgaaaatcccagaattctcacgacagaactcagga
catatcagataaattctgggtcagagaatataacagaagatctagattta
aacagacttttactctcatggtagtataatgagtgactttattttagttt
tagattcttcgccttggagatagcataaacaccacatcttcatcttcaga
tgctttgctaaagagtaaatgacaatagagccctcagccagtgtccagca
gcctcttccctccctctcgtgctgaaatacctgagattgaccatgtggcc
ttccctggttctcacttgcttttttcccactcatcccagctgtcccaaga
ggcatgatttagctccgtgtgaaccaagagtgaactttttcatggggagg
agcagtgaataaggaaggacagagagtcctggtgacatttaaaatggaac
tccgagccctgctgcccgcacacagtggagccatgaagaaacccgttgtt
gagatactctgtcttcactaagaaacttgggtctggattttaatagttgg
ttcaaatttagattatgccatcttctgtggtctaatgcacagttgaatag
gcaaacactggctccattataaaattccagggctctctgaatggccaatg
tctaaagatgggctctaggatgaaaggaaacgctcctttatctcttaccc
ttctgtctctggaaagagaaaaaaaaaaaaacacacagtgaaaatgcagt
agctggcaaaagtctgccctgtataaatctctctctctctctcctctctc
taagaggaggaagagaagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_58332902_58334088
seq2: B6Ng01-310B20.b_45_1221

seq1  GAATTCACTCCCCACCCCGAGCTTGCCGATTCTAACATTAAAGTCAGCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCCCACCCCGAGCTTGCCGATTCTAACATTAAAGTCAGCGT  50

seq1  GTTCTACTTTGGTGATGGCTTTGACATTTTTAACACAGAGATGGTGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACTTTGGTGATGGCTTTGACATTTTTAACACAGAGATGGTGCTTT  100

seq1  CTCTGACAGAGGTTAAAATCACAGTCTCTGGTGTTCCAAGCAGGGCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACAGAGGTTAAAATCACAGTCTCTGGTGTTCCAAGCAGGGCAGAG  150

seq1  AGCCTACTTTTTCACAGCCTAACTCTTTTAACAAATGCCACTCTCTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACTTTTTCACAGCCTAACTCTTTTAACAAATGCCACTCTCTCTCC  200

seq1  CTATGGTAAATATTACCTAATATTTTTCTCAATGTTATCCTGTGACTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTAAATATTACCTAATATTTTTCTCAATGTTATCCTGTGACTTCA  250

seq1  CAGGCTGAAGGGCAAGAAGGTCATCTTTTTTTCTTGGGTTGGTAAGCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGAAGGGCAAGAAGGTCATCTTTTTTTCTTGGGTTGGTAAGCCAA  300

seq1  CTCCGAGTTCTGTTAGCTTTGGCATTTTTCTCTTGACCTTTGACAATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGAGTTCTGTTAGCTTTGGCATTTTTCTCTTGACCTTTGACAATCAG  350

seq1  TGCTTTTATCCTAGCTTGTCATCAGGCCTGTCAGTCATCTATTAATGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTATCCTAGCTTGTCATCAGGCCTGTCAGTCATCTATTAATGTGT  400

seq1  AATATTTCACATAAAAATGTAATGGCTAAAGGAAAAATGACATCATCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCACATAAAAATGTAATGGCTAAAGGAAAAATGACATCATCCTT  450

seq1  GTCGTGTGTCACGAGTTAGAGACTGGGTTTGCTGGGTTGTTCCAGGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGTGTCACGAGTTAGAGACTGGGTTTGCTGGGTTGTTCCAGGTCAT  500

seq1  AGATGCAGTTGAAACATTGACTACCTCTTCACTGTTCTGAAAGCTTGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGTTGAAACATTGACTACCTCTTCACTGTTCTGAAAGCTTGGTG  550

seq1  AAGCTGGAAGAATCAGGTCCAACTTGGCATGCATACAGGTTAGTTCTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGAAGAATCAGGTCCAACTTGGCATGCATACAGGTTAGTTCTAGT  600

