BAC Information

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BAC

Clone NameB6Ng01-310C12
Chromosome4 (Build37)
Map Location 143,971,062 - 143,972,139
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009
Downstream genePramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310C12.bB6Ng01-310C12.g
ACCGA102210GA102211
length1,2061,076
definitionB6Ng01-310C12.b B6Ng01-310C12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaagaagatctcataaatggaaaaatctcccatgctcatggata
ggcaggatcaatatagtaaaaatggctatcttactgaaagcaatctacac
attcaatgcaatccccatcaaaattccaactccattcttctaagaattag
aaagggcaatttgcaaattcatctcgaataacaaaaaacgtaggatagcg
agaaatcttctcaatgataaaagaatctctggtggaatgtccacacttga
cctcaagctgtactacagacaattgtaataaaaactgcacggtagaggta
tagcaaccaacaggtagaccactgtaatagaattgaagacccagaaatga
acccacacctatggtcacttgatcttttacaagggagctaaaatcatcca
gttgaaaagagacagcattttcgacaaatggtgctggcaaaactggtggt
tatcatgtagaagaatgcaaattgatccattcttatctccttgtactaag
gtcaagtctaagtgaatcaaggaactccagatcaaaccagagacagtgaa
acttatagaggagaaagtggaaagaagtctcaaagatatgggcacagggg
acaaattcctgaatagaatagcaatggcttgtgctataagatggagaatt
gacaaatgaaacctcataaaattgcaaagcttctgtaatgcaaaagatac
tgtcaatgagacaaaaaggccaccaacagacttggaaaggatttttacca
atcttaaatcagataggggactaatatccaataaatataaagaactcaag
aaggtggactccagaaaatcaaatgaccccattaaaaagtggggcacgga
gctaaacaaagaattcttaactgaggaatattgaatggctaagaagcacc
tgaaaaaaatgttctacatcctttaatcatcagggaaatgcaaatcaaaa
caactctgagactctacctcacactagtcagaatggctaaggataaaaaa
ttcagtgacagcagatgatggcgaggatgtggagaaagaggaccctcctc
attgttggtgtgatttcagcttgtacacactctggaaaccagtctgcagt
tctgtcccaccctcggaccagtaatctggggtgccaggggaacctgcctg
aagagaaattggttggcaagagaaggaaccttgtcctaatacagagcttc
acggta
gaattccactgtttcccttttaattactttatacaaggaaaacaggatcg
ctgggtggagattccaatgtctaagcagctagtagcaggttgcattcggg
agttgcagctgtgaggggaggcctgcgtagtaatgtagttaaagcctcag
cagtgccagtgaagacactgtctaggaacttggagtcacgtgcgggctgg
cttggatagaaagctctctgtcccatctggtaagtcgctgacctccactg
agacccttctgctcccttctccccagatgaggctcttggtggttccacct
agagtcctgctccactgaggttgaagggtcaggtcacttcttgagcccag
gaattctaggctagcctgagcaatataactaggctggaagaggatctcag
caccgtctacagccaatttctggtagccaagtgtgcatgcacttgatatg
ttataatcttgattcagactcttaggtgaaccgaatgttttcctgatttt
gtggcaaacttgttatatatcccaggttggcctgaaactcacaatgggtg
atttccttcactctgtatcacatgaatgcctggagcctctgaaggcagaa
gagtcctagaagtggatctgtgagccatcaagtgcctgctgagaattcaa
tcccagctctcagagcagccagctcacttaggcactgagttattcccccc
atcccccaacccctgttttttgagacatggtctcagtatgtaaccctggc
ctggccttaaattcaaaggtatcagcctgcctctgcctttcaagcactgc
tgtggttagagcatttacaaacatgctcagctttgcctaatcattttaat
ttctgcttttcgcttattttacattacattatttgcttgtttgttaagag
cttgcttgtctctgcatagtcctgggttgtcctagaactcaatagaagac
caggctagcatcaatgagtttctcatgctattgcctctgggaatgctgag
ataaagacatgcaccccccatacctggctattttacatacatttaaagca
gactttgatggcacagactgtaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_143971062_143972139
seq2: B6Ng01-310C12.g_70_1145 (reverse)

seq1  AGTTTACAAGTCTGTGCCATCAAAGTCTTGCTTTAAATGTTATGTAAAAT  50
      ||||||| ||||||||||||||||||| ||||||||||| ||||||||||
seq2  AGTTTAC-AGTCTGTGCCATCAAAGTC-TGCTTTAAATG-TATGTAAAAT  47

seq1  AGCCAGGTAT-GGGGGTGCATGTCTTTAATCTCAGCATT-CCAGAGGCAA  98
      |||||||||| |||||||||||||||| ||||||||||| ||||||||||
seq2  AGCCAGGTATGGGGGGTGCATGTCTTT-ATCTCAGCATTCCCAGAGGCAA  96

seq1  TAGCATGAGAAACTCATTGATGCTAGCCTGGTCTTCCTATTGAGTTCTAG  148
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAGCATGAGAAACTCATTGATGCTAGCCTGGTCTT-CTATTGAGTTCTAG  145

seq1  GACAA-CCAGGACTATGCAGAGACAAGCAAGCTCTTAACAAACAAGCAAA  197
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCCAGGACTATGCAGAGACAAGCAAGCTCTTAACAAACAAGCAAA  195

seq1  TAATGTAATGTAAAATAAGCGAAAAGCAGAAATTAAAATGATTAGGCAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAATGTAAAATAAGCGAAAAGCAGAAATTAAAATGATTAGGCAAA  245

seq1  GCTGAGCATGTTTGTAAATGCTCTAACCACAGCAGTGCTTGAAAGGCAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCATGTTTGTAAATGCTCTAACCACAGCAGTGCTTGAAAGGCAGA  295

seq1  GGCAGGCTGATACCTTTGAATTTAAGGCCAGGCCAGGGTTACATACTGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCTGATACCTTTGAATTTAAGGCCAGGCCAGGGTTACATACTGAG  345

seq1  ACCATGTCTCAAAAAACAGGGGTTGGGGGATGGGGGGAATAACTCAGTGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTCTCAAAAAACAGGGGTTGGGGGATGGGGGGAATAACTCAGTGC  395

seq1  CTAAGTGAGCTGGCTGCTCTGAGAGCTGGGATTGAATTCTCAGCAGGCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGAGCTGGCTGCTCTGAGAGCTGGGATTGAATTCTCAGCAGGCAC  445

seq1  TTGATGGCTCACAGATCCACTTCTAGGACTCTTCTGCCTTCAGAGGCTCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGCTCACAGATCCACTTCTAGGACTCTTCTGCCTTCAGAGGCTCC  495

seq1  AGGCATTCATGTGATACAGAGTGAAGGAAATCACCCATTGTGAGTTTCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTCATGTGATACAGAGTGAAGGAAATCACCCATTGTGAGTTTCAG  545

seq1  GCCAACCTGGGATATATAACAAGTTTGCCACAAAATCAGGAAAACATTCG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCTGGGATATATAACAAGTTTGCCACAAAATCAGGAAAACATTCG  595

seq1  GTTCACCTAAGAGTCTGAATCAAGATTATAACATATCAAGTGCATGCACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACCTAAGAGTCTGAATCAAGATTATAACATATCAAGTGCATGCACA  645

seq1  CTTGGCTACCAGAAATTGGCTGTAGACGGTGCTGAGATCCTCTTCCAGCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTACCAGAAATTGGCTGTAGACGGTGCTGAGATCCTCTTCCAGCC  695

seq1  TAGTTATATTGCTCAGGCTAGCCTAGAATTCCTGGGCTCAAGAAGTGACC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATATTGCTCAGGCTAGCCTAGAATTCCTGGGCTCAAGAAGTGACC  745

seq1  TGACCCTTCAACCTCAGTGGAGCAGGACTCTAGGTGGAACCACCAAGAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTTCAACCTCAGTGGAGCAGGACTCTAGGTGGAACCACCAAGAGC  795

seq1  CTCATCTGGGGAGAAGGGAGCAGAAGGGTCTCAGTGGAGGTCAGCGACTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGGGGAGAAGGGAGCAGAAGGGTCTCAGTGGAGGTCAGCGACTT  845

seq1  ACCAGATGGGACAGAGAGCTTTCTATCCAAGCCAGCCCGCACGTGACTCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATGGGACAGAGAGCTTTCTATCCAAGCCAGCCCGCACGTGACTCC  895

seq1  AAGTTCCTAGACAGTGTCTTCACTGGCACTGCTGAGGCTTTAACTACATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCTAGACAGTGTCTTCACTGGCACTGCTGAGGCTTTAACTACATT  945

seq1  ACTACGCAGGCCTCCCCTCACAGCTGCAACTCCCGAATGCAACCTGCTAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACGCAGGCCTCCCCTCACAGCTGCAACTCCCGAATGCAACCTGCTAC  995

seq1  TAGCTGCTTAGACATTGGAATCTCCACCCAGCGATCCTGTTTTCCTTGTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCTTAGACATTGGAATCTCCACCCAGCGATCCTGTTTTCCTTGTA  1045

seq1  TAAAGTAATTAAAAGGGAAACAGTGGAATTC  1078
      |||||||||||||||||||||||||||||||
seq2  TAAAGTAATTAAAAGGGAAACAGTGGAATTC  1076