seq1  TGATGCCAGATGGTGAGAATCCTCAGTTTCTTCGTACAGGGCAGCTTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCAGATGGTGAGAATCCTCAGTTTCTTCGTACAGGGCAGCTTGAG  650

seq1  TGTCCTTACAAGCTACCGCTTTCCCTAGTGCCTACCTGAGAGCTAGTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTACAAGCTACCGCTTTCCCTAGTGCCTACCTGAGAGCTAGTGGA  700

seq1  GAGCAGGGAGAACTGTCTTCTTTTCTTTTTCTTTTCTCTTTCTAACAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGGAGAACTGTCTTCTTTTCTTTTTCTTTTCTCTTTCTAACAGTC  750

seq1  CAGACTCAGAAGCTAGGCAATCATTTCTGCCATATTTTATTGGTTAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCAGAAGCTAGGCAATCATTTCTGCCATATTTTATTGGTTAGAGA  800

seq1  TGAGCCATTAAATTCAACCTGCTCTTTAAGGAGAAAAATCAAGCACCA-T  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGAGCCATTAAATTCAACCTGCTCTTTAAGGAGAAAAATCAAGCACCATT  850

seq1  TTTTTTTTCCTTAGGGAGGACACATTTTCAAACCACAAATGTCAACTTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCTTAGGGAGGACACATTTTCAAACCACAAATGTCAACTTAT  900

seq1  TTTTATAAATCTTCCTACACGCTCATTTGCTAAGTAACTTACAGTCCTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAATCTTCCTACACGCTCATTTGCTAAGTAACTTACAGTCCTGC  950

seq1  TAATCCCTGGAAAGACCAAGATGTTTTCAAGTACTTCTGTAAAGGGAAAC  999
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  TAATCCCTGGAAAGACCAAGATGTTTTC-AGTACTTCTGT-AAGGGAAAC  998

seq1  CCCTGAAGCCTAGGCAAAGCTAACCGATTCAAACATGCAGGTTGTGTTGC  1049
      |||||||||||||||||||||||||||||| |||||||| |||||||   
seq2  CCCTGAAGCCTAGGCAAAGCTAACCGATTC-AACATGCA-GTTGTGT--G  1044

seq1  CTTGTGCTACCTGCCTAAAAGTCTCACAAGTGACAAT-GAGTTTCAGACT  1098
      ||||||||||||||   |||||||||||||||||||| ||||||||||  
seq2  CTTGTGCTACCTGC--TAAAGTCTCACAAGTGACAATGGAGTTTCAGAAC  1092

seq1  TTAAAGCCACAAGGTTA-GTGCTTCCAGAGATGTAGATGTTGCT-CCAAC  1146
      || |||||||||||||| ||||||||| ||| ||| ||| |||| |||||
seq2  TTTAAGCCACAAGGTTAGGTGCTTCCA-AGA-GTA-ATG-TGCTCCCAAC  1138

seq1  TT-GAGACTGTTTCGATCATAATCTTTTTGCATGCTGCTTCT  1187
      || || |||| |||||||   ||| | |  ||||||||||||
seq2  TTGGAAACTG-TTCGATC--TATCCTATGCCATGCTGCTTCT  1177

seq1: chr4_58470420_58471456
seq2: B6Ng01-310B20.g_65_1089 (reverse)

seq1  TCTCTCTCTCTCTCTCCCTCTCTCTCTAGAGAGAGGGAGAGAGAGAGGGA  50
      ||||||||| ||||| |||| |||| |||||||||   ||||||||| ||
seq2  TCTCTCTCT-TCTCTTCCTC-CTCT-TAGAGAGAG---GAGAGAGAGAGA  44

seq1  GAGATTTATTACAGGGCAGACTTTTTGCCAGCTACTGCATTTTTCACTGT  100
      |||||||| |||||||||||| ||||||||||||||||| ||||||||| 
seq2  GAGATTTA-TACAGGGCAGAC-TTTTGCCAGCTACTGCA-TTTTCACTG-  90

seq1  TGTTGTTTTTTTTTTTTTTCTCTTTCCAGAGACAGAAGGGTAAGAGATAA  150
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGT--GTTTTTTTTTTTTTCTCTTTCCAGAGACAGAAGGGTAAGAGATAA  138

seq1  AGGAGCGTTTCCTTTCATCCTAGAGCCCATCTTTAGACATTGGCCATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCGTTTCCTTTCATCCTAGAGCCCATCTTTAGACATTGGCCATTCA  188

seq1  GAGAGCCCTGGAATTTTATAATGGAGCCAGTGTTTGCCTATTCAACTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCCTGGAATTTTATAATGGAGCCAGTGTTTGCCTATTCAACTGTG  238

seq1  CATTAGACCACAGAAGATGGCATAATCTAAATTTGAACCAACTATTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGACCACAGAAGATGGCATAATCTAAATTTGAACCAACTATTAAAA  288

seq1  TCCAGACCCAAGTTTCTTAGTGAAGACAGAGTATCTCAACAACGGGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACCCAAGTTTCTTAGTGAAGACAGAGTATCTCAACAACGGGTTTC  338

seq1  TTCATGGCTCCACTGTGTGCGGGCAGCAGGGCTCGGAGTTCCATTTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGCTCCACTGTGTGCGGGCAGCAGGGCTCGGAGTTCCATTTTAAA  388

seq1  TGTCACCAGGACTCTCTGTCCTTCCTTATTCACTGCTCCTCCCCATGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCAGGACTCTCTGTCCTTCCTTATTCACTGCTCCTCCCCATGAAA  438

seq1  AAGTTCACTCTTGGTTCACACGGAGCTAAATCATGCCTCTTGGGACAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCACTCTTGGTTCACACGGAGCTAAATCATGCCTCTTGGGACAGCT  488

seq1  GGGATGAGTGGGAAAAAAGCAAGTGAGAACCAGGGAAGGCCACATGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGAGTGGGAAAAAAGCAAGTGAGAACCAGGGAAGGCCACATGGTCA  538

seq1  ATCTCAGGTATTTCAGCACGAGAGGGAGGGAAGAGGCTGCTGGACACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGTATTTCAGCACGAGAGGGAGGGAAGAGGCTGCTGGACACTGG  588

seq1  CTGAGGGCTCTATTGTCATTTACTCTTTAGCAAAGCATCTGAAGATGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGCTCTATTGTCATTTACTCTTTAGCAAAGCATCTGAAGATGAAG  638

seq1  ATGTGGTGTTTATGCTATCTCCAAGGCGAAGAATCTAAAACTAAAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTGTTTATGCTATCTCCAAGGCGAAGAATCTAAAACTAAAATAAA  688

seq1  GTCACTCATTATACTACCATGAGAGTAAAAGTCTGTTTAAATCTAGATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCATTATACTACCATGAGAGTAAAAGTCTGTTTAAATCTAGATCT  738

seq1  TCTGTTATATTCTCTGACCCAGAATTTATCTGATATGTCCTGAGTTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTATATTCTCTGACCCAGAATTTATCTGATATGTCCTGAGTTCTGT  788

seq1  CGTGAGAATTCTGGGATTTTCAGTTTCTTTAAAAAGCAAAAAAAAAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGAATTCTGGGATTTTCAGTTTCTTTAAAAAGCAAAAAAAAAACAA  838

seq1  AAAAAAAAAAAAACAAAAAAAACAACCCAGAAATATAAGAACATGCTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAACAAAAAAAACAACCCAGAAATATAAGAACATGCTTCC  888

seq1  ATTTTAATCCCAGGTGTAGGGATGTGGGGCTGCTTTGCAATGCTCATAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATCCCAGGTGTAGGGATGTGGGGCTGCTTTGCAATGCTCATAGC  938

seq1  AGCTGACTATGATTTGCCTCATGCTCTAGCAGAGGTGTGTTTTTGCCAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACTATGATTTGCCTCATGCTCTAGCAGAGGTGTGTTTTTGCCAGC  988

seq1  TGCAGATGGTTTCTGTGATTGTGTGACTTTGGAATTC  1037
      |||||||||||||||||||||||||||||||||||||
seq2  TGCAGATGGTTTCTGTGATTGTGTGACTTTGGAATTC  1025